Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2471:A2465
Extra
PDB:
ATOM 1 O3' U A2470 -109.216 -55.149 -42.237 1.00 6.46 O
ATOM 2 P A A2471 -108.945 -55.776 -43.659 1.00 4.33 P
ATOM 3 OP1 A A2471 -110.082 -55.403 -44.534 1.00 4.33 O
ATOM 4 OP2 A A2471 -108.647 -57.208 -43.454 1.00 4.33 O
ATOM 5 O5' A A2471 -107.644 -55.000 -44.110 1.00 4.33 O
ATOM 6 C5' A A2471 -106.786 -55.522 -45.097 1.00 4.33 C
ATOM 7 C4' A A2471 -105.745 -54.520 -45.455 1.00 4.33 C
ATOM 8 O4' A A2471 -106.363 -53.463 -46.217 1.00 4.33 O
ATOM 9 C3' A A2471 -105.106 -53.815 -44.275 1.00 4.33 C
ATOM 10 O3' A A2471 -104.039 -54.555 -43.714 1.00 4.33 O
ATOM 11 C2' A A2471 -104.687 -52.469 -44.859 1.00 4.33 C
ATOM 12 O2' A A2471 -103.423 -52.549 -45.499 1.00 4.33 O
ATOM 13 C1' A A2471 -105.757 -52.229 -45.918 1.00 4.33 C
ATOM 14 N9 A A2471 -106.777 -51.303 -45.434 1.00 2.94 N
ATOM 15 C8 A A2471 -108.088 -51.478 -45.065 1.00 2.94 C
ATOM 16 N7 A A2471 -108.646 -50.373 -44.635 1.00 2.94 N
ATOM 17 C5 A A2471 -107.616 -49.445 -44.745 1.00 2.94 C
ATOM 18 C6 A A2471 -107.539 -48.098 -44.443 1.00 2.94 C
ATOM 19 N6 A A2471 -108.577 -47.415 -43.954 1.00 2.94 N
ATOM 20 N1 A A2471 -106.356 -47.488 -44.637 1.00 2.94 N
ATOM 21 C2 A A2471 -105.339 -48.199 -45.107 1.00 2.94 C
ATOM 22 N3 A A2471 -105.286 -49.479 -45.433 1.00 2.94 N
ATOM 23 C4 A A2471 -106.471 -50.016 -45.219 1.00 2.94 C
ATOM 24 P U A2472 -103.924 -54.765 -42.127 1.00 0.01 P
ATOM 25 OP1 U A2472 -102.735 -55.602 -41.896 1.00 0.01 O
ATOM 26 OP2 U A2472 -105.224 -55.240 -41.636 1.00 0.01 O
ATOM 27 O5' U A2472 -103.669 -53.311 -41.595 1.00 0.01 O
TER
ATOM 1 O3' A B2464 -113.102 -40.832 -40.353 1.00 12.94 O
ATOM 2 P G B2465 -113.665 -40.806 -41.844 1.00 13.09 P
ATOM 3 OP1 G B2465 -113.481 -39.430 -42.340 1.00 13.09 O
ATOM 4 OP2 G B2465 -115.047 -41.392 -41.804 1.00 13.09 O
ATOM 5 O5' G B2465 -112.694 -41.809 -42.610 1.00 13.09 O
ATOM 6 C5' G B2465 -111.292 -41.657 -42.546 1.00 13.09 C
ATOM 7 C4' G B2465 -110.600 -42.799 -43.225 1.00 13.09 C
ATOM 8 O4' G B2465 -110.832 -44.002 -42.470 1.00 13.09 O
ATOM 9 C3' G B2465 -111.087 -43.145 -44.630 1.00 13.09 C
ATOM 10 O3' G B2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 11 C2' G B2465 -110.722 -44.616 -44.761 1.00 13.09 C
ATOM 12 O2' G B2465 -109.362 -44.771 -45.124 1.00 13.09 O
ATOM 13 C1' G B2465 -110.909 -45.112 -43.330 1.00 13.09 C
ATOM 14 N9 G B2465 -112.212 -45.744 -43.141 1.00 12.87 N
ATOM 15 C8 G B2465 -113.353 -45.139 -42.704 1.00 12.87 C
ATOM 16 N7 G B2465 -114.371 -45.963 -42.644 1.00 12.87 N
ATOM 17 C5 G B2465 -113.846 -47.159 -43.059 1.00 12.87 C
ATOM 18 C6 G B2465 -114.473 -48.386 -43.205 1.00 12.87 C
ATOM 19 O6 G B2465 -115.650 -48.632 -42.964 1.00 12.87 O
ATOM 20 N1 G B2465 -113.605 -49.352 -43.675 1.00 12.87 N
ATOM 21 C2 G B2465 -112.293 -49.134 -43.952 1.00 12.87 C
ATOM 22 N2 G B2465 -111.582 -50.173 -44.382 1.00 12.87 N
ATOM 23 N3 G B2465 -111.691 -47.983 -43.809 1.00 12.87 N
ATOM 24 C4 G B2465 -112.526 -47.049 -43.362 1.00 12.87 C
ATOM 25 P U B2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 26 OP1 U B2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 27 OP2 U B2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 28 O5' U B2466 -112.586 -42.274 -46.989 1.00 20.39 O
TER
ATOM 2 P A A2471 -108.945 -55.776 -43.659 1.00 4.33 P
ATOM 3 OP1 A A2471 -110.082 -55.403 -44.534 1.00 4.33 O
ATOM 4 OP2 A A2471 -108.647 -57.208 -43.454 1.00 4.33 O
ATOM 5 O5' A A2471 -107.644 -55.000 -44.110 1.00 4.33 O
ATOM 6 C5' A A2471 -106.786 -55.522 -45.097 1.00 4.33 C
ATOM 7 C4' A A2471 -105.745 -54.520 -45.455 1.00 4.33 C
ATOM 8 O4' A A2471 -106.363 -53.463 -46.217 1.00 4.33 O
ATOM 9 C3' A A2471 -105.106 -53.815 -44.275 1.00 4.33 C
ATOM 10 O3' A A2471 -104.039 -54.555 -43.714 1.00 4.33 O
ATOM 11 C2' A A2471 -104.687 -52.469 -44.859 1.00 4.33 C
ATOM 12 O2' A A2471 -103.423 -52.549 -45.499 1.00 4.33 O
ATOM 13 C1' A A2471 -105.757 -52.229 -45.918 1.00 4.33 C
ATOM 14 N9 A A2471 -106.777 -51.303 -45.434 1.00 2.94 N
ATOM 15 C8 A A2471 -108.088 -51.478 -45.065 1.00 2.94 C
ATOM 16 N7 A A2471 -108.646 -50.373 -44.635 1.00 2.94 N
ATOM 17 C5 A A2471 -107.616 -49.445 -44.745 1.00 2.94 C
ATOM 18 C6 A A2471 -107.539 -48.098 -44.443 1.00 2.94 C
ATOM 19 N6 A A2471 -108.577 -47.415 -43.954 1.00 2.94 N
ATOM 20 N1 A A2471 -106.356 -47.488 -44.637 1.00 2.94 N
ATOM 21 C2 A A2471 -105.339 -48.199 -45.107 1.00 2.94 C
ATOM 22 N3 A A2471 -105.286 -49.479 -45.433 1.00 2.94 N
ATOM 23 C4 A A2471 -106.471 -50.016 -45.219 1.00 2.94 C
ATOM 24 P U A2472 -103.924 -54.765 -42.127 1.00 0.01 P
ATOM 25 OP1 U A2472 -102.735 -55.602 -41.896 1.00 0.01 O
ATOM 26 OP2 U A2472 -105.224 -55.240 -41.636 1.00 0.01 O
ATOM 27 O5' U A2472 -103.669 -53.311 -41.595 1.00 0.01 O
TER
ATOM 1 O3' A B2464 -113.102 -40.832 -40.353 1.00 12.94 O
ATOM 2 P G B2465 -113.665 -40.806 -41.844 1.00 13.09 P
ATOM 3 OP1 G B2465 -113.481 -39.430 -42.340 1.00 13.09 O
ATOM 4 OP2 G B2465 -115.047 -41.392 -41.804 1.00 13.09 O
ATOM 5 O5' G B2465 -112.694 -41.809 -42.610 1.00 13.09 O
ATOM 6 C5' G B2465 -111.292 -41.657 -42.546 1.00 13.09 C
ATOM 7 C4' G B2465 -110.600 -42.799 -43.225 1.00 13.09 C
ATOM 8 O4' G B2465 -110.832 -44.002 -42.470 1.00 13.09 O
ATOM 9 C3' G B2465 -111.087 -43.145 -44.630 1.00 13.09 C
ATOM 10 O3' G B2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 11 C2' G B2465 -110.722 -44.616 -44.761 1.00 13.09 C
ATOM 12 O2' G B2465 -109.362 -44.771 -45.124 1.00 13.09 O
ATOM 13 C1' G B2465 -110.909 -45.112 -43.330 1.00 13.09 C
ATOM 14 N9 G B2465 -112.212 -45.744 -43.141 1.00 12.87 N
ATOM 15 C8 G B2465 -113.353 -45.139 -42.704 1.00 12.87 C
ATOM 16 N7 G B2465 -114.371 -45.963 -42.644 1.00 12.87 N
ATOM 17 C5 G B2465 -113.846 -47.159 -43.059 1.00 12.87 C
ATOM 18 C6 G B2465 -114.473 -48.386 -43.205 1.00 12.87 C
ATOM 19 O6 G B2465 -115.650 -48.632 -42.964 1.00 12.87 O
ATOM 20 N1 G B2465 -113.605 -49.352 -43.675 1.00 12.87 N
ATOM 21 C2 G B2465 -112.293 -49.134 -43.952 1.00 12.87 C
ATOM 22 N2 G B2465 -111.582 -50.173 -44.382 1.00 12.87 N
ATOM 23 N3 G B2465 -111.691 -47.983 -43.809 1.00 12.87 N
ATOM 24 C4 G B2465 -112.526 -47.049 -43.362 1.00 12.87 C
ATOM 25 P U B2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 26 OP1 U B2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 27 OP2 U B2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 28 O5' U B2466 -112.586 -42.274 -46.989 1.00 20.39 O
TER
Atoms:
OP1: (-110.082,-55.403,-44.534)
OP2: (-108.647,-57.208,-43.454)
C3': (-105.106,-53.815,-44.275)
C1': (-105.757,-52.229,-45.918)
C5': (-106.786,-55.522,-45.097)
O4': (-106.363,-53.463,-46.217)
C8: (-108.088,-51.478,-45.065)
O2': (-103.423,-52.549,-45.499)
C6: (-107.539,-48.098,-44.443)
C5: (-107.616,-49.445,-44.745)
C4: (-106.471,-50.016,-45.219)
P: (-108.945,-55.776,-43.659)
C4': (-105.745,-54.520,-45.455)
C2': (-104.687,-52.469,-44.859)
C2: (-105.339,-48.199,-45.107)
N1: (-106.356,-47.488,-44.637)
N3: (-105.286,-49.479,-45.433)
N6: (-108.577,-47.415,-43.954)
N7: (-108.646,-50.373,-44.635)
N9: (-106.777,-51.303,-45.434)
O5': (-107.644,-55.000,-44.110)
O3': (-104.039,-54.555,-43.714)
OP2: (-108.647,-57.208,-43.454)
C3': (-105.106,-53.815,-44.275)
C1': (-105.757,-52.229,-45.918)
C5': (-106.786,-55.522,-45.097)
O4': (-106.363,-53.463,-46.217)
C8: (-108.088,-51.478,-45.065)
O2': (-103.423,-52.549,-45.499)
C6: (-107.539,-48.098,-44.443)
C5: (-107.616,-49.445,-44.745)
C4: (-106.471,-50.016,-45.219)
P: (-108.945,-55.776,-43.659)
C4': (-105.745,-54.520,-45.455)
C2': (-104.687,-52.469,-44.859)
C2: (-105.339,-48.199,-45.107)
N1: (-106.356,-47.488,-44.637)
N3: (-105.286,-49.479,-45.433)
N6: (-108.577,-47.415,-43.954)
N7: (-108.646,-50.373,-44.635)
N9: (-106.777,-51.303,-45.434)
O5': (-107.644,-55.000,-44.110)
O3': (-104.039,-54.555,-43.714)
OP1: (-113.481,-39.430,-42.340)
OP2: (-115.047,-41.392,-41.804)
C3': (-111.087,-43.145,-44.630)
C1': (-110.909,-45.112,-43.330)
C5': (-111.292,-41.657,-42.546)
O6: (-115.650,-48.632,-42.964)
O4': (-110.832,-44.002,-42.470)
C8: (-113.353,-45.139,-42.704)
C2: (-112.293,-49.134,-43.952)
C6: (-114.473,-48.386,-43.205)
C5: (-113.846,-47.159,-43.059)
C4: (-112.526,-47.049,-43.362)
P: (-113.665,-40.806,-41.844)
C4': (-110.600,-42.799,-43.225)
C2': (-110.722,-44.616,-44.761)
O2': (-109.362,-44.771,-45.124)
N1: (-113.605,-49.352,-43.675)
N2: (-111.582,-50.173,-44.382)
N3: (-111.691,-47.983,-43.809)
N7: (-114.371,-45.963,-42.644)
N9: (-112.212,-45.744,-43.141)
O5': (-112.694,-41.809,-42.610)
O3': (-110.498,-42.327,-45.632)
OP2: (-115.047,-41.392,-41.804)
C3': (-111.087,-43.145,-44.630)
C1': (-110.909,-45.112,-43.330)
C5': (-111.292,-41.657,-42.546)
O6: (-115.650,-48.632,-42.964)
O4': (-110.832,-44.002,-42.470)
C8: (-113.353,-45.139,-42.704)
C2: (-112.293,-49.134,-43.952)
C6: (-114.473,-48.386,-43.205)
C5: (-113.846,-47.159,-43.059)
C4: (-112.526,-47.049,-43.362)
P: (-113.665,-40.806,-41.844)
C4': (-110.600,-42.799,-43.225)
C2': (-110.722,-44.616,-44.761)
O2': (-109.362,-44.771,-45.124)
N1: (-113.605,-49.352,-43.675)
N2: (-111.582,-50.173,-44.382)
N3: (-111.691,-47.983,-43.809)
N7: (-114.371,-45.963,-42.644)
N9: (-112.212,-45.744,-43.141)
O5': (-112.694,-41.809,-42.610)
O3': (-110.498,-42.327,-45.632)
Image (generated by PyMOL):