ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1NJI:A222:A424

Extra

PDB:
ATOM 1 O3' U A 221 49.765 107.519 20.844 1.00 33.25 O
ATOM 2 P A A 222 49.603 107.707 19.268 1.00 34.04 P
ATOM 3 OP1 A A 222 48.646 108.830 19.089 1.00 30.69 O
ATOM 4 OP2 A A 222 49.301 106.372 18.695 1.00 33.14 O
ATOM 5 O5' A A 222 51.054 108.153 18.799 1.00 33.26 O
ATOM 6 C5' A A 222 51.578 109.425 19.205 1.00 34.57 C
ATOM 7 C4' A A 222 53.056 109.461 18.988 1.00 35.21 C
ATOM 8 O4' A A 222 53.663 108.385 19.750 1.00 35.54 O
ATOM 9 C3' A A 222 53.446 109.150 17.561 1.00 36.32 C
ATOM 10 O3' A A 222 53.319 110.309 16.749 1.00 38.99 O
ATOM 11 C2' A A 222 54.873 108.646 17.719 1.00 35.60 C
ATOM 12 O2' A A 222 55.791 109.704 17.877 1.00 36.30 O
ATOM 13 C1' A A 222 54.762 107.855 19.027 1.00 34.80 C
ATOM 14 N9 A A 222 54.534 106.428 18.811 1.00 32.42 N
ATOM 15 C8 A A 222 53.338 105.765 18.704 1.00 32.12 C
ATOM 16 N7 A A 222 53.469 104.481 18.469 1.00 32.38 N
ATOM 17 C5 A A 222 54.841 104.286 18.425 1.00 30.64 C
ATOM 18 C6 A A 222 55.624 103.147 18.197 1.00 31.33 C
ATOM 19 N6 A A 222 55.113 101.947 17.912 1.00 33.31 N
ATOM 20 N1 A A 222 56.969 103.283 18.251 1.00 30.84 N
ATOM 21 C2 A A 222 57.475 104.497 18.485 1.00 30.72 C
ATOM 22 N3 A A 222 56.842 105.649 18.688 1.00 30.25 N
ATOM 23 C4 A A 222 55.510 105.472 18.649 1.00 31.53 C
ATOM 24 P C A 223 53.438 110.174 15.156 1.00 41.45 P
ATOM 25 OP1 C A 223 53.261 111.531 14.576 1.00 42.09 O
ATOM 26 OP2 C A 223 52.574 109.058 14.691 1.00 41.53 O
ATOM 27 O5' C A 223 54.957 109.743 14.974 1.00 40.98 O
TER

ATOM 1 O3' A B 423 60.649 117.374 16.460 1.00 39.71 O
ATOM 2 P A B 424 59.850 117.254 17.837 1.00 41.80 P
ATOM 3 OP1 A B 424 59.014 118.470 17.965 1.00 42.69 O
ATOM 4 OP2 A B 424 60.818 116.905 18.920 1.00 43.88 O
ATOM 5 O5' A B 424 58.885 116.015 17.587 1.00 40.34 O
ATOM 6 C5' A B 424 57.714 116.132 16.754 1.00 38.97 C
ATOM 7 C4' A B 424 56.879 114.888 16.891 1.00 38.09 C
ATOM 8 O4' A B 424 57.631 113.760 16.384 1.00 37.12 O
ATOM 9 C3' A B 424 56.600 114.531 18.339 1.00 37.95 C
ATOM 10 O3' A B 424 55.471 115.226 18.842 1.00 39.44 O
ATOM 11 C2' A B 424 56.415 113.025 18.297 1.00 36.47 C
ATOM 12 O2' A B 424 55.112 112.675 17.868 1.00 35.14 O
ATOM 13 C1' A B 424 57.437 112.636 17.225 1.00 35.69 C
ATOM 14 N9 A B 424 58.761 112.193 17.669 1.00 34.28 N
ATOM 15 C8 A B 424 59.860 112.965 17.949 1.00 34.34 C
ATOM 16 N7 A B 424 60.951 112.272 18.167 1.00 33.07 N
ATOM 17 C5 A B 424 60.535 110.955 18.060 1.00 32.10 C
ATOM 18 C6 A B 424 61.220 109.730 18.164 1.00 32.33 C
ATOM 19 N6 A B 424 62.534 109.623 18.373 1.00 32.67 N
ATOM 20 N1 A B 424 60.500 108.597 18.030 1.00 32.33 N
ATOM 21 C2 A B 424 59.189 108.698 17.792 1.00 33.42 C
ATOM 22 N3 A B 424 58.441 109.783 17.653 1.00 32.28 N
ATOM 23 C4 A B 424 59.180 110.892 17.798 1.00 32.73 C
ATOM 24 P A B 425 55.356 115.489 20.415 1.00 42.55 P
ATOM 25 OP1 A B 425 54.162 116.338 20.648 1.00 42.10 O
ATOM 26 OP2 A B 425 56.682 115.914 20.935 1.00 40.81 O
ATOM 27 O5' A B 425 55.057 114.039 20.988 1.00 42.64 O
TER

Atoms:
OP1: (48.646,108.830,19.089)
OP2: (49.301,106.372,18.695)
C3': (53.446,109.150,17.561)
C1': (54.762,107.855,19.027)
C5': (51.578,109.425,19.205)
O4': (53.663,108.385,19.750)
C8: (53.338,105.765,18.704)
O2': (55.791,109.704,17.877)
C6: (55.624,103.147,18.197)
C5: (54.841,104.286,18.425)
C4: (55.510,105.472,18.649)
P: (49.603,107.707,19.268)
C4': (53.056,109.461,18.988)
C2': (54.873,108.646,17.719)
C2: (57.475,104.497,18.485)
N1: (56.969,103.283,18.251)
N3: (56.842,105.649,18.688)
N6: (55.113,101.947,17.912)
N7: (53.469,104.481,18.469)
N9: (54.534,106.428,18.811)
O5': (51.054,108.153,18.799)
O3': (53.319,110.309,16.749)
OP1: (59.014,118.470,17.965)
OP2: (60.818,116.905,18.920)
C3': (56.600,114.531,18.339)
C1': (57.437,112.636,17.225)
C5': (57.714,116.132,16.754)
O4': (57.631,113.760,16.384)
C8: (59.860,112.965,17.949)
O2': (55.112,112.675,17.868)
C6: (61.220,109.730,18.164)
C5: (60.535,110.955,18.060)
C4: (59.180,110.892,17.798)
P: (59.850,117.254,17.837)
C4': (56.879,114.888,16.891)
C2': (56.415,113.025,18.297)
C2: (59.189,108.698,17.792)
N1: (60.500,108.597,18.030)
N3: (58.441,109.783,17.653)
N6: (62.534,109.623,18.373)
N7: (60.951,112.272,18.167)
N9: (58.761,112.193,17.669)
O5': (58.885,116.015,17.587)
O3': (55.471,115.226,18.842)
Image (generated by PyMOL):
PyMOL image
show in jmol