Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 49.919 107.623 20.849 1.00 45.76 O
ATOM 2 P A A 222 49.736 107.776 19.262 1.00 47.52 P
ATOM 3 OP1 A A 222 48.777 108.899 19.095 1.00 44.16 O
ATOM 4 OP2 A A 222 49.437 106.445 18.660 1.00 43.94 O
ATOM 5 O5' A A 222 51.177 108.235 18.759 1.00 46.23 O
ATOM 6 C5' A A 222 51.714 109.512 19.153 1.00 45.48 C
ATOM 7 C4' A A 222 53.200 109.548 18.927 1.00 44.23 C
ATOM 8 O4' A A 222 53.828 108.505 19.714 1.00 45.00 O
ATOM 9 C3' A A 222 53.648 109.247 17.512 1.00 45.57 C
ATOM 10 O3' A A 222 53.522 110.393 16.683 1.00 49.92 O
ATOM 11 C2' A A 222 55.088 108.790 17.718 1.00 43.63 C
ATOM 12 O2' A A 222 56.003 109.847 17.919 1.00 42.45 O
ATOM 13 C1' A A 222 54.956 107.995 19.017 1.00 43.03 C
ATOM 14 N9 A A 222 54.737 106.575 18.769 1.00 39.91 N
ATOM 15 C8 A A 222 53.546 105.910 18.610 1.00 39.23 C
ATOM 16 N7 A A 222 53.688 104.628 18.377 1.00 38.41 N
ATOM 17 C5 A A 222 55.062 104.438 18.386 1.00 36.83 C
ATOM 18 C6 A A 222 55.852 103.304 18.209 1.00 36.98 C
ATOM 19 N6 A A 222 55.355 102.092 17.960 1.00 40.01 N
ATOM 20 N1 A A 222 57.193 103.451 18.294 1.00 38.08 N
ATOM 21 C2 A A 222 57.690 104.669 18.536 1.00 36.36 C
ATOM 22 N3 A A 222 57.047 105.814 18.717 1.00 36.75 N
ATOM 23 C4 A A 222 55.719 105.627 18.631 1.00 38.02 C
ATOM 24 P C A 223 53.733 110.254 15.097 1.00 53.22 P
ATOM 25 OP1 C A 223 53.603 111.626 14.536 1.00 53.29 O
ATOM 26 OP2 C A 223 52.874 109.158 14.573 1.00 52.46 O
ATOM 27 O5' C A 223 55.252 109.798 14.984 1.00 52.43 O
TER
ATOM 1 O3' A B 423 60.801 117.449 16.537 1.00 49.85 O
ATOM 2 P A B 424 60.028 117.341 17.934 1.00 50.57 P
ATOM 3 OP1 A B 424 59.216 118.570 18.092 1.00 51.81 O
ATOM 4 OP2 A B 424 61.024 116.978 18.973 1.00 52.74 O
ATOM 5 O5' A B 424 59.046 116.108 17.726 1.00 50.85 O
ATOM 6 C5' A B 424 57.861 116.222 16.926 1.00 48.60 C
ATOM 7 C4' A B 424 57.055 114.959 17.045 1.00 48.83 C
ATOM 8 O4' A B 424 57.803 113.868 16.456 1.00 47.10 O
ATOM 9 C3' A B 424 56.799 114.525 18.481 1.00 48.61 C
ATOM 10 O3' A B 424 55.640 115.181 18.983 1.00 50.39 O
ATOM 11 C2' A B 424 56.630 113.018 18.351 1.00 47.07 C
ATOM 12 O2' A B 424 55.332 112.671 17.916 1.00 46.10 O
ATOM 13 C1' A B 424 57.628 112.695 17.232 1.00 45.90 C
ATOM 14 N9 A B 424 58.955 112.246 17.646 1.00 45.21 N
ATOM 15 C8 A B 424 60.042 113.023 17.954 1.00 44.78 C
ATOM 16 N7 A B 424 61.128 112.335 18.207 1.00 44.98 N
ATOM 17 C5 A B 424 60.725 111.014 18.077 1.00 44.16 C
ATOM 18 C6 A B 424 61.417 109.794 18.207 1.00 43.71 C
ATOM 19 N6 A B 424 62.713 109.701 18.507 1.00 42.85 N
ATOM 20 N1 A B 424 60.721 108.656 18.014 1.00 44.23 N
ATOM 21 C2 A B 424 59.419 108.747 17.716 1.00 46.11 C
ATOM 22 N3 A B 424 58.660 109.832 17.565 1.00 45.17 N
ATOM 23 C4 A B 424 59.382 110.945 17.755 1.00 44.69 C
ATOM 24 P A B 425 55.552 115.575 20.537 1.00 53.58 P
ATOM 25 OP1 A B 425 54.407 116.504 20.695 1.00 52.31 O
ATOM 26 OP2 A B 425 56.895 115.973 21.026 1.00 53.97 O
ATOM 27 O5' A B 425 55.170 114.209 21.254 1.00 54.88 O
TER
ATOM 2 P A A 222 49.736 107.776 19.262 1.00 47.52 P
ATOM 3 OP1 A A 222 48.777 108.899 19.095 1.00 44.16 O
ATOM 4 OP2 A A 222 49.437 106.445 18.660 1.00 43.94 O
ATOM 5 O5' A A 222 51.177 108.235 18.759 1.00 46.23 O
ATOM 6 C5' A A 222 51.714 109.512 19.153 1.00 45.48 C
ATOM 7 C4' A A 222 53.200 109.548 18.927 1.00 44.23 C
ATOM 8 O4' A A 222 53.828 108.505 19.714 1.00 45.00 O
ATOM 9 C3' A A 222 53.648 109.247 17.512 1.00 45.57 C
ATOM 10 O3' A A 222 53.522 110.393 16.683 1.00 49.92 O
ATOM 11 C2' A A 222 55.088 108.790 17.718 1.00 43.63 C
ATOM 12 O2' A A 222 56.003 109.847 17.919 1.00 42.45 O
ATOM 13 C1' A A 222 54.956 107.995 19.017 1.00 43.03 C
ATOM 14 N9 A A 222 54.737 106.575 18.769 1.00 39.91 N
ATOM 15 C8 A A 222 53.546 105.910 18.610 1.00 39.23 C
ATOM 16 N7 A A 222 53.688 104.628 18.377 1.00 38.41 N
ATOM 17 C5 A A 222 55.062 104.438 18.386 1.00 36.83 C
ATOM 18 C6 A A 222 55.852 103.304 18.209 1.00 36.98 C
ATOM 19 N6 A A 222 55.355 102.092 17.960 1.00 40.01 N
ATOM 20 N1 A A 222 57.193 103.451 18.294 1.00 38.08 N
ATOM 21 C2 A A 222 57.690 104.669 18.536 1.00 36.36 C
ATOM 22 N3 A A 222 57.047 105.814 18.717 1.00 36.75 N
ATOM 23 C4 A A 222 55.719 105.627 18.631 1.00 38.02 C
ATOM 24 P C A 223 53.733 110.254 15.097 1.00 53.22 P
ATOM 25 OP1 C A 223 53.603 111.626 14.536 1.00 53.29 O
ATOM 26 OP2 C A 223 52.874 109.158 14.573 1.00 52.46 O
ATOM 27 O5' C A 223 55.252 109.798 14.984 1.00 52.43 O
TER
ATOM 1 O3' A B 423 60.801 117.449 16.537 1.00 49.85 O
ATOM 2 P A B 424 60.028 117.341 17.934 1.00 50.57 P
ATOM 3 OP1 A B 424 59.216 118.570 18.092 1.00 51.81 O
ATOM 4 OP2 A B 424 61.024 116.978 18.973 1.00 52.74 O
ATOM 5 O5' A B 424 59.046 116.108 17.726 1.00 50.85 O
ATOM 6 C5' A B 424 57.861 116.222 16.926 1.00 48.60 C
ATOM 7 C4' A B 424 57.055 114.959 17.045 1.00 48.83 C
ATOM 8 O4' A B 424 57.803 113.868 16.456 1.00 47.10 O
ATOM 9 C3' A B 424 56.799 114.525 18.481 1.00 48.61 C
ATOM 10 O3' A B 424 55.640 115.181 18.983 1.00 50.39 O
ATOM 11 C2' A B 424 56.630 113.018 18.351 1.00 47.07 C
ATOM 12 O2' A B 424 55.332 112.671 17.916 1.00 46.10 O
ATOM 13 C1' A B 424 57.628 112.695 17.232 1.00 45.90 C
ATOM 14 N9 A B 424 58.955 112.246 17.646 1.00 45.21 N
ATOM 15 C8 A B 424 60.042 113.023 17.954 1.00 44.78 C
ATOM 16 N7 A B 424 61.128 112.335 18.207 1.00 44.98 N
ATOM 17 C5 A B 424 60.725 111.014 18.077 1.00 44.16 C
ATOM 18 C6 A B 424 61.417 109.794 18.207 1.00 43.71 C
ATOM 19 N6 A B 424 62.713 109.701 18.507 1.00 42.85 N
ATOM 20 N1 A B 424 60.721 108.656 18.014 1.00 44.23 N
ATOM 21 C2 A B 424 59.419 108.747 17.716 1.00 46.11 C
ATOM 22 N3 A B 424 58.660 109.832 17.565 1.00 45.17 N
ATOM 23 C4 A B 424 59.382 110.945 17.755 1.00 44.69 C
ATOM 24 P A B 425 55.552 115.575 20.537 1.00 53.58 P
ATOM 25 OP1 A B 425 54.407 116.504 20.695 1.00 52.31 O
ATOM 26 OP2 A B 425 56.895 115.973 21.026 1.00 53.97 O
ATOM 27 O5' A B 425 55.170 114.209 21.254 1.00 54.88 O
TER
Atoms:
OP1: (48.777,108.899,19.095)
OP2: (49.437,106.445,18.660)
C3': (53.648,109.247,17.512)
C1': (54.956,107.995,19.017)
C5': (51.714,109.512,19.153)
O4': (53.828,108.505,19.714)
C8: (53.546,105.910,18.610)
O2': (56.003,109.847,17.919)
C6: (55.852,103.304,18.209)
C5: (55.062,104.438,18.386)
C4: (55.719,105.627,18.631)
P: (49.736,107.776,19.262)
C4': (53.200,109.548,18.927)
C2': (55.088,108.790,17.718)
C2: (57.690,104.669,18.536)
N1: (57.193,103.451,18.294)
N3: (57.047,105.814,18.717)
N6: (55.355,102.092,17.960)
N7: (53.688,104.628,18.377)
N9: (54.737,106.575,18.769)
O5': (51.177,108.235,18.759)
O3': (53.522,110.393,16.683)
OP2: (49.437,106.445,18.660)
C3': (53.648,109.247,17.512)
C1': (54.956,107.995,19.017)
C5': (51.714,109.512,19.153)
O4': (53.828,108.505,19.714)
C8: (53.546,105.910,18.610)
O2': (56.003,109.847,17.919)
C6: (55.852,103.304,18.209)
C5: (55.062,104.438,18.386)
C4: (55.719,105.627,18.631)
P: (49.736,107.776,19.262)
C4': (53.200,109.548,18.927)
C2': (55.088,108.790,17.718)
C2: (57.690,104.669,18.536)
N1: (57.193,103.451,18.294)
N3: (57.047,105.814,18.717)
N6: (55.355,102.092,17.960)
N7: (53.688,104.628,18.377)
N9: (54.737,106.575,18.769)
O5': (51.177,108.235,18.759)
O3': (53.522,110.393,16.683)
OP1: (59.216,118.570,18.092)
OP2: (61.024,116.978,18.973)
C3': (56.799,114.525,18.481)
C1': (57.628,112.695,17.232)
C5': (57.861,116.222,16.926)
O4': (57.803,113.868,16.456)
C8: (60.042,113.023,17.954)
O2': (55.332,112.671,17.916)
C6: (61.417,109.794,18.207)
C5: (60.725,111.014,18.077)
C4: (59.382,110.945,17.755)
P: (60.028,117.341,17.934)
C4': (57.055,114.959,17.045)
C2': (56.630,113.018,18.351)
C2: (59.419,108.747,17.716)
N1: (60.721,108.656,18.014)
N3: (58.660,109.832,17.565)
N6: (62.713,109.701,18.507)
N7: (61.128,112.335,18.207)
N9: (58.955,112.246,17.646)
O5': (59.046,116.108,17.726)
O3': (55.640,115.181,18.983)
OP2: (61.024,116.978,18.973)
C3': (56.799,114.525,18.481)
C1': (57.628,112.695,17.232)
C5': (57.861,116.222,16.926)
O4': (57.803,113.868,16.456)
C8: (60.042,113.023,17.954)
O2': (55.332,112.671,17.916)
C6: (61.417,109.794,18.207)
C5: (60.725,111.014,18.077)
C4: (59.382,110.945,17.755)
P: (60.028,117.341,17.934)
C4': (57.055,114.959,17.045)
C2': (56.630,113.018,18.351)
C2: (59.419,108.747,17.716)
N1: (60.721,108.656,18.014)
N3: (58.660,109.832,17.565)
N6: (62.713,109.701,18.507)
N7: (61.128,112.335,18.207)
N9: (58.955,112.246,17.646)
O5': (59.046,116.108,17.726)
O3': (55.640,115.181,18.983)
Image (generated by PyMOL):