Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A222:A424
Extra
PDB:
ATOM 1 O3' U A 221 50.103 107.592 21.256 1.00 49.76 O
ATOM 2 P A A 222 49.971 107.799 19.685 1.00 51.84 P
ATOM 3 OP1 A A 222 48.958 108.869 19.538 1.00 50.45 O
ATOM 4 OP2 A A 222 49.756 106.472 19.047 1.00 51.19 O
ATOM 5 O5' A A 222 51.412 108.315 19.247 1.00 52.23 O
ATOM 6 C5' A A 222 51.905 109.592 19.672 1.00 51.96 C
ATOM 7 C4' A A 222 53.374 109.656 19.432 1.00 51.73 C
ATOM 8 O4' A A 222 53.990 108.544 20.133 1.00 52.43 O
ATOM 9 C3' A A 222 53.744 109.398 17.992 1.00 52.62 C
ATOM 10 O3' A A 222 53.662 110.561 17.198 1.00 55.49 O
ATOM 11 C2' A A 222 55.161 108.860 18.088 1.00 52.09 C
ATOM 12 O2' A A 222 56.145 109.863 18.181 1.00 54.01 O
ATOM 13 C1' A A 222 55.084 108.047 19.377 1.00 51.03 C
ATOM 14 N9 A A 222 54.856 106.636 19.098 1.00 49.14 N
ATOM 15 C8 A A 222 53.661 105.979 18.899 1.00 47.97 C
ATOM 16 N7 A A 222 53.801 104.692 18.694 1.00 48.90 N
ATOM 17 C5 A A 222 55.178 104.489 18.760 1.00 48.37 C
ATOM 18 C6 A A 222 55.973 103.336 18.654 1.00 49.23 C
ATOM 19 N6 A A 222 55.470 102.112 18.471 1.00 50.65 N
ATOM 20 N1 A A 222 57.315 103.482 18.755 1.00 48.32 N
ATOM 21 C2 A A 222 57.810 104.704 18.957 1.00 47.74 C
ATOM 22 N3 A A 222 57.169 105.861 19.091 1.00 47.20 N
ATOM 23 C4 A A 222 55.838 105.682 18.987 1.00 48.70 C
ATOM 24 P C A 223 53.846 110.433 15.610 1.00 57.83 P
ATOM 25 OP1 C A 223 53.707 111.778 14.998 1.00 55.82 O
ATOM 26 OP2 C A 223 52.953 109.332 15.177 1.00 58.39 O
ATOM 27 O5' C A 223 55.353 109.932 15.464 1.00 56.73 O
TER
ATOM 1 O3' A B 423 60.944 117.525 16.945 1.00 55.17 O
ATOM 2 P A B 424 60.162 117.387 18.336 1.00 55.23 P
ATOM 3 OP1 A B 424 59.214 118.520 18.520 1.00 56.08 O
ATOM 4 OP2 A B 424 61.152 117.085 19.395 1.00 56.55 O
ATOM 5 O5' A B 424 59.264 116.111 18.067 1.00 55.25 O
ATOM 6 C5' A B 424 58.083 116.228 17.264 1.00 53.93 C
ATOM 7 C4' A B 424 57.258 114.987 17.405 1.00 52.91 C
ATOM 8 O4' A B 424 58.003 113.874 16.853 1.00 51.30 O
ATOM 9 C3' A B 424 56.968 114.584 18.842 1.00 51.87 C
ATOM 10 O3' A B 424 55.835 115.287 19.348 1.00 52.46 O
ATOM 11 C2' A B 424 56.766 113.082 18.726 1.00 50.29 C
ATOM 12 O2' A B 424 55.494 112.751 18.203 1.00 50.41 O
ATOM 13 C1' A B 424 57.794 112.730 17.652 1.00 49.67 C
ATOM 14 N9 A B 424 59.096 112.287 18.122 1.00 47.89 N
ATOM 15 C8 A B 424 60.161 113.064 18.473 1.00 48.13 C
ATOM 16 N7 A B 424 61.251 112.379 18.726 1.00 48.32 N
ATOM 17 C5 A B 424 60.862 111.060 18.556 1.00 45.95 C
ATOM 18 C6 A B 424 61.565 109.847 18.661 1.00 45.18 C
ATOM 19 N6 A B 424 62.864 109.773 18.950 1.00 42.60 N
ATOM 20 N1 A B 424 60.880 108.705 18.452 1.00 44.98 N
ATOM 21 C2 A B 424 59.582 108.794 18.154 1.00 45.51 C
ATOM 22 N3 A B 424 58.815 109.876 18.012 1.00 44.91 N
ATOM 23 C4 A B 424 59.526 110.988 18.225 1.00 46.03 C
ATOM 24 P A B 425 55.728 115.585 20.923 1.00 54.44 P
ATOM 25 OP1 A B 425 54.520 116.417 21.179 1.00 54.29 O
ATOM 26 OP2 A B 425 57.047 116.033 21.439 1.00 55.00 O
ATOM 27 O5' A B 425 55.433 114.148 21.530 1.00 53.92 O
TER
ATOM 2 P A A 222 49.971 107.799 19.685 1.00 51.84 P
ATOM 3 OP1 A A 222 48.958 108.869 19.538 1.00 50.45 O
ATOM 4 OP2 A A 222 49.756 106.472 19.047 1.00 51.19 O
ATOM 5 O5' A A 222 51.412 108.315 19.247 1.00 52.23 O
ATOM 6 C5' A A 222 51.905 109.592 19.672 1.00 51.96 C
ATOM 7 C4' A A 222 53.374 109.656 19.432 1.00 51.73 C
ATOM 8 O4' A A 222 53.990 108.544 20.133 1.00 52.43 O
ATOM 9 C3' A A 222 53.744 109.398 17.992 1.00 52.62 C
ATOM 10 O3' A A 222 53.662 110.561 17.198 1.00 55.49 O
ATOM 11 C2' A A 222 55.161 108.860 18.088 1.00 52.09 C
ATOM 12 O2' A A 222 56.145 109.863 18.181 1.00 54.01 O
ATOM 13 C1' A A 222 55.084 108.047 19.377 1.00 51.03 C
ATOM 14 N9 A A 222 54.856 106.636 19.098 1.00 49.14 N
ATOM 15 C8 A A 222 53.661 105.979 18.899 1.00 47.97 C
ATOM 16 N7 A A 222 53.801 104.692 18.694 1.00 48.90 N
ATOM 17 C5 A A 222 55.178 104.489 18.760 1.00 48.37 C
ATOM 18 C6 A A 222 55.973 103.336 18.654 1.00 49.23 C
ATOM 19 N6 A A 222 55.470 102.112 18.471 1.00 50.65 N
ATOM 20 N1 A A 222 57.315 103.482 18.755 1.00 48.32 N
ATOM 21 C2 A A 222 57.810 104.704 18.957 1.00 47.74 C
ATOM 22 N3 A A 222 57.169 105.861 19.091 1.00 47.20 N
ATOM 23 C4 A A 222 55.838 105.682 18.987 1.00 48.70 C
ATOM 24 P C A 223 53.846 110.433 15.610 1.00 57.83 P
ATOM 25 OP1 C A 223 53.707 111.778 14.998 1.00 55.82 O
ATOM 26 OP2 C A 223 52.953 109.332 15.177 1.00 58.39 O
ATOM 27 O5' C A 223 55.353 109.932 15.464 1.00 56.73 O
TER
ATOM 1 O3' A B 423 60.944 117.525 16.945 1.00 55.17 O
ATOM 2 P A B 424 60.162 117.387 18.336 1.00 55.23 P
ATOM 3 OP1 A B 424 59.214 118.520 18.520 1.00 56.08 O
ATOM 4 OP2 A B 424 61.152 117.085 19.395 1.00 56.55 O
ATOM 5 O5' A B 424 59.264 116.111 18.067 1.00 55.25 O
ATOM 6 C5' A B 424 58.083 116.228 17.264 1.00 53.93 C
ATOM 7 C4' A B 424 57.258 114.987 17.405 1.00 52.91 C
ATOM 8 O4' A B 424 58.003 113.874 16.853 1.00 51.30 O
ATOM 9 C3' A B 424 56.968 114.584 18.842 1.00 51.87 C
ATOM 10 O3' A B 424 55.835 115.287 19.348 1.00 52.46 O
ATOM 11 C2' A B 424 56.766 113.082 18.726 1.00 50.29 C
ATOM 12 O2' A B 424 55.494 112.751 18.203 1.00 50.41 O
ATOM 13 C1' A B 424 57.794 112.730 17.652 1.00 49.67 C
ATOM 14 N9 A B 424 59.096 112.287 18.122 1.00 47.89 N
ATOM 15 C8 A B 424 60.161 113.064 18.473 1.00 48.13 C
ATOM 16 N7 A B 424 61.251 112.379 18.726 1.00 48.32 N
ATOM 17 C5 A B 424 60.862 111.060 18.556 1.00 45.95 C
ATOM 18 C6 A B 424 61.565 109.847 18.661 1.00 45.18 C
ATOM 19 N6 A B 424 62.864 109.773 18.950 1.00 42.60 N
ATOM 20 N1 A B 424 60.880 108.705 18.452 1.00 44.98 N
ATOM 21 C2 A B 424 59.582 108.794 18.154 1.00 45.51 C
ATOM 22 N3 A B 424 58.815 109.876 18.012 1.00 44.91 N
ATOM 23 C4 A B 424 59.526 110.988 18.225 1.00 46.03 C
ATOM 24 P A B 425 55.728 115.585 20.923 1.00 54.44 P
ATOM 25 OP1 A B 425 54.520 116.417 21.179 1.00 54.29 O
ATOM 26 OP2 A B 425 57.047 116.033 21.439 1.00 55.00 O
ATOM 27 O5' A B 425 55.433 114.148 21.530 1.00 53.92 O
TER
Atoms:
OP1: (48.958,108.869,19.538)
OP2: (49.756,106.472,19.047)
C3': (53.744,109.398,17.992)
C1': (55.084,108.047,19.377)
C5': (51.905,109.592,19.672)
O4': (53.990,108.544,20.133)
C8: (53.661,105.979,18.899)
O2': (56.145,109.863,18.181)
C6: (55.973,103.336,18.654)
C5: (55.178,104.489,18.760)
C4: (55.838,105.682,18.987)
P: (49.971,107.799,19.685)
C4': (53.374,109.656,19.432)
C2': (55.161,108.860,18.088)
C2: (57.810,104.704,18.957)
N1: (57.315,103.482,18.755)
N3: (57.169,105.861,19.091)
N6: (55.470,102.112,18.471)
N7: (53.801,104.692,18.694)
N9: (54.856,106.636,19.098)
O5': (51.412,108.315,19.247)
O3': (53.662,110.561,17.198)
OP2: (49.756,106.472,19.047)
C3': (53.744,109.398,17.992)
C1': (55.084,108.047,19.377)
C5': (51.905,109.592,19.672)
O4': (53.990,108.544,20.133)
C8: (53.661,105.979,18.899)
O2': (56.145,109.863,18.181)
C6: (55.973,103.336,18.654)
C5: (55.178,104.489,18.760)
C4: (55.838,105.682,18.987)
P: (49.971,107.799,19.685)
C4': (53.374,109.656,19.432)
C2': (55.161,108.860,18.088)
C2: (57.810,104.704,18.957)
N1: (57.315,103.482,18.755)
N3: (57.169,105.861,19.091)
N6: (55.470,102.112,18.471)
N7: (53.801,104.692,18.694)
N9: (54.856,106.636,19.098)
O5': (51.412,108.315,19.247)
O3': (53.662,110.561,17.198)
OP1: (59.214,118.520,18.520)
OP2: (61.152,117.085,19.395)
C3': (56.968,114.584,18.842)
C1': (57.794,112.730,17.652)
C5': (58.083,116.228,17.264)
O4': (58.003,113.874,16.853)
C8: (60.161,113.064,18.473)
O2': (55.494,112.751,18.203)
C6: (61.565,109.847,18.661)
C5: (60.862,111.060,18.556)
C4: (59.526,110.988,18.225)
P: (60.162,117.387,18.336)
C4': (57.258,114.987,17.405)
C2': (56.766,113.082,18.726)
C2: (59.582,108.794,18.154)
N1: (60.880,108.705,18.452)
N3: (58.815,109.876,18.012)
N6: (62.864,109.773,18.950)
N7: (61.251,112.379,18.726)
N9: (59.096,112.287,18.122)
O5': (59.264,116.111,18.067)
O3': (55.835,115.287,19.348)
OP2: (61.152,117.085,19.395)
C3': (56.968,114.584,18.842)
C1': (57.794,112.730,17.652)
C5': (58.083,116.228,17.264)
O4': (58.003,113.874,16.853)
C8: (60.161,113.064,18.473)
O2': (55.494,112.751,18.203)
C6: (61.565,109.847,18.661)
C5: (60.862,111.060,18.556)
C4: (59.526,110.988,18.225)
P: (60.162,117.387,18.336)
C4': (57.258,114.987,17.405)
C2': (56.766,113.082,18.726)
C2: (59.582,108.794,18.154)
N1: (60.880,108.705,18.452)
N3: (58.815,109.876,18.012)
N6: (62.864,109.773,18.950)
N7: (61.251,112.379,18.726)
N9: (59.096,112.287,18.122)
O5': (59.264,116.111,18.067)
O3': (55.835,115.287,19.348)
Image (generated by PyMOL):