Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 49.868 107.783 20.865 1.00 39.32 O
ATOM 2 P A A 222 49.692 107.929 19.273 1.00 41.26 P
ATOM 3 OP1 A A 222 48.733 109.051 19.088 1.00 38.33 O
ATOM 4 OP2 A A 222 49.403 106.603 18.666 1.00 38.32 O
ATOM 5 O5' A A 222 51.132 108.400 18.779 1.00 40.92 O
ATOM 6 C5' A A 222 51.679 109.656 19.235 1.00 40.70 C
ATOM 7 C4' A A 222 53.165 109.684 19.025 1.00 39.68 C
ATOM 8 O4' A A 222 53.784 108.633 19.808 1.00 40.20 O
ATOM 9 C3' A A 222 53.606 109.382 17.608 1.00 41.42 C
ATOM 10 O3' A A 222 53.480 110.521 16.771 1.00 45.07 O
ATOM 11 C2' A A 222 55.041 108.911 17.808 1.00 39.56 C
ATOM 12 O2' A A 222 55.974 109.956 18.000 1.00 39.89 O
ATOM 13 C1' A A 222 54.904 108.113 19.106 1.00 39.42 C
ATOM 14 N9 A A 222 54.670 106.698 18.839 1.00 36.31 N
ATOM 15 C8 A A 222 53.471 106.047 18.684 1.00 35.70 C
ATOM 16 N7 A A 222 53.599 104.768 18.426 1.00 36.09 N
ATOM 17 C5 A A 222 54.972 104.565 18.418 1.00 33.14 C
ATOM 18 C6 A A 222 55.750 103.425 18.210 1.00 33.78 C
ATOM 19 N6 A A 222 55.234 102.223 17.949 1.00 36.36 N
ATOM 20 N1 A A 222 57.095 103.557 18.278 1.00 34.38 N
ATOM 21 C2 A A 222 57.605 104.766 18.529 1.00 32.61 C
ATOM 22 N3 A A 222 56.974 105.914 18.738 1.00 33.70 N
ATOM 23 C4 A A 222 55.643 105.742 18.672 1.00 34.10 C
ATOM 24 P C A 223 53.696 110.367 15.188 1.00 47.54 P
ATOM 25 OP1 C A 223 53.668 111.744 14.627 1.00 47.81 O
ATOM 26 OP2 C A 223 52.760 109.337 14.662 1.00 45.60 O
ATOM 27 O5' C A 223 55.185 109.808 15.111 1.00 45.81 O
TER
ATOM 1 O3' A B 423 60.706 117.616 16.538 1.00 43.72 O
ATOM 2 P A B 424 59.953 117.510 17.943 1.00 44.26 P
ATOM 3 OP1 A B 424 59.144 118.742 18.108 1.00 46.08 O
ATOM 4 OP2 A B 424 60.960 117.149 18.975 1.00 46.97 O
ATOM 5 O5' A B 424 58.975 116.273 17.742 1.00 45.10 O
ATOM 6 C5' A B 424 57.781 116.385 16.955 1.00 42.74 C
ATOM 7 C4' A B 424 56.984 115.117 17.073 1.00 43.52 C
ATOM 8 O4' A B 424 57.736 114.032 16.477 1.00 42.01 O
ATOM 9 C3' A B 424 56.737 114.672 18.507 1.00 43.30 C
ATOM 10 O3' A B 424 55.588 115.321 19.033 1.00 44.80 O
ATOM 11 C2' A B 424 56.564 113.167 18.365 1.00 42.64 C
ATOM 12 O2' A B 424 55.263 112.814 17.938 1.00 41.88 O
ATOM 13 C1' A B 424 57.563 112.855 17.245 1.00 41.63 C
ATOM 14 N9 A B 424 58.889 112.421 17.676 1.00 41.82 N
ATOM 15 C8 A B 424 59.968 113.203 18.004 1.00 40.98 C
ATOM 16 N7 A B 424 61.054 112.519 18.268 1.00 42.02 N
ATOM 17 C5 A B 424 60.658 111.196 18.123 1.00 41.35 C
ATOM 18 C6 A B 424 61.352 109.978 18.253 1.00 41.21 C
ATOM 19 N6 A B 424 62.644 109.887 18.566 1.00 41.66 N
ATOM 20 N1 A B 424 60.661 108.838 18.047 1.00 42.06 N
ATOM 21 C2 A B 424 59.361 108.926 17.737 1.00 42.99 C
ATOM 22 N3 A B 424 58.601 110.007 17.583 1.00 41.21 N
ATOM 23 C4 A B 424 59.320 111.122 17.786 1.00 41.56 C
ATOM 24 P A B 425 55.515 115.667 20.598 1.00 48.75 P
ATOM 25 OP1 A B 425 54.378 116.596 20.805 1.00 47.18 O
ATOM 26 OP2 A B 425 56.870 116.044 21.079 1.00 49.23 O
ATOM 27 O5' A B 425 55.129 114.278 21.267 1.00 49.02 O
TER
ATOM 2 P A A 222 49.692 107.929 19.273 1.00 41.26 P
ATOM 3 OP1 A A 222 48.733 109.051 19.088 1.00 38.33 O
ATOM 4 OP2 A A 222 49.403 106.603 18.666 1.00 38.32 O
ATOM 5 O5' A A 222 51.132 108.400 18.779 1.00 40.92 O
ATOM 6 C5' A A 222 51.679 109.656 19.235 1.00 40.70 C
ATOM 7 C4' A A 222 53.165 109.684 19.025 1.00 39.68 C
ATOM 8 O4' A A 222 53.784 108.633 19.808 1.00 40.20 O
ATOM 9 C3' A A 222 53.606 109.382 17.608 1.00 41.42 C
ATOM 10 O3' A A 222 53.480 110.521 16.771 1.00 45.07 O
ATOM 11 C2' A A 222 55.041 108.911 17.808 1.00 39.56 C
ATOM 12 O2' A A 222 55.974 109.956 18.000 1.00 39.89 O
ATOM 13 C1' A A 222 54.904 108.113 19.106 1.00 39.42 C
ATOM 14 N9 A A 222 54.670 106.698 18.839 1.00 36.31 N
ATOM 15 C8 A A 222 53.471 106.047 18.684 1.00 35.70 C
ATOM 16 N7 A A 222 53.599 104.768 18.426 1.00 36.09 N
ATOM 17 C5 A A 222 54.972 104.565 18.418 1.00 33.14 C
ATOM 18 C6 A A 222 55.750 103.425 18.210 1.00 33.78 C
ATOM 19 N6 A A 222 55.234 102.223 17.949 1.00 36.36 N
ATOM 20 N1 A A 222 57.095 103.557 18.278 1.00 34.38 N
ATOM 21 C2 A A 222 57.605 104.766 18.529 1.00 32.61 C
ATOM 22 N3 A A 222 56.974 105.914 18.738 1.00 33.70 N
ATOM 23 C4 A A 222 55.643 105.742 18.672 1.00 34.10 C
ATOM 24 P C A 223 53.696 110.367 15.188 1.00 47.54 P
ATOM 25 OP1 C A 223 53.668 111.744 14.627 1.00 47.81 O
ATOM 26 OP2 C A 223 52.760 109.337 14.662 1.00 45.60 O
ATOM 27 O5' C A 223 55.185 109.808 15.111 1.00 45.81 O
TER
ATOM 1 O3' A B 423 60.706 117.616 16.538 1.00 43.72 O
ATOM 2 P A B 424 59.953 117.510 17.943 1.00 44.26 P
ATOM 3 OP1 A B 424 59.144 118.742 18.108 1.00 46.08 O
ATOM 4 OP2 A B 424 60.960 117.149 18.975 1.00 46.97 O
ATOM 5 O5' A B 424 58.975 116.273 17.742 1.00 45.10 O
ATOM 6 C5' A B 424 57.781 116.385 16.955 1.00 42.74 C
ATOM 7 C4' A B 424 56.984 115.117 17.073 1.00 43.52 C
ATOM 8 O4' A B 424 57.736 114.032 16.477 1.00 42.01 O
ATOM 9 C3' A B 424 56.737 114.672 18.507 1.00 43.30 C
ATOM 10 O3' A B 424 55.588 115.321 19.033 1.00 44.80 O
ATOM 11 C2' A B 424 56.564 113.167 18.365 1.00 42.64 C
ATOM 12 O2' A B 424 55.263 112.814 17.938 1.00 41.88 O
ATOM 13 C1' A B 424 57.563 112.855 17.245 1.00 41.63 C
ATOM 14 N9 A B 424 58.889 112.421 17.676 1.00 41.82 N
ATOM 15 C8 A B 424 59.968 113.203 18.004 1.00 40.98 C
ATOM 16 N7 A B 424 61.054 112.519 18.268 1.00 42.02 N
ATOM 17 C5 A B 424 60.658 111.196 18.123 1.00 41.35 C
ATOM 18 C6 A B 424 61.352 109.978 18.253 1.00 41.21 C
ATOM 19 N6 A B 424 62.644 109.887 18.566 1.00 41.66 N
ATOM 20 N1 A B 424 60.661 108.838 18.047 1.00 42.06 N
ATOM 21 C2 A B 424 59.361 108.926 17.737 1.00 42.99 C
ATOM 22 N3 A B 424 58.601 110.007 17.583 1.00 41.21 N
ATOM 23 C4 A B 424 59.320 111.122 17.786 1.00 41.56 C
ATOM 24 P A B 425 55.515 115.667 20.598 1.00 48.75 P
ATOM 25 OP1 A B 425 54.378 116.596 20.805 1.00 47.18 O
ATOM 26 OP2 A B 425 56.870 116.044 21.079 1.00 49.23 O
ATOM 27 O5' A B 425 55.129 114.278 21.267 1.00 49.02 O
TER
Atoms:
OP1: (48.733,109.051,19.088)
OP2: (49.403,106.603,18.666)
C3': (53.606,109.382,17.608)
C1': (54.904,108.113,19.106)
C5': (51.679,109.656,19.235)
O4': (53.784,108.633,19.808)
C8: (53.471,106.047,18.684)
O2': (55.974,109.956,18.000)
C6: (55.750,103.425,18.210)
C5: (54.972,104.565,18.418)
C4: (55.643,105.742,18.672)
P: (49.692,107.929,19.273)
C4': (53.165,109.684,19.025)
C2': (55.041,108.911,17.808)
C2: (57.605,104.766,18.529)
N1: (57.095,103.557,18.278)
N3: (56.974,105.914,18.738)
N6: (55.234,102.223,17.949)
N7: (53.599,104.768,18.426)
N9: (54.670,106.698,18.839)
O5': (51.132,108.400,18.779)
O3': (53.480,110.521,16.771)
OP2: (49.403,106.603,18.666)
C3': (53.606,109.382,17.608)
C1': (54.904,108.113,19.106)
C5': (51.679,109.656,19.235)
O4': (53.784,108.633,19.808)
C8: (53.471,106.047,18.684)
O2': (55.974,109.956,18.000)
C6: (55.750,103.425,18.210)
C5: (54.972,104.565,18.418)
C4: (55.643,105.742,18.672)
P: (49.692,107.929,19.273)
C4': (53.165,109.684,19.025)
C2': (55.041,108.911,17.808)
C2: (57.605,104.766,18.529)
N1: (57.095,103.557,18.278)
N3: (56.974,105.914,18.738)
N6: (55.234,102.223,17.949)
N7: (53.599,104.768,18.426)
N9: (54.670,106.698,18.839)
O5': (51.132,108.400,18.779)
O3': (53.480,110.521,16.771)
OP1: (59.144,118.742,18.108)
OP2: (60.960,117.149,18.975)
C3': (56.737,114.672,18.507)
C1': (57.563,112.855,17.245)
C5': (57.781,116.385,16.955)
O4': (57.736,114.032,16.477)
C8: (59.968,113.203,18.004)
O2': (55.263,112.814,17.938)
C6: (61.352,109.978,18.253)
C5: (60.658,111.196,18.123)
C4: (59.320,111.122,17.786)
P: (59.953,117.510,17.943)
C4': (56.984,115.117,17.073)
C2': (56.564,113.167,18.365)
C2: (59.361,108.926,17.737)
N1: (60.661,108.838,18.047)
N3: (58.601,110.007,17.583)
N6: (62.644,109.887,18.566)
N7: (61.054,112.519,18.268)
N9: (58.889,112.421,17.676)
O5': (58.975,116.273,17.742)
O3': (55.588,115.321,19.033)
OP2: (60.960,117.149,18.975)
C3': (56.737,114.672,18.507)
C1': (57.563,112.855,17.245)
C5': (57.781,116.385,16.955)
O4': (57.736,114.032,16.477)
C8: (59.968,113.203,18.004)
O2': (55.263,112.814,17.938)
C6: (61.352,109.978,18.253)
C5: (60.658,111.196,18.123)
C4: (59.320,111.122,17.786)
P: (59.953,117.510,17.943)
C4': (56.984,115.117,17.073)
C2': (56.564,113.167,18.365)
C2: (59.361,108.926,17.737)
N1: (60.661,108.838,18.047)
N3: (58.601,110.007,17.583)
N6: (62.644,109.887,18.566)
N7: (61.054,112.519,18.268)
N9: (58.889,112.421,17.676)
O5': (58.975,116.273,17.742)
O3': (55.588,115.321,19.033)
Image (generated by PyMOL):