ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2J00:A643:A702

Extra

PDB:
ATOM 1 O3' G A 642 -4.165 126.470 68.424 1.00 31.50 O
ATOM 2 P A A 643 -4.105 127.929 69.105 1.00 45.24 P
ATOM 3 OP1 A A 643 -4.725 128.868 68.124 1.00 41.56 O
ATOM 4 OP2 A A 643 -2.713 128.193 69.602 1.00 43.04 O
ATOM 5 O5' A A 643 -5.110 127.793 70.344 1.00 19.76 O
ATOM 6 C5' A A 643 -4.839 128.467 71.602 1.00 19.15 C
ATOM 7 C4' A A 643 -5.230 127.599 72.799 1.00 17.74 C
ATOM 8 O4' A A 643 -6.652 127.663 73.080 1.00 15.93 O
ATOM 9 C3' A A 643 -4.954 126.109 72.749 1.00 17.45 C
ATOM 10 O3' A A 643 -3.613 125.802 73.060 1.00 17.96 O
ATOM 11 C2' A A 643 -5.834 125.577 73.862 1.00 17.13 C
ATOM 12 O2' A A 643 -5.169 125.771 75.082 1.00 16.76 O
ATOM 13 C1' A A 643 -7.024 126.528 73.825 1.00 14.80 C
ATOM 14 N9 A A 643 -8.199 125.939 73.218 1.00 18.87 N
ATOM 15 C8 A A 643 -8.455 125.726 71.897 1.00 19.77 C
ATOM 16 N7 A A 643 -9.623 125.180 71.672 1.00 18.46 N
ATOM 17 C5 A A 643 -10.164 125.024 72.934 1.00 17.63 C
ATOM 18 C6 A A 643 -11.381 124.509 73.374 1.00 16.52 C
ATOM 19 N6 A A 643 -12.317 124.024 72.561 1.00 16.19 N
ATOM 20 N1 A A 643 -11.614 124.503 74.700 1.00 16.07 N
ATOM 21 C2 A A 643 -10.668 124.974 75.512 1.00 18.87 C
ATOM 22 N3 A A 643 -9.481 125.479 75.213 1.00 19.68 N
ATOM 23 C4 A A 643 -9.293 125.480 73.893 1.00 18.42 C
ATOM 24 P G A 644 -2.997 124.411 72.560 1.00 31.52 P
ATOM 25 OP1 G A 644 -1.694 124.688 71.914 1.00 40.52 O
ATOM 26 OP2 G A 644 -4.054 123.682 71.805 1.00 40.10 O
ATOM 27 O5' G A 644 -2.709 123.619 73.908 1.00 8.72 O
TER

ATOM 1 O3' U B 701 -16.907 119.005 63.669 1.00129.84 O
ATOM 2 P G B 702 -15.679 119.315 64.652 1.00 97.43 P
ATOM 3 OP1 G B 702 -14.832 118.094 64.704 1.00 94.70 O
ATOM 4 OP2 G B 702 -16.251 119.866 65.904 1.00 93.58 O
ATOM 5 O5' G B 702 -14.842 120.460 63.925 1.00 51.22 O
ATOM 6 C5' G B 702 -14.048 120.176 62.753 1.00 44.74 C
ATOM 7 C4' G B 702 -12.803 121.050 62.722 1.00 39.91 C
ATOM 8 O4' G B 702 -13.154 122.394 63.158 1.00 38.73 O
ATOM 9 C3' G B 702 -11.653 120.640 63.632 1.00 38.51 C
ATOM 10 O3' G B 702 -10.805 119.683 63.000 1.00 37.57 O
ATOM 11 C2' G B 702 -10.924 121.962 63.877 1.00 37.13 C
ATOM 12 O2' G B 702 -9.980 122.301 62.885 1.00 37.20 O
ATOM 13 C1' G B 702 -12.079 122.967 63.885 1.00 35.42 C
ATOM 14 N9 G B 702 -12.534 123.225 65.249 1.00 31.41 N
ATOM 15 C8 G B 702 -13.744 122.888 65.809 1.00 29.50 C
ATOM 16 N7 G B 702 -13.808 123.151 67.085 1.00 29.10 N
ATOM 17 C5 G B 702 -12.575 123.713 67.378 1.00 27.91 C
ATOM 18 C6 G B 702 -12.048 124.158 68.603 1.00 27.43 C
ATOM 19 O6 G B 702 -12.566 124.115 69.709 1.00 25.95 O
ATOM 20 N1 G B 702 -10.771 124.679 68.458 1.00 27.10 N
ATOM 21 C2 G B 702 -10.080 124.751 67.277 1.00 27.18 C
ATOM 22 N2 G B 702 -8.855 125.313 67.326 1.00 27.55 N
ATOM 23 N3 G B 702 -10.553 124.308 66.123 1.00 27.70 N
ATOM 24 C4 G B 702 -11.797 123.804 66.249 1.00 28.75 C
ATOM 25 P G B 703 -9.770 118.827 63.884 1.00 65.05 P
ATOM 26 OP1 G B 703 -8.834 118.107 62.980 1.00 79.47 O
ATOM 27 OP2 G B 703 -10.555 118.064 64.894 1.00 78.66 O
ATOM 28 O5' G B 703 -8.919 119.931 64.639 1.00 26.48 O
TER

Atoms:
OP1: (-4.725,128.868,68.124)
OP2: (-2.713,128.193,69.602)
C3': (-4.954,126.109,72.749)
C1': (-7.024,126.528,73.825)
C5': (-4.839,128.467,71.602)
O4': (-6.652,127.663,73.080)
C8: (-8.455,125.726,71.897)
O2': (-5.169,125.771,75.082)
C6: (-11.381,124.509,73.374)
C5: (-10.164,125.024,72.934)
C4: (-9.293,125.480,73.893)
P: (-4.105,127.929,69.105)
C4': (-5.230,127.599,72.799)
C2': (-5.834,125.577,73.862)
C2: (-10.668,124.974,75.512)
N1: (-11.614,124.503,74.700)
N3: (-9.481,125.479,75.213)
N6: (-12.317,124.024,72.561)
N7: (-9.623,125.180,71.672)
N9: (-8.199,125.939,73.218)
O5': (-5.110,127.793,70.344)
O3': (-3.613,125.802,73.060)
OP1: (-14.832,118.094,64.704)
OP2: (-16.251,119.866,65.904)
C3': (-11.653,120.640,63.632)
C1': (-12.079,122.967,63.885)
C5': (-14.048,120.176,62.753)
O6: (-12.566,124.115,69.709)
O4': (-13.154,122.394,63.158)
C8: (-13.744,122.888,65.809)
C2: (-10.080,124.751,67.277)
C6: (-12.048,124.158,68.603)
C5: (-12.575,123.713,67.378)
C4: (-11.797,123.804,66.249)
P: (-15.679,119.315,64.652)
C4': (-12.803,121.050,62.722)
C2': (-10.924,121.962,63.877)
O2': (-9.980,122.301,62.885)
N1: (-10.771,124.679,68.458)
N2: (-8.855,125.313,67.326)
N3: (-10.553,124.308,66.123)
N7: (-13.808,123.151,67.085)
N9: (-12.534,123.225,65.249)
O5': (-14.842,120.460,63.925)
O3': (-10.805,119.683,63.000)
Image (generated by PyMOL):
PyMOL image
show in jmol