Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 50.102 107.856 21.020 1.00 53.52 O
ATOM 2 P A A 222 49.974 108.037 19.434 1.00 55.19 P
ATOM 3 OP1 A A 222 49.016 109.161 19.219 1.00 52.19 O
ATOM 4 OP2 A A 222 49.722 106.713 18.797 1.00 54.31 O
ATOM 5 O5' A A 222 51.433 108.494 18.998 1.00 55.70 O
ATOM 6 C5' A A 222 51.969 109.755 19.432 1.00 54.73 C
ATOM 7 C4' A A 222 53.451 109.781 19.204 1.00 53.43 C
ATOM 8 O4' A A 222 54.049 108.699 19.964 1.00 52.90 O
ATOM 9 C3' A A 222 53.890 109.488 17.781 1.00 54.07 C
ATOM 10 O3' A A 222 53.778 110.622 16.928 1.00 56.42 O
ATOM 11 C2' A A 222 55.325 109.017 17.982 1.00 52.38 C
ATOM 12 O2' A A 222 56.256 110.061 18.175 1.00 50.96 O
ATOM 13 C1' A A 222 55.187 108.214 19.273 1.00 51.86 C
ATOM 14 N9 A A 222 55.014 106.789 19.014 1.00 49.57 N
ATOM 15 C8 A A 222 53.868 106.054 18.843 1.00 48.94 C
ATOM 16 N7 A A 222 54.092 104.777 18.627 1.00 49.93 N
ATOM 17 C5 A A 222 55.480 104.671 18.660 1.00 48.81 C
ATOM 18 C6 A A 222 56.361 103.579 18.513 1.00 49.80 C
ATOM 19 N6 A A 222 55.969 102.321 18.291 1.00 52.33 N
ATOM 20 N1 A A 222 57.685 103.827 18.603 1.00 48.30 N
ATOM 21 C2 A A 222 58.086 105.080 18.822 1.00 46.08 C
ATOM 22 N3 A A 222 57.365 106.177 18.980 1.00 45.78 N
ATOM 23 C4 A A 222 56.055 105.902 18.889 1.00 48.18 C
ATOM 24 P C A 223 54.101 110.475 15.357 1.00 59.64 P
ATOM 25 OP1 C A 223 54.129 111.854 14.805 1.00 59.71 O
ATOM 26 OP2 C A 223 53.192 109.464 14.761 1.00 60.09 O
ATOM 27 O5' C A 223 55.587 109.892 15.337 1.00 59.76 O
TER
ATOM 1 O3' A B 423 61.076 117.735 16.870 1.00 61.35 O
ATOM 2 P A B 424 60.209 117.568 18.209 1.00 63.56 P
ATOM 3 OP1 A B 424 59.325 118.764 18.315 1.00 63.98 O
ATOM 4 OP2 A B 424 61.137 117.235 19.326 1.00 64.70 O
ATOM 5 O5' A B 424 59.305 116.292 17.905 1.00 62.57 O
ATOM 6 C5' A B 424 58.105 116.403 17.121 1.00 60.38 C
ATOM 7 C4' A B 424 57.269 115.162 17.292 1.00 59.28 C
ATOM 8 O4' A B 424 57.957 114.040 16.688 1.00 57.45 O
ATOM 9 C3' A B 424 57.047 114.755 18.740 1.00 58.15 C
ATOM 10 O3' A B 424 55.926 115.451 19.284 1.00 59.44 O
ATOM 11 C2' A B 424 56.828 113.254 18.628 1.00 56.02 C
ATOM 12 O2' A B 424 55.522 112.948 18.194 1.00 55.40 O
ATOM 13 C1' A B 424 57.797 112.894 17.500 1.00 54.78 C
ATOM 14 N9 A B 424 59.129 112.482 17.922 1.00 52.38 N
ATOM 15 C8 A B 424 60.176 113.291 18.271 1.00 52.04 C
ATOM 16 N7 A B 424 61.285 112.640 18.514 1.00 53.30 N
ATOM 17 C5 A B 424 60.938 111.309 18.331 1.00 50.91 C
ATOM 18 C6 A B 424 61.677 110.116 18.417 1.00 50.53 C
ATOM 19 N6 A B 424 62.980 110.065 18.704 1.00 49.83 N
ATOM 20 N1 A B 424 61.027 108.960 18.183 1.00 50.59 N
ATOM 21 C2 A B 424 59.727 109.010 17.877 1.00 50.61 C
ATOM 22 N3 A B 424 58.930 110.065 17.756 1.00 50.11 N
ATOM 23 C4 A B 424 59.606 111.197 17.994 1.00 50.80 C
ATOM 24 P A B 425 55.908 115.850 20.844 1.00 62.19 P
ATOM 25 OP1 A B 425 54.800 116.825 21.025 1.00 60.98 O
ATOM 26 OP2 A B 425 57.286 116.203 21.291 1.00 61.59 O
ATOM 27 O5' A B 425 55.496 114.501 21.586 1.00 62.65 O
TER
ATOM 2 P A A 222 49.974 108.037 19.434 1.00 55.19 P
ATOM 3 OP1 A A 222 49.016 109.161 19.219 1.00 52.19 O
ATOM 4 OP2 A A 222 49.722 106.713 18.797 1.00 54.31 O
ATOM 5 O5' A A 222 51.433 108.494 18.998 1.00 55.70 O
ATOM 6 C5' A A 222 51.969 109.755 19.432 1.00 54.73 C
ATOM 7 C4' A A 222 53.451 109.781 19.204 1.00 53.43 C
ATOM 8 O4' A A 222 54.049 108.699 19.964 1.00 52.90 O
ATOM 9 C3' A A 222 53.890 109.488 17.781 1.00 54.07 C
ATOM 10 O3' A A 222 53.778 110.622 16.928 1.00 56.42 O
ATOM 11 C2' A A 222 55.325 109.017 17.982 1.00 52.38 C
ATOM 12 O2' A A 222 56.256 110.061 18.175 1.00 50.96 O
ATOM 13 C1' A A 222 55.187 108.214 19.273 1.00 51.86 C
ATOM 14 N9 A A 222 55.014 106.789 19.014 1.00 49.57 N
ATOM 15 C8 A A 222 53.868 106.054 18.843 1.00 48.94 C
ATOM 16 N7 A A 222 54.092 104.777 18.627 1.00 49.93 N
ATOM 17 C5 A A 222 55.480 104.671 18.660 1.00 48.81 C
ATOM 18 C6 A A 222 56.361 103.579 18.513 1.00 49.80 C
ATOM 19 N6 A A 222 55.969 102.321 18.291 1.00 52.33 N
ATOM 20 N1 A A 222 57.685 103.827 18.603 1.00 48.30 N
ATOM 21 C2 A A 222 58.086 105.080 18.822 1.00 46.08 C
ATOM 22 N3 A A 222 57.365 106.177 18.980 1.00 45.78 N
ATOM 23 C4 A A 222 56.055 105.902 18.889 1.00 48.18 C
ATOM 24 P C A 223 54.101 110.475 15.357 1.00 59.64 P
ATOM 25 OP1 C A 223 54.129 111.854 14.805 1.00 59.71 O
ATOM 26 OP2 C A 223 53.192 109.464 14.761 1.00 60.09 O
ATOM 27 O5' C A 223 55.587 109.892 15.337 1.00 59.76 O
TER
ATOM 1 O3' A B 423 61.076 117.735 16.870 1.00 61.35 O
ATOM 2 P A B 424 60.209 117.568 18.209 1.00 63.56 P
ATOM 3 OP1 A B 424 59.325 118.764 18.315 1.00 63.98 O
ATOM 4 OP2 A B 424 61.137 117.235 19.326 1.00 64.70 O
ATOM 5 O5' A B 424 59.305 116.292 17.905 1.00 62.57 O
ATOM 6 C5' A B 424 58.105 116.403 17.121 1.00 60.38 C
ATOM 7 C4' A B 424 57.269 115.162 17.292 1.00 59.28 C
ATOM 8 O4' A B 424 57.957 114.040 16.688 1.00 57.45 O
ATOM 9 C3' A B 424 57.047 114.755 18.740 1.00 58.15 C
ATOM 10 O3' A B 424 55.926 115.451 19.284 1.00 59.44 O
ATOM 11 C2' A B 424 56.828 113.254 18.628 1.00 56.02 C
ATOM 12 O2' A B 424 55.522 112.948 18.194 1.00 55.40 O
ATOM 13 C1' A B 424 57.797 112.894 17.500 1.00 54.78 C
ATOM 14 N9 A B 424 59.129 112.482 17.922 1.00 52.38 N
ATOM 15 C8 A B 424 60.176 113.291 18.271 1.00 52.04 C
ATOM 16 N7 A B 424 61.285 112.640 18.514 1.00 53.30 N
ATOM 17 C5 A B 424 60.938 111.309 18.331 1.00 50.91 C
ATOM 18 C6 A B 424 61.677 110.116 18.417 1.00 50.53 C
ATOM 19 N6 A B 424 62.980 110.065 18.704 1.00 49.83 N
ATOM 20 N1 A B 424 61.027 108.960 18.183 1.00 50.59 N
ATOM 21 C2 A B 424 59.727 109.010 17.877 1.00 50.61 C
ATOM 22 N3 A B 424 58.930 110.065 17.756 1.00 50.11 N
ATOM 23 C4 A B 424 59.606 111.197 17.994 1.00 50.80 C
ATOM 24 P A B 425 55.908 115.850 20.844 1.00 62.19 P
ATOM 25 OP1 A B 425 54.800 116.825 21.025 1.00 60.98 O
ATOM 26 OP2 A B 425 57.286 116.203 21.291 1.00 61.59 O
ATOM 27 O5' A B 425 55.496 114.501 21.586 1.00 62.65 O
TER
Atoms:
OP1: (49.016,109.161,19.219)
OP2: (49.722,106.713,18.797)
C3': (53.890,109.488,17.781)
C1': (55.187,108.214,19.273)
C5': (51.969,109.755,19.432)
O4': (54.049,108.699,19.964)
C8: (53.868,106.054,18.843)
O2': (56.256,110.061,18.175)
C6: (56.361,103.579,18.513)
C5: (55.480,104.671,18.660)
C4: (56.055,105.902,18.889)
P: (49.974,108.037,19.434)
C4': (53.451,109.781,19.204)
C2': (55.325,109.017,17.982)
C2: (58.086,105.080,18.822)
N1: (57.685,103.827,18.603)
N3: (57.365,106.177,18.980)
N6: (55.969,102.321,18.291)
N7: (54.092,104.777,18.627)
N9: (55.014,106.789,19.014)
O5': (51.433,108.494,18.998)
O3': (53.778,110.622,16.928)
OP2: (49.722,106.713,18.797)
C3': (53.890,109.488,17.781)
C1': (55.187,108.214,19.273)
C5': (51.969,109.755,19.432)
O4': (54.049,108.699,19.964)
C8: (53.868,106.054,18.843)
O2': (56.256,110.061,18.175)
C6: (56.361,103.579,18.513)
C5: (55.480,104.671,18.660)
C4: (56.055,105.902,18.889)
P: (49.974,108.037,19.434)
C4': (53.451,109.781,19.204)
C2': (55.325,109.017,17.982)
C2: (58.086,105.080,18.822)
N1: (57.685,103.827,18.603)
N3: (57.365,106.177,18.980)
N6: (55.969,102.321,18.291)
N7: (54.092,104.777,18.627)
N9: (55.014,106.789,19.014)
O5': (51.433,108.494,18.998)
O3': (53.778,110.622,16.928)
OP1: (59.325,118.764,18.315)
OP2: (61.137,117.235,19.326)
C3': (57.047,114.755,18.740)
C1': (57.797,112.894,17.500)
C5': (58.105,116.403,17.121)
O4': (57.957,114.040,16.688)
C8: (60.176,113.291,18.271)
O2': (55.522,112.948,18.194)
C6: (61.677,110.116,18.417)
C5: (60.938,111.309,18.331)
C4: (59.606,111.197,17.994)
P: (60.209,117.568,18.209)
C4': (57.269,115.162,17.292)
C2': (56.828,113.254,18.628)
C2: (59.727,109.010,17.877)
N1: (61.027,108.960,18.183)
N3: (58.930,110.065,17.756)
N6: (62.980,110.065,18.704)
N7: (61.285,112.640,18.514)
N9: (59.129,112.482,17.922)
O5': (59.305,116.292,17.905)
O3': (55.926,115.451,19.284)
OP2: (61.137,117.235,19.326)
C3': (57.047,114.755,18.740)
C1': (57.797,112.894,17.500)
C5': (58.105,116.403,17.121)
O4': (57.957,114.040,16.688)
C8: (60.176,113.291,18.271)
O2': (55.522,112.948,18.194)
C6: (61.677,110.116,18.417)
C5: (60.938,111.309,18.331)
C4: (59.606,111.197,17.994)
P: (60.209,117.568,18.209)
C4': (57.269,115.162,17.292)
C2': (56.828,113.254,18.628)
C2: (59.727,109.010,17.877)
N1: (61.027,108.960,18.183)
N3: (58.930,110.065,17.756)
N6: (62.980,110.065,18.704)
N7: (61.285,112.640,18.514)
N9: (59.129,112.482,17.922)
O5': (59.305,116.292,17.905)
O3': (55.926,115.451,19.284)
Image (generated by PyMOL):