Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1XMQ:A119:A253
Extra
PDB:
ATOM 1 O3' G A 118 107.677 73.385 -25.102 1.00 54.37 O
ATOM 2 P A A 119 108.118 72.414 -26.340 1.00 48.90 P
ATOM 3 OP1 A A 119 109.382 72.946 -26.879 1.00 49.22 O
ATOM 4 OP2 A A 119 107.022 72.088 -27.270 1.00 49.22 O
ATOM 5 O5' A A 119 108.510 71.057 -25.612 1.00 48.90 O
ATOM 6 C5' A A 119 108.306 69.795 -26.247 1.00 48.90 C
ATOM 7 C4' A A 119 108.787 68.695 -25.347 1.00 48.90 C
ATOM 8 O4' A A 119 110.224 68.803 -25.212 1.00 48.90 O
ATOM 9 C3' A A 119 108.219 68.694 -23.936 1.00 48.90 C
ATOM 10 O3' A A 119 108.049 67.331 -23.545 1.00 48.90 O
ATOM 11 C2' A A 119 109.323 69.362 -23.125 1.00 48.90 C
ATOM 12 O2' A A 119 109.358 68.950 -21.780 1.00 48.90 O
ATOM 13 C1' A A 119 110.575 68.881 -23.852 1.00 48.90 C
ATOM 14 N9 A A 119 111.735 69.770 -23.737 1.00 49.22 N
ATOM 15 C8 A A 119 111.850 71.039 -24.241 1.00 49.22 C
ATOM 16 N7 A A 119 113.016 71.594 -24.018 1.00 49.22 N
ATOM 17 C5 A A 119 113.717 70.628 -23.316 1.00 49.22 C
ATOM 18 C6 A A 119 115.016 70.607 -22.802 1.00 49.22 C
ATOM 19 N6 A A 119 115.864 71.633 -22.912 1.00 49.22 N
ATOM 20 N1 A A 119 115.420 69.489 -22.162 1.00 49.22 N
ATOM 21 C2 A A 119 114.557 68.476 -22.044 1.00 49.22 C
ATOM 22 N3 A A 119 113.305 68.380 -22.479 1.00 49.22 N
ATOM 23 C4 A A 119 112.940 69.502 -23.122 1.00 49.22 C
ATOM 24 P C A 120 106.897 66.916 -22.492 1.00 50.54 P
ATOM 25 OP1 C A 120 106.929 65.430 -22.462 1.00 36.19 O
ATOM 26 OP2 C A 120 105.609 67.610 -22.780 1.00 36.19 O
ATOM 27 O5' C A 120 107.458 67.461 -21.102 1.00 50.54 O
TER
ATOM 1 O3' A B 252 109.381 59.941 -19.922 1.00 46.24 O
ATOM 2 P A B 253 109.897 59.902 -21.435 1.00 39.12 P
ATOM 3 OP1 A B 253 108.776 59.719 -22.404 1.00 47.07 O
ATOM 4 OP2 A B 253 111.040 58.966 -21.464 1.00 47.07 O
ATOM 5 O5' A B 253 110.447 61.375 -21.630 1.00 39.12 O
ATOM 6 C5' A B 253 109.545 62.475 -21.757 1.00 39.12 C
ATOM 7 C4' A B 253 110.312 63.728 -22.063 1.00 39.12 C
ATOM 8 O4' A B 253 111.002 64.175 -20.870 1.00 39.12 O
ATOM 9 C3' A B 253 111.390 63.588 -23.128 1.00 39.12 C
ATOM 10 O3' A B 253 110.811 63.729 -24.423 1.00 39.12 O
ATOM 11 C2' A B 253 112.357 64.711 -22.762 1.00 39.12 C
ATOM 12 O2' A B 253 111.943 65.973 -23.253 1.00 39.12 O
ATOM 13 C1' A B 253 112.249 64.735 -21.232 1.00 39.12 C
ATOM 14 N9 A B 253 113.294 63.967 -20.561 1.00 47.07 N
ATOM 15 C8 A B 253 113.440 62.605 -20.522 1.00 47.07 C
ATOM 16 N7 A B 253 114.496 62.203 -19.864 1.00 47.07 N
ATOM 17 C5 A B 253 115.079 63.379 -19.433 1.00 47.07 C
ATOM 18 C6 A B 253 116.225 63.628 -18.696 1.00 47.07 C
ATOM 19 N6 A B 253 117.022 62.668 -18.238 1.00 47.07 N
ATOM 20 N1 A B 253 116.533 64.912 -18.433 1.00 47.07 N
ATOM 21 C2 A B 253 115.721 65.872 -18.887 1.00 47.07 C
ATOM 22 N3 A B 253 114.611 65.762 -19.598 1.00 47.07 N
ATOM 23 C4 A B 253 114.344 64.473 -19.844 1.00 47.07 C
ATOM 24 P U B 254 111.686 63.425 -25.733 1.00 40.51 P
ATOM 25 OP1 U B 254 110.763 63.224 -26.881 1.00 69.98 O
ATOM 26 OP2 U B 254 112.688 62.388 -25.409 1.00 69.98 O
ATOM 27 O5' U B 254 112.491 64.772 -25.977 1.00 40.51 O
TER
ATOM 2 P A A 119 108.118 72.414 -26.340 1.00 48.90 P
ATOM 3 OP1 A A 119 109.382 72.946 -26.879 1.00 49.22 O
ATOM 4 OP2 A A 119 107.022 72.088 -27.270 1.00 49.22 O
ATOM 5 O5' A A 119 108.510 71.057 -25.612 1.00 48.90 O
ATOM 6 C5' A A 119 108.306 69.795 -26.247 1.00 48.90 C
ATOM 7 C4' A A 119 108.787 68.695 -25.347 1.00 48.90 C
ATOM 8 O4' A A 119 110.224 68.803 -25.212 1.00 48.90 O
ATOM 9 C3' A A 119 108.219 68.694 -23.936 1.00 48.90 C
ATOM 10 O3' A A 119 108.049 67.331 -23.545 1.00 48.90 O
ATOM 11 C2' A A 119 109.323 69.362 -23.125 1.00 48.90 C
ATOM 12 O2' A A 119 109.358 68.950 -21.780 1.00 48.90 O
ATOM 13 C1' A A 119 110.575 68.881 -23.852 1.00 48.90 C
ATOM 14 N9 A A 119 111.735 69.770 -23.737 1.00 49.22 N
ATOM 15 C8 A A 119 111.850 71.039 -24.241 1.00 49.22 C
ATOM 16 N7 A A 119 113.016 71.594 -24.018 1.00 49.22 N
ATOM 17 C5 A A 119 113.717 70.628 -23.316 1.00 49.22 C
ATOM 18 C6 A A 119 115.016 70.607 -22.802 1.00 49.22 C
ATOM 19 N6 A A 119 115.864 71.633 -22.912 1.00 49.22 N
ATOM 20 N1 A A 119 115.420 69.489 -22.162 1.00 49.22 N
ATOM 21 C2 A A 119 114.557 68.476 -22.044 1.00 49.22 C
ATOM 22 N3 A A 119 113.305 68.380 -22.479 1.00 49.22 N
ATOM 23 C4 A A 119 112.940 69.502 -23.122 1.00 49.22 C
ATOM 24 P C A 120 106.897 66.916 -22.492 1.00 50.54 P
ATOM 25 OP1 C A 120 106.929 65.430 -22.462 1.00 36.19 O
ATOM 26 OP2 C A 120 105.609 67.610 -22.780 1.00 36.19 O
ATOM 27 O5' C A 120 107.458 67.461 -21.102 1.00 50.54 O
TER
ATOM 1 O3' A B 252 109.381 59.941 -19.922 1.00 46.24 O
ATOM 2 P A B 253 109.897 59.902 -21.435 1.00 39.12 P
ATOM 3 OP1 A B 253 108.776 59.719 -22.404 1.00 47.07 O
ATOM 4 OP2 A B 253 111.040 58.966 -21.464 1.00 47.07 O
ATOM 5 O5' A B 253 110.447 61.375 -21.630 1.00 39.12 O
ATOM 6 C5' A B 253 109.545 62.475 -21.757 1.00 39.12 C
ATOM 7 C4' A B 253 110.312 63.728 -22.063 1.00 39.12 C
ATOM 8 O4' A B 253 111.002 64.175 -20.870 1.00 39.12 O
ATOM 9 C3' A B 253 111.390 63.588 -23.128 1.00 39.12 C
ATOM 10 O3' A B 253 110.811 63.729 -24.423 1.00 39.12 O
ATOM 11 C2' A B 253 112.357 64.711 -22.762 1.00 39.12 C
ATOM 12 O2' A B 253 111.943 65.973 -23.253 1.00 39.12 O
ATOM 13 C1' A B 253 112.249 64.735 -21.232 1.00 39.12 C
ATOM 14 N9 A B 253 113.294 63.967 -20.561 1.00 47.07 N
ATOM 15 C8 A B 253 113.440 62.605 -20.522 1.00 47.07 C
ATOM 16 N7 A B 253 114.496 62.203 -19.864 1.00 47.07 N
ATOM 17 C5 A B 253 115.079 63.379 -19.433 1.00 47.07 C
ATOM 18 C6 A B 253 116.225 63.628 -18.696 1.00 47.07 C
ATOM 19 N6 A B 253 117.022 62.668 -18.238 1.00 47.07 N
ATOM 20 N1 A B 253 116.533 64.912 -18.433 1.00 47.07 N
ATOM 21 C2 A B 253 115.721 65.872 -18.887 1.00 47.07 C
ATOM 22 N3 A B 253 114.611 65.762 -19.598 1.00 47.07 N
ATOM 23 C4 A B 253 114.344 64.473 -19.844 1.00 47.07 C
ATOM 24 P U B 254 111.686 63.425 -25.733 1.00 40.51 P
ATOM 25 OP1 U B 254 110.763 63.224 -26.881 1.00 69.98 O
ATOM 26 OP2 U B 254 112.688 62.388 -25.409 1.00 69.98 O
ATOM 27 O5' U B 254 112.491 64.772 -25.977 1.00 40.51 O
TER
Atoms:
OP1: (109.382,72.946,-26.879)
OP2: (107.022,72.088,-27.270)
C3': (108.219,68.694,-23.936)
C1': (110.575,68.881,-23.852)
C5': (108.306,69.795,-26.247)
O4': (110.224,68.803,-25.212)
C8: (111.850,71.039,-24.241)
O2': (109.358,68.950,-21.780)
C6: (115.016,70.607,-22.802)
C5: (113.717,70.628,-23.316)
C4: (112.940,69.502,-23.122)
P: (108.118,72.414,-26.340)
C4': (108.787,68.695,-25.347)
C2': (109.323,69.362,-23.125)
C2: (114.557,68.476,-22.044)
N1: (115.420,69.489,-22.162)
N3: (113.305,68.380,-22.479)
N6: (115.864,71.633,-22.912)
N7: (113.016,71.594,-24.018)
N9: (111.735,69.770,-23.737)
O5': (108.510,71.057,-25.612)
O3': (108.049,67.331,-23.545)
OP2: (107.022,72.088,-27.270)
C3': (108.219,68.694,-23.936)
C1': (110.575,68.881,-23.852)
C5': (108.306,69.795,-26.247)
O4': (110.224,68.803,-25.212)
C8: (111.850,71.039,-24.241)
O2': (109.358,68.950,-21.780)
C6: (115.016,70.607,-22.802)
C5: (113.717,70.628,-23.316)
C4: (112.940,69.502,-23.122)
P: (108.118,72.414,-26.340)
C4': (108.787,68.695,-25.347)
C2': (109.323,69.362,-23.125)
C2: (114.557,68.476,-22.044)
N1: (115.420,69.489,-22.162)
N3: (113.305,68.380,-22.479)
N6: (115.864,71.633,-22.912)
N7: (113.016,71.594,-24.018)
N9: (111.735,69.770,-23.737)
O5': (108.510,71.057,-25.612)
O3': (108.049,67.331,-23.545)
OP1: (108.776,59.719,-22.404)
OP2: (111.040,58.966,-21.464)
C3': (111.390,63.588,-23.128)
C1': (112.249,64.735,-21.232)
C5': (109.545,62.475,-21.757)
O4': (111.002,64.175,-20.870)
C8: (113.440,62.605,-20.522)
O2': (111.943,65.973,-23.253)
C6: (116.225,63.628,-18.696)
C5: (115.079,63.379,-19.433)
C4: (114.344,64.473,-19.844)
P: (109.897,59.902,-21.435)
C4': (110.312,63.728,-22.063)
C2': (112.357,64.711,-22.762)
C2: (115.721,65.872,-18.887)
N1: (116.533,64.912,-18.433)
N3: (114.611,65.762,-19.598)
N6: (117.022,62.668,-18.238)
N7: (114.496,62.203,-19.864)
N9: (113.294,63.967,-20.561)
O5': (110.447,61.375,-21.630)
O3': (110.811,63.729,-24.423)
OP2: (111.040,58.966,-21.464)
C3': (111.390,63.588,-23.128)
C1': (112.249,64.735,-21.232)
C5': (109.545,62.475,-21.757)
O4': (111.002,64.175,-20.870)
C8: (113.440,62.605,-20.522)
O2': (111.943,65.973,-23.253)
C6: (116.225,63.628,-18.696)
C5: (115.079,63.379,-19.433)
C4: (114.344,64.473,-19.844)
P: (109.897,59.902,-21.435)
C4': (110.312,63.728,-22.063)
C2': (112.357,64.711,-22.762)
C2: (115.721,65.872,-18.887)
N1: (116.533,64.912,-18.433)
N3: (114.611,65.762,-19.598)
N6: (117.022,62.668,-18.238)
N7: (114.496,62.203,-19.864)
N9: (113.294,63.967,-20.561)
O5': (110.447,61.375,-21.630)
O3': (110.811,63.729,-24.423)
Image (generated by PyMOL):