Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 49.886 107.092 20.825 1.00 33.22 O
ATOM 2 P A A 222 49.682 107.222 19.241 1.00 35.42 P
ATOM 3 OP1 A A 222 48.705 108.330 19.065 1.00 34.07 O
ATOM 4 OP2 A A 222 49.406 105.892 18.639 1.00 33.54 O
ATOM 5 O5' A A 222 51.110 107.694 18.723 1.00 34.26 O
ATOM 6 C5' A A 222 51.672 108.935 19.188 1.00 34.61 C
ATOM 7 C4' A A 222 53.150 108.964 18.935 1.00 33.33 C
ATOM 8 O4' A A 222 53.803 107.927 19.711 1.00 33.01 O
ATOM 9 C3' A A 222 53.555 108.657 17.510 1.00 34.77 C
ATOM 10 O3' A A 222 53.379 109.788 16.668 1.00 39.69 O
ATOM 11 C2' A A 222 55.002 108.213 17.683 1.00 33.78 C
ATOM 12 O2' A A 222 55.909 109.279 17.881 1.00 33.10 O
ATOM 13 C1' A A 222 54.902 107.406 18.978 1.00 32.53 C
ATOM 14 N9 A A 222 54.650 105.993 18.711 1.00 30.65 N
ATOM 15 C8 A A 222 53.438 105.359 18.588 1.00 31.87 C
ATOM 16 N7 A A 222 53.538 104.079 18.322 1.00 30.92 N
ATOM 17 C5 A A 222 54.905 103.854 18.272 1.00 29.22 C
ATOM 18 C6 A A 222 55.660 102.702 18.026 1.00 30.53 C
ATOM 19 N6 A A 222 55.121 101.509 17.770 1.00 32.55 N
ATOM 20 N1 A A 222 57.007 102.814 18.047 1.00 30.55 N
ATOM 21 C2 A A 222 57.543 104.013 18.293 1.00 30.67 C
ATOM 22 N3 A A 222 56.937 105.172 18.536 1.00 30.62 N
ATOM 23 C4 A A 222 55.603 105.022 18.513 1.00 30.13 C
ATOM 24 P C A 223 53.583 109.636 15.080 1.00 43.09 P
ATOM 25 OP1 C A 223 53.459 111.000 14.503 1.00 45.36 O
ATOM 26 OP2 C A 223 52.749 108.526 14.539 1.00 41.39 O
ATOM 27 O5' C A 223 55.103 109.197 14.970 1.00 41.98 O
TER
ATOM 1 O3' A B 423 60.680 116.876 16.525 1.00 38.43 O
ATOM 2 P A B 424 59.938 116.775 17.943 1.00 39.70 P
ATOM 3 OP1 A B 424 59.128 118.007 18.101 1.00 40.65 O
ATOM 4 OP2 A B 424 60.951 116.421 18.967 1.00 39.93 O
ATOM 5 O5' A B 424 58.948 115.542 17.777 1.00 40.21 O
ATOM 6 C5' A B 424 57.783 115.624 16.942 1.00 38.72 C
ATOM 7 C4' A B 424 57.000 114.343 17.049 1.00 38.95 C
ATOM 8 O4' A B 424 57.774 113.263 16.470 1.00 37.47 O
ATOM 9 C3' A B 424 56.729 113.901 18.479 1.00 38.69 C
ATOM 10 O3' A B 424 55.558 114.543 18.969 1.00 40.32 O
ATOM 11 C2' A B 424 56.579 112.391 18.342 1.00 37.29 C
ATOM 12 O2' A B 424 55.291 112.015 17.904 1.00 37.00 O
ATOM 13 C1' A B 424 57.591 112.083 17.232 1.00 35.64 C
ATOM 14 N9 A B 424 58.913 111.623 17.657 1.00 35.33 N
ATOM 15 C8 A B 424 59.993 112.391 18.026 1.00 34.02 C
ATOM 16 N7 A B 424 61.077 111.697 18.267 1.00 33.28 N
ATOM 17 C5 A B 424 60.683 110.381 18.065 1.00 34.18 C
ATOM 18 C6 A B 424 61.380 109.158 18.148 1.00 34.69 C
ATOM 19 N6 A B 424 62.680 109.059 18.442 1.00 34.12 N
ATOM 20 N1 A B 424 60.688 108.025 17.907 1.00 35.06 N
ATOM 21 C2 A B 424 59.389 108.123 17.592 1.00 36.46 C
ATOM 22 N3 A B 424 58.628 109.210 17.469 1.00 35.50 N
ATOM 23 C4 A B 424 59.344 110.320 17.718 1.00 34.86 C
ATOM 24 P A B 425 55.439 114.922 20.528 1.00 44.32 P
ATOM 25 OP1 A B 425 54.266 115.819 20.656 1.00 44.26 O
ATOM 26 OP2 A B 425 56.756 115.353 21.061 1.00 42.18 O
ATOM 27 O5' A B 425 55.065 113.544 21.225 1.00 44.94 O
TER
ATOM 2 P A A 222 49.682 107.222 19.241 1.00 35.42 P
ATOM 3 OP1 A A 222 48.705 108.330 19.065 1.00 34.07 O
ATOM 4 OP2 A A 222 49.406 105.892 18.639 1.00 33.54 O
ATOM 5 O5' A A 222 51.110 107.694 18.723 1.00 34.26 O
ATOM 6 C5' A A 222 51.672 108.935 19.188 1.00 34.61 C
ATOM 7 C4' A A 222 53.150 108.964 18.935 1.00 33.33 C
ATOM 8 O4' A A 222 53.803 107.927 19.711 1.00 33.01 O
ATOM 9 C3' A A 222 53.555 108.657 17.510 1.00 34.77 C
ATOM 10 O3' A A 222 53.379 109.788 16.668 1.00 39.69 O
ATOM 11 C2' A A 222 55.002 108.213 17.683 1.00 33.78 C
ATOM 12 O2' A A 222 55.909 109.279 17.881 1.00 33.10 O
ATOM 13 C1' A A 222 54.902 107.406 18.978 1.00 32.53 C
ATOM 14 N9 A A 222 54.650 105.993 18.711 1.00 30.65 N
ATOM 15 C8 A A 222 53.438 105.359 18.588 1.00 31.87 C
ATOM 16 N7 A A 222 53.538 104.079 18.322 1.00 30.92 N
ATOM 17 C5 A A 222 54.905 103.854 18.272 1.00 29.22 C
ATOM 18 C6 A A 222 55.660 102.702 18.026 1.00 30.53 C
ATOM 19 N6 A A 222 55.121 101.509 17.770 1.00 32.55 N
ATOM 20 N1 A A 222 57.007 102.814 18.047 1.00 30.55 N
ATOM 21 C2 A A 222 57.543 104.013 18.293 1.00 30.67 C
ATOM 22 N3 A A 222 56.937 105.172 18.536 1.00 30.62 N
ATOM 23 C4 A A 222 55.603 105.022 18.513 1.00 30.13 C
ATOM 24 P C A 223 53.583 109.636 15.080 1.00 43.09 P
ATOM 25 OP1 C A 223 53.459 111.000 14.503 1.00 45.36 O
ATOM 26 OP2 C A 223 52.749 108.526 14.539 1.00 41.39 O
ATOM 27 O5' C A 223 55.103 109.197 14.970 1.00 41.98 O
TER
ATOM 1 O3' A B 423 60.680 116.876 16.525 1.00 38.43 O
ATOM 2 P A B 424 59.938 116.775 17.943 1.00 39.70 P
ATOM 3 OP1 A B 424 59.128 118.007 18.101 1.00 40.65 O
ATOM 4 OP2 A B 424 60.951 116.421 18.967 1.00 39.93 O
ATOM 5 O5' A B 424 58.948 115.542 17.777 1.00 40.21 O
ATOM 6 C5' A B 424 57.783 115.624 16.942 1.00 38.72 C
ATOM 7 C4' A B 424 57.000 114.343 17.049 1.00 38.95 C
ATOM 8 O4' A B 424 57.774 113.263 16.470 1.00 37.47 O
ATOM 9 C3' A B 424 56.729 113.901 18.479 1.00 38.69 C
ATOM 10 O3' A B 424 55.558 114.543 18.969 1.00 40.32 O
ATOM 11 C2' A B 424 56.579 112.391 18.342 1.00 37.29 C
ATOM 12 O2' A B 424 55.291 112.015 17.904 1.00 37.00 O
ATOM 13 C1' A B 424 57.591 112.083 17.232 1.00 35.64 C
ATOM 14 N9 A B 424 58.913 111.623 17.657 1.00 35.33 N
ATOM 15 C8 A B 424 59.993 112.391 18.026 1.00 34.02 C
ATOM 16 N7 A B 424 61.077 111.697 18.267 1.00 33.28 N
ATOM 17 C5 A B 424 60.683 110.381 18.065 1.00 34.18 C
ATOM 18 C6 A B 424 61.380 109.158 18.148 1.00 34.69 C
ATOM 19 N6 A B 424 62.680 109.059 18.442 1.00 34.12 N
ATOM 20 N1 A B 424 60.688 108.025 17.907 1.00 35.06 N
ATOM 21 C2 A B 424 59.389 108.123 17.592 1.00 36.46 C
ATOM 22 N3 A B 424 58.628 109.210 17.469 1.00 35.50 N
ATOM 23 C4 A B 424 59.344 110.320 17.718 1.00 34.86 C
ATOM 24 P A B 425 55.439 114.922 20.528 1.00 44.32 P
ATOM 25 OP1 A B 425 54.266 115.819 20.656 1.00 44.26 O
ATOM 26 OP2 A B 425 56.756 115.353 21.061 1.00 42.18 O
ATOM 27 O5' A B 425 55.065 113.544 21.225 1.00 44.94 O
TER
Atoms:
OP1: (48.705,108.330,19.065)
OP2: (49.406,105.892,18.639)
C3': (53.555,108.657,17.510)
C1': (54.902,107.406,18.978)
C5': (51.672,108.935,19.188)
O4': (53.803,107.927,19.711)
C8: (53.438,105.359,18.588)
O2': (55.909,109.279,17.881)
C6: (55.660,102.702,18.026)
C5: (54.905,103.854,18.272)
C4: (55.603,105.022,18.513)
P: (49.682,107.222,19.241)
C4': (53.150,108.964,18.935)
C2': (55.002,108.213,17.683)
C2: (57.543,104.013,18.293)
N1: (57.007,102.814,18.047)
N3: (56.937,105.172,18.536)
N6: (55.121,101.509,17.770)
N7: (53.538,104.079,18.322)
N9: (54.650,105.993,18.711)
O5': (51.110,107.694,18.723)
O3': (53.379,109.788,16.668)
OP2: (49.406,105.892,18.639)
C3': (53.555,108.657,17.510)
C1': (54.902,107.406,18.978)
C5': (51.672,108.935,19.188)
O4': (53.803,107.927,19.711)
C8: (53.438,105.359,18.588)
O2': (55.909,109.279,17.881)
C6: (55.660,102.702,18.026)
C5: (54.905,103.854,18.272)
C4: (55.603,105.022,18.513)
P: (49.682,107.222,19.241)
C4': (53.150,108.964,18.935)
C2': (55.002,108.213,17.683)
C2: (57.543,104.013,18.293)
N1: (57.007,102.814,18.047)
N3: (56.937,105.172,18.536)
N6: (55.121,101.509,17.770)
N7: (53.538,104.079,18.322)
N9: (54.650,105.993,18.711)
O5': (51.110,107.694,18.723)
O3': (53.379,109.788,16.668)
OP1: (59.128,118.007,18.101)
OP2: (60.951,116.421,18.967)
C3': (56.729,113.901,18.479)
C1': (57.591,112.083,17.232)
C5': (57.783,115.624,16.942)
O4': (57.774,113.263,16.470)
C8: (59.993,112.391,18.026)
O2': (55.291,112.015,17.904)
C6: (61.380,109.158,18.148)
C5: (60.683,110.381,18.065)
C4: (59.344,110.320,17.718)
P: (59.938,116.775,17.943)
C4': (57.000,114.343,17.049)
C2': (56.579,112.391,18.342)
C2: (59.389,108.123,17.592)
N1: (60.688,108.025,17.907)
N3: (58.628,109.210,17.469)
N6: (62.680,109.059,18.442)
N7: (61.077,111.697,18.267)
N9: (58.913,111.623,17.657)
O5': (58.948,115.542,17.777)
O3': (55.558,114.543,18.969)
OP2: (60.951,116.421,18.967)
C3': (56.729,113.901,18.479)
C1': (57.591,112.083,17.232)
C5': (57.783,115.624,16.942)
O4': (57.774,113.263,16.470)
C8: (59.993,112.391,18.026)
O2': (55.291,112.015,17.904)
C6: (61.380,109.158,18.148)
C5: (60.683,110.381,18.065)
C4: (59.344,110.320,17.718)
P: (59.938,116.775,17.943)
C4': (57.000,114.343,17.049)
C2': (56.579,112.391,18.342)
C2: (59.389,108.123,17.592)
N1: (60.688,108.025,17.907)
N3: (58.628,109.210,17.469)
N6: (62.680,109.059,18.442)
N7: (61.077,111.697,18.267)
N9: (58.913,111.623,17.657)
O5': (58.948,115.542,17.777)
O3': (55.558,114.543,18.969)
Image (generated by PyMOL):