ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:0508:013

Extra

PDB:
ATOM 1 O3' A A 507 24.766 136.615 74.346 1.00 34.31 O
ATOM 2 P A A 508 25.100 137.365 75.718 1.00 36.34 P
ATOM 3 OP1 A A 508 23.957 137.099 76.627 1.00 35.25 O
ATOM 4 OP2 A A 508 25.491 138.770 75.430 1.00 34.54 O
ATOM 5 O5' A A 508 26.393 136.596 76.239 1.00 35.17 O
ATOM 6 C5' A A 508 26.360 135.182 76.487 1.00 34.27 C
ATOM 7 C4' A A 508 27.749 134.676 76.778 1.00 35.49 C
ATOM 8 O4' A A 508 28.583 134.853 75.601 1.00 36.40 O
ATOM 9 C3' A A 508 28.500 135.410 77.880 1.00 33.57 C
ATOM 10 O3' A A 508 28.130 134.924 79.159 1.00 30.90 O
ATOM 11 C2' A A 508 29.952 135.103 77.534 1.00 34.67 C
ATOM 12 O2' A A 508 30.362 133.808 77.923 1.00 34.72 O
ATOM 13 C1' A A 508 29.911 135.155 76.004 1.00 35.50 C
ATOM 14 N9 A A 508 30.280 136.462 75.455 1.00 34.63 N
ATOM 15 C8 A A 508 29.467 137.526 75.154 1.00 31.92 C
ATOM 16 N7 A A 508 30.103 138.551 74.645 1.00 31.50 N
ATOM 17 C5 A A 508 31.429 138.139 74.612 1.00 33.37 C
ATOM 18 C6 A A 508 32.613 138.764 74.156 1.00 33.50 C
ATOM 19 N6 A A 508 32.656 139.992 73.617 1.00 30.17 N
ATOM 20 N1 A A 508 33.768 138.070 74.270 1.00 33.65 N
ATOM 21 C2 A A 508 33.730 136.837 74.797 1.00 33.29 C
ATOM 22 N3 A A 508 32.687 136.143 75.244 1.00 32.38 N
ATOM 23 C4 A A 508 31.553 136.858 75.121 1.00 33.89 C
ATOM 24 P A A 509 28.174 135.902 80.434 1.00 32.91 P
ATOM 25 OP1 A A 509 27.693 135.121 81.597 1.00 32.88 O
ATOM 26 OP2 A A 509 27.529 137.200 80.097 1.00 33.50 O
ATOM 27 O5' A A 509 29.720 136.185 80.666 1.00 34.17 O
TER

ATOM 1 O3' U B 12 34.304 148.456 73.884 1.00 33.22 O
ATOM 2 P G B 13 34.777 148.090 72.395 1.00 32.68 P
ATOM 3 OP1 G B 13 36.161 148.587 72.231 1.00 33.61 O
ATOM 4 OP2 G B 13 33.716 148.555 71.467 1.00 36.49 O
ATOM 5 O5' G B 13 34.813 146.498 72.354 1.00 34.80 O
ATOM 6 C5' G B 13 35.762 145.739 73.130 1.00 32.21 C
ATOM 7 C4' G B 13 35.410 144.270 73.069 1.00 34.75 C
ATOM 8 O4' G B 13 34.123 144.060 73.710 1.00 35.91 O
ATOM 9 C3' G B 13 35.240 143.710 71.664 1.00 33.23 C
ATOM 10 O3' G B 13 36.494 143.293 71.139 1.00 31.43 O
ATOM 11 C2' G B 13 34.287 142.543 71.884 1.00 33.92 C
ATOM 12 O2' G B 13 34.956 141.417 72.393 1.00 33.76 O
ATOM 13 C1' G B 13 33.373 143.098 72.982 1.00 34.95 C
ATOM 14 N9 G B 13 32.169 143.761 72.492 1.00 36.41 N
ATOM 15 C8 G B 13 32.081 145.036 71.988 1.00 35.16 C
ATOM 16 N7 G B 13 30.865 145.376 71.665 1.00 36.22 N
ATOM 17 C5 G B 13 30.103 144.257 71.963 1.00 36.15 C
ATOM 18 C6 G B 13 28.711 144.034 71.827 1.00 35.91 C
ATOM 19 O6 G B 13 27.845 144.812 71.417 1.00 36.97 O
ATOM 20 N1 G B 13 28.355 142.753 72.233 1.00 35.74 N
ATOM 21 C2 G B 13 29.223 141.812 72.716 1.00 35.46 C
ATOM 22 N2 G B 13 28.686 140.637 73.053 1.00 35.82 N
ATOM 23 N3 G B 13 30.524 142.009 72.858 1.00 37.28 N
ATOM 24 C4 G B 13 30.893 143.245 72.463 1.00 37.20 C
ATOM 25 P G B 14 36.840 143.541 69.587 1.00 33.26 P
ATOM 26 OP1 G B 14 38.312 143.507 69.420 1.00 31.73 O
ATOM 27 OP2 G B 14 36.085 144.740 69.143 1.00 34.96 O
ATOM 28 O5' G B 14 36.224 142.280 68.839 1.00 30.04 O
TER

Atoms:
OP1: (23.957,137.099,76.627)
OP2: (25.491,138.770,75.430)
C3': (28.500,135.410,77.880)
C1': (29.911,135.155,76.004)
C5': (26.360,135.182,76.487)
O4': (28.583,134.853,75.601)
C8: (29.467,137.526,75.154)
O2': (30.362,133.808,77.923)
C6: (32.613,138.764,74.156)
C5: (31.429,138.139,74.612)
C4: (31.553,136.858,75.121)
P: (25.100,137.365,75.718)
C4': (27.749,134.676,76.778)
C2': (29.952,135.103,77.534)
C2: (33.730,136.837,74.797)
N1: (33.768,138.070,74.270)
N3: (32.687,136.143,75.244)
N6: (32.656,139.992,73.617)
N7: (30.103,138.551,74.645)
N9: (30.280,136.462,75.455)
O5': (26.393,136.596,76.239)
O3': (28.130,134.924,79.159)
OP1: (36.161,148.587,72.231)
OP2: (33.716,148.555,71.467)
C3': (35.240,143.710,71.664)
C1': (33.373,143.098,72.982)
C5': (35.762,145.739,73.130)
O6: (27.845,144.812,71.417)
O4': (34.123,144.060,73.710)
C8: (32.081,145.036,71.988)
C2: (29.223,141.812,72.716)
C6: (28.711,144.034,71.827)
C5: (30.103,144.257,71.963)
C4: (30.893,143.245,72.463)
P: (34.777,148.090,72.395)
C4': (35.410,144.270,73.069)
C2': (34.287,142.543,71.884)
O2': (34.956,141.417,72.393)
N1: (28.355,142.753,72.233)
N2: (28.686,140.637,73.053)
N3: (30.524,142.009,72.858)
N7: (30.865,145.376,71.665)
N9: (32.169,143.761,72.492)
O5': (34.813,146.498,72.354)
O3': (36.494,143.293,71.139)
Image (generated by PyMOL):
PyMOL image
show in jmol