Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 49.920 107.615 20.899 1.00 38.61 O
ATOM 2 P A A 222 49.794 107.739 19.311 1.00 38.48 P
ATOM 3 OP1 A A 222 48.794 108.814 19.081 1.00 36.31 O
ATOM 4 OP2 A A 222 49.571 106.385 18.747 1.00 37.00 O
ATOM 5 O5' A A 222 51.241 108.223 18.849 1.00 38.22 O
ATOM 6 C5' A A 222 51.765 109.501 19.270 1.00 38.69 C
ATOM 7 C4' A A 222 53.251 109.557 19.032 1.00 38.40 C
ATOM 8 O4' A A 222 53.892 108.517 19.812 1.00 39.00 O
ATOM 9 C3' A A 222 53.681 109.258 17.610 1.00 40.15 C
ATOM 10 O3' A A 222 53.571 110.396 16.772 1.00 43.33 O
ATOM 11 C2' A A 222 55.113 108.773 17.787 1.00 38.39 C
ATOM 12 O2' A A 222 56.068 109.802 17.936 1.00 39.39 O
ATOM 13 C1' A A 222 54.992 107.988 19.091 1.00 37.65 C
ATOM 14 N9 A A 222 54.731 106.578 18.837 1.00 34.72 N
ATOM 15 C8 A A 222 53.519 105.962 18.664 1.00 34.38 C
ATOM 16 N7 A A 222 53.612 104.678 18.422 1.00 35.36 N
ATOM 17 C5 A A 222 54.978 104.433 18.446 1.00 33.08 C
ATOM 18 C6 A A 222 55.724 103.268 18.266 1.00 32.84 C
ATOM 19 N6 A A 222 55.176 102.080 17.999 1.00 34.50 N
ATOM 20 N1 A A 222 57.070 103.361 18.366 1.00 32.67 N
ATOM 21 C2 A A 222 57.610 104.556 18.622 1.00 31.52 C
ATOM 22 N3 A A 222 57.012 105.724 18.806 1.00 30.98 N
ATOM 23 C4 A A 222 55.679 105.592 18.706 1.00 33.19 C
ATOM 24 P C A 223 53.771 110.231 15.189 1.00 47.05 P
ATOM 25 OP1 C A 223 53.582 111.585 14.609 1.00 46.08 O
ATOM 26 OP2 C A 223 52.941 109.099 14.701 1.00 46.35 O
ATOM 27 O5' C A 223 55.302 109.807 15.069 1.00 46.47 O
TER
ATOM 1 O3' A B 423 60.826 117.433 16.570 1.00 46.19 O
ATOM 2 P A B 424 59.957 117.329 17.912 1.00 46.84 P
ATOM 3 OP1 A B 424 59.083 118.528 17.964 1.00 48.20 O
ATOM 4 OP2 A B 424 60.881 117.047 19.037 1.00 47.61 O
ATOM 5 O5' A B 424 59.037 116.052 17.669 1.00 46.65 O
ATOM 6 C5' A B 424 57.815 116.146 16.919 1.00 44.21 C
ATOM 7 C4' A B 424 57.002 114.893 17.113 1.00 44.50 C
ATOM 8 O4' A B 424 57.713 113.772 16.534 1.00 44.19 O
ATOM 9 C3' A B 424 56.790 114.515 18.568 1.00 44.16 C
ATOM 10 O3' A B 424 55.652 115.196 19.083 1.00 45.94 O
ATOM 11 C2' A B 424 56.616 113.002 18.504 1.00 42.94 C
ATOM 12 O2' A B 424 55.304 112.631 18.130 1.00 40.41 O
ATOM 13 C1' A B 424 57.577 112.636 17.367 1.00 42.21 C
ATOM 14 N9 A B 424 58.924 112.218 17.751 1.00 40.82 N
ATOM 15 C8 A B 424 59.999 113.016 18.050 1.00 40.78 C
ATOM 16 N7 A B 424 61.107 112.351 18.270 1.00 41.48 N
ATOM 17 C5 A B 424 60.732 111.023 18.123 1.00 41.12 C
ATOM 18 C6 A B 424 61.454 109.815 18.219 1.00 41.31 C
ATOM 19 N6 A B 424 62.761 109.746 18.482 1.00 41.51 N
ATOM 20 N1 A B 424 60.777 108.664 18.027 1.00 40.58 N
ATOM 21 C2 A B 424 59.466 108.730 17.759 1.00 41.42 C
ATOM 22 N3 A B 424 58.680 109.799 17.638 1.00 40.54 N
ATOM 23 C4 A B 424 59.383 110.927 17.829 1.00 41.19 C
ATOM 24 P A B 425 55.555 115.509 20.652 1.00 48.90 P
ATOM 25 OP1 A B 425 54.380 116.388 20.865 1.00 48.12 O
ATOM 26 OP2 A B 425 56.889 115.934 21.144 1.00 49.56 O
ATOM 27 O5' A B 425 55.235 114.088 21.294 1.00 49.95 O
TER
ATOM 2 P A A 222 49.794 107.739 19.311 1.00 38.48 P
ATOM 3 OP1 A A 222 48.794 108.814 19.081 1.00 36.31 O
ATOM 4 OP2 A A 222 49.571 106.385 18.747 1.00 37.00 O
ATOM 5 O5' A A 222 51.241 108.223 18.849 1.00 38.22 O
ATOM 6 C5' A A 222 51.765 109.501 19.270 1.00 38.69 C
ATOM 7 C4' A A 222 53.251 109.557 19.032 1.00 38.40 C
ATOM 8 O4' A A 222 53.892 108.517 19.812 1.00 39.00 O
ATOM 9 C3' A A 222 53.681 109.258 17.610 1.00 40.15 C
ATOM 10 O3' A A 222 53.571 110.396 16.772 1.00 43.33 O
ATOM 11 C2' A A 222 55.113 108.773 17.787 1.00 38.39 C
ATOM 12 O2' A A 222 56.068 109.802 17.936 1.00 39.39 O
ATOM 13 C1' A A 222 54.992 107.988 19.091 1.00 37.65 C
ATOM 14 N9 A A 222 54.731 106.578 18.837 1.00 34.72 N
ATOM 15 C8 A A 222 53.519 105.962 18.664 1.00 34.38 C
ATOM 16 N7 A A 222 53.612 104.678 18.422 1.00 35.36 N
ATOM 17 C5 A A 222 54.978 104.433 18.446 1.00 33.08 C
ATOM 18 C6 A A 222 55.724 103.268 18.266 1.00 32.84 C
ATOM 19 N6 A A 222 55.176 102.080 17.999 1.00 34.50 N
ATOM 20 N1 A A 222 57.070 103.361 18.366 1.00 32.67 N
ATOM 21 C2 A A 222 57.610 104.556 18.622 1.00 31.52 C
ATOM 22 N3 A A 222 57.012 105.724 18.806 1.00 30.98 N
ATOM 23 C4 A A 222 55.679 105.592 18.706 1.00 33.19 C
ATOM 24 P C A 223 53.771 110.231 15.189 1.00 47.05 P
ATOM 25 OP1 C A 223 53.582 111.585 14.609 1.00 46.08 O
ATOM 26 OP2 C A 223 52.941 109.099 14.701 1.00 46.35 O
ATOM 27 O5' C A 223 55.302 109.807 15.069 1.00 46.47 O
TER
ATOM 1 O3' A B 423 60.826 117.433 16.570 1.00 46.19 O
ATOM 2 P A B 424 59.957 117.329 17.912 1.00 46.84 P
ATOM 3 OP1 A B 424 59.083 118.528 17.964 1.00 48.20 O
ATOM 4 OP2 A B 424 60.881 117.047 19.037 1.00 47.61 O
ATOM 5 O5' A B 424 59.037 116.052 17.669 1.00 46.65 O
ATOM 6 C5' A B 424 57.815 116.146 16.919 1.00 44.21 C
ATOM 7 C4' A B 424 57.002 114.893 17.113 1.00 44.50 C
ATOM 8 O4' A B 424 57.713 113.772 16.534 1.00 44.19 O
ATOM 9 C3' A B 424 56.790 114.515 18.568 1.00 44.16 C
ATOM 10 O3' A B 424 55.652 115.196 19.083 1.00 45.94 O
ATOM 11 C2' A B 424 56.616 113.002 18.504 1.00 42.94 C
ATOM 12 O2' A B 424 55.304 112.631 18.130 1.00 40.41 O
ATOM 13 C1' A B 424 57.577 112.636 17.367 1.00 42.21 C
ATOM 14 N9 A B 424 58.924 112.218 17.751 1.00 40.82 N
ATOM 15 C8 A B 424 59.999 113.016 18.050 1.00 40.78 C
ATOM 16 N7 A B 424 61.107 112.351 18.270 1.00 41.48 N
ATOM 17 C5 A B 424 60.732 111.023 18.123 1.00 41.12 C
ATOM 18 C6 A B 424 61.454 109.815 18.219 1.00 41.31 C
ATOM 19 N6 A B 424 62.761 109.746 18.482 1.00 41.51 N
ATOM 20 N1 A B 424 60.777 108.664 18.027 1.00 40.58 N
ATOM 21 C2 A B 424 59.466 108.730 17.759 1.00 41.42 C
ATOM 22 N3 A B 424 58.680 109.799 17.638 1.00 40.54 N
ATOM 23 C4 A B 424 59.383 110.927 17.829 1.00 41.19 C
ATOM 24 P A B 425 55.555 115.509 20.652 1.00 48.90 P
ATOM 25 OP1 A B 425 54.380 116.388 20.865 1.00 48.12 O
ATOM 26 OP2 A B 425 56.889 115.934 21.144 1.00 49.56 O
ATOM 27 O5' A B 425 55.235 114.088 21.294 1.00 49.95 O
TER
Atoms:
OP1: (48.794,108.814,19.081)
OP2: (49.571,106.385,18.747)
C3': (53.681,109.258,17.610)
C1': (54.992,107.988,19.091)
C5': (51.765,109.501,19.270)
O4': (53.892,108.517,19.812)
C8: (53.519,105.962,18.664)
O2': (56.068,109.802,17.936)
C6: (55.724,103.268,18.266)
C5: (54.978,104.433,18.446)
C4: (55.679,105.592,18.706)
P: (49.794,107.739,19.311)
C4': (53.251,109.557,19.032)
C2': (55.113,108.773,17.787)
C2: (57.610,104.556,18.622)
N1: (57.070,103.361,18.366)
N3: (57.012,105.724,18.806)
N6: (55.176,102.080,17.999)
N7: (53.612,104.678,18.422)
N9: (54.731,106.578,18.837)
O5': (51.241,108.223,18.849)
O3': (53.571,110.396,16.772)
OP2: (49.571,106.385,18.747)
C3': (53.681,109.258,17.610)
C1': (54.992,107.988,19.091)
C5': (51.765,109.501,19.270)
O4': (53.892,108.517,19.812)
C8: (53.519,105.962,18.664)
O2': (56.068,109.802,17.936)
C6: (55.724,103.268,18.266)
C5: (54.978,104.433,18.446)
C4: (55.679,105.592,18.706)
P: (49.794,107.739,19.311)
C4': (53.251,109.557,19.032)
C2': (55.113,108.773,17.787)
C2: (57.610,104.556,18.622)
N1: (57.070,103.361,18.366)
N3: (57.012,105.724,18.806)
N6: (55.176,102.080,17.999)
N7: (53.612,104.678,18.422)
N9: (54.731,106.578,18.837)
O5': (51.241,108.223,18.849)
O3': (53.571,110.396,16.772)
OP1: (59.083,118.528,17.964)
OP2: (60.881,117.047,19.037)
C3': (56.790,114.515,18.568)
C1': (57.577,112.636,17.367)
C5': (57.815,116.146,16.919)
O4': (57.713,113.772,16.534)
C8: (59.999,113.016,18.050)
O2': (55.304,112.631,18.130)
C6: (61.454,109.815,18.219)
C5: (60.732,111.023,18.123)
C4: (59.383,110.927,17.829)
P: (59.957,117.329,17.912)
C4': (57.002,114.893,17.113)
C2': (56.616,113.002,18.504)
C2: (59.466,108.730,17.759)
N1: (60.777,108.664,18.027)
N3: (58.680,109.799,17.638)
N6: (62.761,109.746,18.482)
N7: (61.107,112.351,18.270)
N9: (58.924,112.218,17.751)
O5': (59.037,116.052,17.669)
O3': (55.652,115.196,19.083)
OP2: (60.881,117.047,19.037)
C3': (56.790,114.515,18.568)
C1': (57.577,112.636,17.367)
C5': (57.815,116.146,16.919)
O4': (57.713,113.772,16.534)
C8: (59.999,113.016,18.050)
O2': (55.304,112.631,18.130)
C6: (61.454,109.815,18.219)
C5: (60.732,111.023,18.123)
C4: (59.383,110.927,17.829)
P: (59.957,117.329,17.912)
C4': (57.002,114.893,17.113)
C2': (56.616,113.002,18.504)
C2: (59.466,108.730,17.759)
N1: (60.777,108.664,18.027)
N3: (58.680,109.799,17.638)
N6: (62.761,109.746,18.482)
N7: (61.107,112.351,18.270)
N9: (58.924,112.218,17.751)
O5': (59.037,116.052,17.669)
O3': (55.652,115.196,19.083)
Image (generated by PyMOL):