Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1538:A1520
Extra
PDB:
ATOM 1 O3' A A1537 18.038 -40.674 -0.956 1.00 0.01 O
ATOM 2 P A A1538 18.122 -39.500 0.103 1.00 5.36 P
ATOM 3 OP1 A A1538 19.437 -38.844 -0.104 1.00 5.36 O
ATOM 4 OP2 A A1538 17.810 -40.079 1.440 1.00 5.36 O
ATOM 5 O5' A A1538 16.940 -38.534 -0.368 1.00 5.36 O
ATOM 6 C5' A A1538 17.005 -37.892 -1.636 1.00 5.36 C
ATOM 7 C4' A A1538 15.652 -37.764 -2.285 1.00 5.36 C
ATOM 8 O4' A A1538 15.066 -39.068 -2.487 1.00 5.36 O
ATOM 9 C3' A A1538 14.618 -36.991 -1.497 1.00 5.36 C
ATOM 10 O3' A A1538 14.747 -35.597 -1.673 1.00 5.36 O
ATOM 11 C2' A A1538 13.300 -37.548 -2.022 1.00 5.36 C
ATOM 12 O2' A A1538 12.882 -36.901 -3.221 1.00 5.36 O
ATOM 13 C1' A A1538 13.672 -38.998 -2.326 1.00 5.36 C
ATOM 14 N9 A A1538 13.279 -39.847 -1.208 1.00 5.12 N
ATOM 15 C8 A A1538 13.958 -40.187 -0.065 1.00 5.12 C
ATOM 16 N7 A A1538 13.223 -40.889 0.773 1.00 5.12 N
ATOM 17 C5 A A1538 11.991 -40.968 0.131 1.00 5.12 C
ATOM 18 C6 A A1538 10.789 -41.566 0.473 1.00 5.12 C
ATOM 19 N6 A A1538 10.649 -42.211 1.611 1.00 5.12 N
ATOM 20 N1 A A1538 9.755 -41.465 -0.378 1.00 5.12 N
ATOM 21 C2 A A1538 9.916 -40.791 -1.520 1.00 5.12 C
ATOM 22 N3 A A1538 10.998 -40.180 -1.967 1.00 5.12 N
ATOM 23 C4 A A1538 12.003 -40.316 -1.083 1.00 5.12 C
ATOM 24 P G A1539 15.266 -34.680 -0.489 1.00 1.87 P
ATOM 25 OP1 G A1539 15.641 -33.385 -1.093 1.00 1.87 O
ATOM 26 OP2 G A1539 16.280 -35.451 0.240 1.00 1.87 O
ATOM 27 O5' G A1539 13.971 -34.507 0.395 1.00 1.87 O
TER
ATOM 1 O3' C B1519 6.891 -47.010 8.831 1.00 0.66 O
ATOM 2 P G B1520 6.995 -47.808 7.447 1.00 6.80 P
ATOM 3 OP1 G B1520 5.736 -48.590 7.318 1.00 6.80 O
ATOM 4 OP2 G B1520 8.300 -48.544 7.444 1.00 6.80 O
ATOM 5 O5' G B1520 7.027 -46.648 6.371 1.00 6.80 O
ATOM 6 C5' G B1520 6.670 -46.904 5.038 1.00 6.80 C
ATOM 7 C4' G B1520 7.321 -45.930 4.110 1.00 6.80 C
ATOM 8 O4' G B1520 8.090 -44.967 4.873 1.00 6.80 O
ATOM 9 C3' G B1520 8.348 -46.505 3.165 1.00 6.80 C
ATOM 10 O3' G B1520 7.775 -47.215 2.086 1.00 6.80 O
ATOM 11 C2' G B1520 9.134 -45.269 2.772 1.00 6.80 C
ATOM 12 O2' G B1520 8.372 -44.450 1.903 1.00 6.80 O
ATOM 13 C1' G B1520 9.228 -44.573 4.127 1.00 6.80 C
ATOM 14 N9 G B1520 10.427 -44.981 4.871 1.00 6.69 N
ATOM 15 C8 G B1520 10.472 -45.851 5.926 1.00 6.69 C
ATOM 16 N7 G B1520 11.672 -46.033 6.394 1.00 6.69 N
ATOM 17 C5 G B1520 12.466 -45.238 5.595 1.00 6.69 C
ATOM 18 C6 G B1520 13.858 -45.034 5.607 1.00 6.69 C
ATOM 19 O6 G B1520 14.717 -45.502 6.362 1.00 6.69 O
ATOM 20 N1 G B1520 14.229 -44.159 4.617 1.00 6.69 N
ATOM 21 C2 G B1520 13.396 -43.560 3.733 1.00 6.69 C
ATOM 22 N2 G B1520 13.964 -42.746 2.848 1.00 6.69 N
ATOM 23 N3 G B1520 12.106 -43.737 3.702 1.00 6.69 N
ATOM 24 C4 G B1520 11.711 -44.580 4.657 1.00 6.69 C
ATOM 25 P A B1521 7.345 -48.738 2.310 1.00 15.26 P
ATOM 26 OP1 A B1521 5.874 -48.769 2.322 1.00 15.26 O
ATOM 27 OP2 A B1521 8.075 -49.249 3.497 1.00 15.26 O
ATOM 28 O5' A B1521 7.879 -49.435 1.006 1.00 15.26 O
TER
ATOM 2 P A A1538 18.122 -39.500 0.103 1.00 5.36 P
ATOM 3 OP1 A A1538 19.437 -38.844 -0.104 1.00 5.36 O
ATOM 4 OP2 A A1538 17.810 -40.079 1.440 1.00 5.36 O
ATOM 5 O5' A A1538 16.940 -38.534 -0.368 1.00 5.36 O
ATOM 6 C5' A A1538 17.005 -37.892 -1.636 1.00 5.36 C
ATOM 7 C4' A A1538 15.652 -37.764 -2.285 1.00 5.36 C
ATOM 8 O4' A A1538 15.066 -39.068 -2.487 1.00 5.36 O
ATOM 9 C3' A A1538 14.618 -36.991 -1.497 1.00 5.36 C
ATOM 10 O3' A A1538 14.747 -35.597 -1.673 1.00 5.36 O
ATOM 11 C2' A A1538 13.300 -37.548 -2.022 1.00 5.36 C
ATOM 12 O2' A A1538 12.882 -36.901 -3.221 1.00 5.36 O
ATOM 13 C1' A A1538 13.672 -38.998 -2.326 1.00 5.36 C
ATOM 14 N9 A A1538 13.279 -39.847 -1.208 1.00 5.12 N
ATOM 15 C8 A A1538 13.958 -40.187 -0.065 1.00 5.12 C
ATOM 16 N7 A A1538 13.223 -40.889 0.773 1.00 5.12 N
ATOM 17 C5 A A1538 11.991 -40.968 0.131 1.00 5.12 C
ATOM 18 C6 A A1538 10.789 -41.566 0.473 1.00 5.12 C
ATOM 19 N6 A A1538 10.649 -42.211 1.611 1.00 5.12 N
ATOM 20 N1 A A1538 9.755 -41.465 -0.378 1.00 5.12 N
ATOM 21 C2 A A1538 9.916 -40.791 -1.520 1.00 5.12 C
ATOM 22 N3 A A1538 10.998 -40.180 -1.967 1.00 5.12 N
ATOM 23 C4 A A1538 12.003 -40.316 -1.083 1.00 5.12 C
ATOM 24 P G A1539 15.266 -34.680 -0.489 1.00 1.87 P
ATOM 25 OP1 G A1539 15.641 -33.385 -1.093 1.00 1.87 O
ATOM 26 OP2 G A1539 16.280 -35.451 0.240 1.00 1.87 O
ATOM 27 O5' G A1539 13.971 -34.507 0.395 1.00 1.87 O
TER
ATOM 1 O3' C B1519 6.891 -47.010 8.831 1.00 0.66 O
ATOM 2 P G B1520 6.995 -47.808 7.447 1.00 6.80 P
ATOM 3 OP1 G B1520 5.736 -48.590 7.318 1.00 6.80 O
ATOM 4 OP2 G B1520 8.300 -48.544 7.444 1.00 6.80 O
ATOM 5 O5' G B1520 7.027 -46.648 6.371 1.00 6.80 O
ATOM 6 C5' G B1520 6.670 -46.904 5.038 1.00 6.80 C
ATOM 7 C4' G B1520 7.321 -45.930 4.110 1.00 6.80 C
ATOM 8 O4' G B1520 8.090 -44.967 4.873 1.00 6.80 O
ATOM 9 C3' G B1520 8.348 -46.505 3.165 1.00 6.80 C
ATOM 10 O3' G B1520 7.775 -47.215 2.086 1.00 6.80 O
ATOM 11 C2' G B1520 9.134 -45.269 2.772 1.00 6.80 C
ATOM 12 O2' G B1520 8.372 -44.450 1.903 1.00 6.80 O
ATOM 13 C1' G B1520 9.228 -44.573 4.127 1.00 6.80 C
ATOM 14 N9 G B1520 10.427 -44.981 4.871 1.00 6.69 N
ATOM 15 C8 G B1520 10.472 -45.851 5.926 1.00 6.69 C
ATOM 16 N7 G B1520 11.672 -46.033 6.394 1.00 6.69 N
ATOM 17 C5 G B1520 12.466 -45.238 5.595 1.00 6.69 C
ATOM 18 C6 G B1520 13.858 -45.034 5.607 1.00 6.69 C
ATOM 19 O6 G B1520 14.717 -45.502 6.362 1.00 6.69 O
ATOM 20 N1 G B1520 14.229 -44.159 4.617 1.00 6.69 N
ATOM 21 C2 G B1520 13.396 -43.560 3.733 1.00 6.69 C
ATOM 22 N2 G B1520 13.964 -42.746 2.848 1.00 6.69 N
ATOM 23 N3 G B1520 12.106 -43.737 3.702 1.00 6.69 N
ATOM 24 C4 G B1520 11.711 -44.580 4.657 1.00 6.69 C
ATOM 25 P A B1521 7.345 -48.738 2.310 1.00 15.26 P
ATOM 26 OP1 A B1521 5.874 -48.769 2.322 1.00 15.26 O
ATOM 27 OP2 A B1521 8.075 -49.249 3.497 1.00 15.26 O
ATOM 28 O5' A B1521 7.879 -49.435 1.006 1.00 15.26 O
TER
Atoms:
OP1: (19.437,-38.844,-0.104)
OP2: (17.810,-40.079,1.440)
C3': (14.618,-36.991,-1.497)
C1': (13.672,-38.998,-2.326)
C5': (17.005,-37.892,-1.636)
O4': (15.066,-39.068,-2.487)
C8: (13.958,-40.187,-0.065)
O2': (12.882,-36.901,-3.221)
C6: (10.789,-41.566,0.473)
C5: (11.991,-40.968,0.131)
C4: (12.003,-40.316,-1.083)
P: (18.122,-39.500,0.103)
C4': (15.652,-37.764,-2.285)
C2': (13.300,-37.548,-2.022)
C2: (9.916,-40.791,-1.520)
N1: (9.755,-41.465,-0.378)
N3: (10.998,-40.180,-1.967)
N6: (10.649,-42.211,1.611)
N7: (13.223,-40.889,0.773)
N9: (13.279,-39.847,-1.208)
O5': (16.940,-38.534,-0.368)
O3': (14.747,-35.597,-1.673)
OP2: (17.810,-40.079,1.440)
C3': (14.618,-36.991,-1.497)
C1': (13.672,-38.998,-2.326)
C5': (17.005,-37.892,-1.636)
O4': (15.066,-39.068,-2.487)
C8: (13.958,-40.187,-0.065)
O2': (12.882,-36.901,-3.221)
C6: (10.789,-41.566,0.473)
C5: (11.991,-40.968,0.131)
C4: (12.003,-40.316,-1.083)
P: (18.122,-39.500,0.103)
C4': (15.652,-37.764,-2.285)
C2': (13.300,-37.548,-2.022)
C2: (9.916,-40.791,-1.520)
N1: (9.755,-41.465,-0.378)
N3: (10.998,-40.180,-1.967)
N6: (10.649,-42.211,1.611)
N7: (13.223,-40.889,0.773)
N9: (13.279,-39.847,-1.208)
O5': (16.940,-38.534,-0.368)
O3': (14.747,-35.597,-1.673)
OP1: (5.736,-48.590,7.318)
OP2: (8.300,-48.544,7.444)
C3': (8.348,-46.505,3.165)
C1': (9.228,-44.573,4.127)
C5': (6.670,-46.904,5.038)
O6: (14.717,-45.502,6.362)
O4': (8.090,-44.967,4.873)
C8: (10.472,-45.851,5.926)
C2: (13.396,-43.560,3.733)
C6: (13.858,-45.034,5.607)
C5: (12.466,-45.238,5.595)
C4: (11.711,-44.580,4.657)
P: (6.995,-47.808,7.447)
C4': (7.321,-45.930,4.110)
C2': (9.134,-45.269,2.772)
O2': (8.372,-44.450,1.903)
N1: (14.229,-44.159,4.617)
N2: (13.964,-42.746,2.848)
N3: (12.106,-43.737,3.702)
N7: (11.672,-46.033,6.394)
N9: (10.427,-44.981,4.871)
O5': (7.027,-46.648,6.371)
O3': (7.775,-47.215,2.086)
OP2: (8.300,-48.544,7.444)
C3': (8.348,-46.505,3.165)
C1': (9.228,-44.573,4.127)
C5': (6.670,-46.904,5.038)
O6: (14.717,-45.502,6.362)
O4': (8.090,-44.967,4.873)
C8: (10.472,-45.851,5.926)
C2: (13.396,-43.560,3.733)
C6: (13.858,-45.034,5.607)
C5: (12.466,-45.238,5.595)
C4: (11.711,-44.580,4.657)
P: (6.995,-47.808,7.447)
C4': (7.321,-45.930,4.110)
C2': (9.134,-45.269,2.772)
O2': (8.372,-44.450,1.903)
N1: (14.229,-44.159,4.617)
N2: (13.964,-42.746,2.848)
N3: (12.106,-43.737,3.702)
N7: (11.672,-46.033,6.394)
N9: (10.427,-44.981,4.871)
O5': (7.027,-46.648,6.371)
O3': (7.775,-47.215,2.086)
Image (generated by PyMOL):