Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M8Y:C6:C7
Extra
PDB:
ATOM 1 O3' A A 5 27.535 -8.264 57.148 1.00 39.96 O
ATOM 2 P C A 6 28.567 -7.047 56.925 1.00 47.15 P
ATOM 3 OP1 C A 6 28.605 -6.764 55.475 1.00 44.54 O
ATOM 4 OP2 C A 6 29.834 -7.328 57.652 1.00 45.72 O
ATOM 5 O5' C A 6 27.873 -5.819 57.660 1.00 50.01 O
ATOM 6 C5' C A 6 28.465 -4.527 57.632 1.00 52.78 C
ATOM 7 C4' C A 6 27.411 -3.484 57.359 1.00 54.78 C
ATOM 8 O4' C A 6 26.544 -3.339 58.513 1.00 54.56 O
ATOM 9 C3' C A 6 27.933 -2.081 57.135 1.00 55.26 C
ATOM 10 O3' C A 6 28.340 -1.952 55.784 1.00 54.02 O
ATOM 11 C2' C A 6 26.695 -1.240 57.414 1.00 55.53 C
ATOM 12 O2' C A 6 25.799 -1.252 56.318 1.00 57.55 O
ATOM 13 C1' C A 6 26.073 -2.003 58.584 1.00 54.78 C
ATOM 14 N1 C A 6 26.433 -1.460 59.899 1.00 54.65 N
ATOM 15 C2 C A 6 25.512 -0.636 60.567 1.00 55.66 C
ATOM 16 O2 C A 6 24.435 -0.363 60.010 1.00 55.38 O
ATOM 17 N3 C A 6 25.821 -0.162 61.801 1.00 55.34 N
ATOM 18 C4 C A 6 26.995 -0.473 62.361 1.00 54.48 C
ATOM 19 N4 C A 6 27.256 0.006 63.583 1.00 54.36 N
ATOM 20 C5 C A 6 27.954 -1.292 61.693 1.00 54.68 C
ATOM 21 C6 C A 6 27.635 -1.759 60.475 1.00 54.15 C
ATOM 22 P A A 7 29.674 -1.140 55.433 1.00 51.98 P
ATOM 23 OP1 A A 7 30.654 -2.116 54.885 1.00 51.67 O
ATOM 24 OP2 A A 7 30.027 -0.344 56.645 1.00 50.82 O
ATOM 25 O5' A A 7 29.207 -0.173 54.254 1.00 48.64 O
TER
ATOM 1 O3' C B 6 28.340 -1.952 55.784 1.00 54.02 O
ATOM 2 P A B 7 29.674 -1.140 55.433 1.00 51.98 P
ATOM 3 OP1 A B 7 30.654 -2.116 54.885 1.00 51.67 O
ATOM 4 OP2 A B 7 30.027 -0.344 56.645 1.00 50.82 O
ATOM 5 O5' A B 7 29.207 -0.173 54.254 1.00 48.64 O
ATOM 6 C5' A B 7 28.596 -0.714 53.084 1.00 46.49 C
ATOM 7 C4' A B 7 27.613 0.269 52.490 1.00 44.14 C
ATOM 8 O4' A B 7 26.532 0.510 53.427 1.00 42.52 O
ATOM 9 C3' A B 7 28.148 1.660 52.188 1.00 43.74 C
ATOM 10 O3' A B 7 28.811 1.700 50.937 1.00 44.28 O
ATOM 11 C2' A B 7 26.867 2.475 52.133 1.00 42.28 C
ATOM 12 O2' A B 7 26.185 2.314 50.905 1.00 43.52 O
ATOM 13 C1' A B 7 26.070 1.846 53.277 1.00 40.27 C
ATOM 14 N9 A B 7 26.281 2.559 54.537 1.00 35.56 N
ATOM 15 C8 A B 7 27.065 2.200 55.608 1.00 33.85 C
ATOM 16 N7 A B 7 27.042 3.067 56.593 1.00 31.41 N
ATOM 17 C5 A B 7 26.184 4.062 56.141 1.00 31.45 C
ATOM 18 C6 A B 7 25.734 5.260 56.717 1.00 29.05 C
ATOM 19 N6 A B 7 26.095 5.684 57.928 1.00 30.40 N
ATOM 20 N1 A B 7 24.886 6.021 55.999 1.00 27.42 N
ATOM 21 C2 A B 7 24.519 5.603 54.787 1.00 29.18 C
ATOM 22 N3 A B 7 24.868 4.502 54.138 1.00 31.36 N
ATOM 23 C4 A B 7 25.712 3.763 54.877 1.00 32.84 C
ATOM 24 P U B 8 30.201 2.487 50.800 1.00 45.09 P
ATOM 25 OP1 U B 8 30.813 1.971 49.561 1.00 45.15 O
ATOM 26 OP2 U B 8 30.943 2.394 52.075 1.00 41.37 O
ATOM 27 O5' U B 8 29.785 4.004 50.557 1.00 44.08 O
TER
ATOM 2 P C A 6 28.567 -7.047 56.925 1.00 47.15 P
ATOM 3 OP1 C A 6 28.605 -6.764 55.475 1.00 44.54 O
ATOM 4 OP2 C A 6 29.834 -7.328 57.652 1.00 45.72 O
ATOM 5 O5' C A 6 27.873 -5.819 57.660 1.00 50.01 O
ATOM 6 C5' C A 6 28.465 -4.527 57.632 1.00 52.78 C
ATOM 7 C4' C A 6 27.411 -3.484 57.359 1.00 54.78 C
ATOM 8 O4' C A 6 26.544 -3.339 58.513 1.00 54.56 O
ATOM 9 C3' C A 6 27.933 -2.081 57.135 1.00 55.26 C
ATOM 10 O3' C A 6 28.340 -1.952 55.784 1.00 54.02 O
ATOM 11 C2' C A 6 26.695 -1.240 57.414 1.00 55.53 C
ATOM 12 O2' C A 6 25.799 -1.252 56.318 1.00 57.55 O
ATOM 13 C1' C A 6 26.073 -2.003 58.584 1.00 54.78 C
ATOM 14 N1 C A 6 26.433 -1.460 59.899 1.00 54.65 N
ATOM 15 C2 C A 6 25.512 -0.636 60.567 1.00 55.66 C
ATOM 16 O2 C A 6 24.435 -0.363 60.010 1.00 55.38 O
ATOM 17 N3 C A 6 25.821 -0.162 61.801 1.00 55.34 N
ATOM 18 C4 C A 6 26.995 -0.473 62.361 1.00 54.48 C
ATOM 19 N4 C A 6 27.256 0.006 63.583 1.00 54.36 N
ATOM 20 C5 C A 6 27.954 -1.292 61.693 1.00 54.68 C
ATOM 21 C6 C A 6 27.635 -1.759 60.475 1.00 54.15 C
ATOM 22 P A A 7 29.674 -1.140 55.433 1.00 51.98 P
ATOM 23 OP1 A A 7 30.654 -2.116 54.885 1.00 51.67 O
ATOM 24 OP2 A A 7 30.027 -0.344 56.645 1.00 50.82 O
ATOM 25 O5' A A 7 29.207 -0.173 54.254 1.00 48.64 O
TER
ATOM 1 O3' C B 6 28.340 -1.952 55.784 1.00 54.02 O
ATOM 2 P A B 7 29.674 -1.140 55.433 1.00 51.98 P
ATOM 3 OP1 A B 7 30.654 -2.116 54.885 1.00 51.67 O
ATOM 4 OP2 A B 7 30.027 -0.344 56.645 1.00 50.82 O
ATOM 5 O5' A B 7 29.207 -0.173 54.254 1.00 48.64 O
ATOM 6 C5' A B 7 28.596 -0.714 53.084 1.00 46.49 C
ATOM 7 C4' A B 7 27.613 0.269 52.490 1.00 44.14 C
ATOM 8 O4' A B 7 26.532 0.510 53.427 1.00 42.52 O
ATOM 9 C3' A B 7 28.148 1.660 52.188 1.00 43.74 C
ATOM 10 O3' A B 7 28.811 1.700 50.937 1.00 44.28 O
ATOM 11 C2' A B 7 26.867 2.475 52.133 1.00 42.28 C
ATOM 12 O2' A B 7 26.185 2.314 50.905 1.00 43.52 O
ATOM 13 C1' A B 7 26.070 1.846 53.277 1.00 40.27 C
ATOM 14 N9 A B 7 26.281 2.559 54.537 1.00 35.56 N
ATOM 15 C8 A B 7 27.065 2.200 55.608 1.00 33.85 C
ATOM 16 N7 A B 7 27.042 3.067 56.593 1.00 31.41 N
ATOM 17 C5 A B 7 26.184 4.062 56.141 1.00 31.45 C
ATOM 18 C6 A B 7 25.734 5.260 56.717 1.00 29.05 C
ATOM 19 N6 A B 7 26.095 5.684 57.928 1.00 30.40 N
ATOM 20 N1 A B 7 24.886 6.021 55.999 1.00 27.42 N
ATOM 21 C2 A B 7 24.519 5.603 54.787 1.00 29.18 C
ATOM 22 N3 A B 7 24.868 4.502 54.138 1.00 31.36 N
ATOM 23 C4 A B 7 25.712 3.763 54.877 1.00 32.84 C
ATOM 24 P U B 8 30.201 2.487 50.800 1.00 45.09 P
ATOM 25 OP1 U B 8 30.813 1.971 49.561 1.00 45.15 O
ATOM 26 OP2 U B 8 30.943 2.394 52.075 1.00 41.37 O
ATOM 27 O5' U B 8 29.785 4.004 50.557 1.00 44.08 O
TER
Atoms:
C2: (25.512,-0.636,60.567)
OP1: (28.605,-6.764,55.475)
OP2: (29.834,-7.328,57.652)
C4: (26.995,-0.473,62.361)
O5': (27.873,-5.819,57.660)
C3': (27.933,-2.081,57.135)
C1': (26.073,-2.003,58.584)
O4': (26.544,-3.339,58.513)
C5': (28.465,-4.527,57.632)
P: (28.567,-7.047,56.925)
O2: (24.435,-0.363,60.010)
C4': (27.411,-3.484,57.359)
C2': (26.695,-1.240,57.414)
O2': (25.799,-1.252,56.318)
N1: (26.433,-1.460,59.899)
N3: (25.821,-0.162,61.801)
N4: (27.256,0.006,63.583)
C6: (27.635,-1.759,60.475)
C5: (27.954,-1.292,61.693)
O3': (28.340,-1.952,55.784)
OP1: (28.605,-6.764,55.475)
OP2: (29.834,-7.328,57.652)
C4: (26.995,-0.473,62.361)
O5': (27.873,-5.819,57.660)
C3': (27.933,-2.081,57.135)
C1': (26.073,-2.003,58.584)
O4': (26.544,-3.339,58.513)
C5': (28.465,-4.527,57.632)
P: (28.567,-7.047,56.925)
O2: (24.435,-0.363,60.010)
C4': (27.411,-3.484,57.359)
C2': (26.695,-1.240,57.414)
O2': (25.799,-1.252,56.318)
N1: (26.433,-1.460,59.899)
N3: (25.821,-0.162,61.801)
N4: (27.256,0.006,63.583)
C6: (27.635,-1.759,60.475)
C5: (27.954,-1.292,61.693)
O3': (28.340,-1.952,55.784)
OP1: (30.654,-2.116,54.885)
OP2: (30.027,-0.344,56.645)
C3': (28.148,1.660,52.188)
C1': (26.070,1.846,53.277)
C5': (28.596,-0.714,53.084)
O4': (26.532,0.510,53.427)
C8: (27.065,2.200,55.608)
O2': (26.185,2.314,50.905)
C6: (25.734,5.260,56.717)
C5: (26.184,4.062,56.141)
C4: (25.712,3.763,54.877)
P: (29.674,-1.140,55.433)
C4': (27.613,0.269,52.490)
C2': (26.867,2.475,52.133)
C2: (24.519,5.603,54.787)
N1: (24.886,6.021,55.999)
N3: (24.868,4.502,54.138)
N6: (26.095,5.684,57.928)
N7: (27.042,3.067,56.593)
N9: (26.281,2.559,54.537)
O5': (29.207,-0.173,54.254)
O3': (28.811,1.700,50.937)
OP2: (30.027,-0.344,56.645)
C3': (28.148,1.660,52.188)
C1': (26.070,1.846,53.277)
C5': (28.596,-0.714,53.084)
O4': (26.532,0.510,53.427)
C8: (27.065,2.200,55.608)
O2': (26.185,2.314,50.905)
C6: (25.734,5.260,56.717)
C5: (26.184,4.062,56.141)
C4: (25.712,3.763,54.877)
P: (29.674,-1.140,55.433)
C4': (27.613,0.269,52.490)
C2': (26.867,2.475,52.133)
C2: (24.519,5.603,54.787)
N1: (24.886,6.021,55.999)
N3: (24.868,4.502,54.138)
N6: (26.095,5.684,57.928)
N7: (27.042,3.067,56.593)
N9: (26.281,2.559,54.537)
O5': (29.207,-0.173,54.254)
O3': (28.811,1.700,50.937)
Image (generated by PyMOL):