ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:01867:02112

Extra

PDB:
ATOM 1 O3' G A1866 106.255 91.372 57.082 1.00 64.90 O
ATOM 2 P A A1867 105.977 90.218 55.994 1.00 64.69 P
ATOM 3 OP1 A A1867 105.044 89.258 56.650 1.00 61.32 O
ATOM 4 OP2 A A1867 107.288 89.733 55.463 1.00 63.49 O
ATOM 5 O5' A A1867 105.183 90.963 54.825 1.00 63.01 O
ATOM 6 C5' A A1867 103.796 91.322 55.003 1.00 62.70 C
ATOM 7 C4' A A1867 103.420 92.487 54.118 1.00 61.57 C
ATOM 8 O4' A A1867 104.233 93.645 54.434 1.00 62.26 O
ATOM 9 C3' A A1867 103.634 92.298 52.632 1.00 61.55 C
ATOM 10 O3' A A1867 102.570 91.550 52.072 1.00 61.00 O
ATOM 11 C2' A A1867 103.656 93.738 52.134 1.00 62.09 C
ATOM 12 O2' A A1867 102.373 94.322 52.077 1.00 62.76 O
ATOM 13 C1' A A1867 104.412 94.429 53.265 1.00 62.01 C
ATOM 14 N9 A A1867 105.843 94.581 53.007 1.00 61.43 N
ATOM 15 C8 A A1867 106.866 93.725 53.322 1.00 61.86 C
ATOM 16 N7 A A1867 108.052 94.177 52.994 1.00 62.50 N
ATOM 17 C5 A A1867 107.789 95.409 52.414 1.00 61.71 C
ATOM 18 C6 A A1867 108.626 96.397 51.867 1.00 62.93 C
ATOM 19 N6 A A1867 109.958 96.299 51.810 1.00 63.44 N
ATOM 20 N1 A A1867 108.041 97.508 51.371 1.00 63.72 N
ATOM 21 C2 A A1867 106.711 97.609 51.424 1.00 62.24 C
ATOM 22 N3 A A1867 105.823 96.754 51.912 1.00 61.76 N
ATOM 23 C4 A A1867 106.433 95.663 52.402 1.00 61.14 C
ATOM 24 P A A1868 102.798 90.746 50.702 1.00 60.63 P
ATOM 25 OP1 A A1868 101.571 89.943 50.471 1.00 60.84 O
ATOM 26 OP2 A A1868 104.123 90.070 50.768 1.00 59.84 O
ATOM 27 O5' A A1868 102.843 91.887 49.595 1.00 59.62 O
TER

ATOM 1 O3' U B2111 97.874 99.988 47.557 1.00 54.79 O
ATOM 2 P A B2112 97.498 99.887 49.120 1.00 55.87 P
ATOM 3 OP1 A B2112 96.377 98.911 49.201 1.00 55.52 O
ATOM 4 OP2 A B2112 97.336 101.257 49.692 1.00 52.77 O
ATOM 5 O5' A B2112 98.781 99.227 49.798 1.00 53.89 O
ATOM 6 C5' A B2112 99.197 97.894 49.449 1.00 52.27 C
ATOM 7 C4' A B2112 100.584 97.619 49.980 1.00 52.00 C
ATOM 8 O4' A B2112 101.546 98.498 49.343 1.00 51.15 O
ATOM 9 C3' A B2112 100.790 97.870 51.464 1.00 51.75 C
ATOM 10 O3' A B2112 100.329 96.773 52.236 1.00 53.85 O
ATOM 11 C2' A B2112 102.298 98.043 51.548 1.00 50.12 C
ATOM 12 O2' A B2112 102.984 96.810 51.468 1.00 47.45 O
ATOM 13 C1' A B2112 102.569 98.836 50.270 1.00 49.84 C
ATOM 14 N9 A B2112 102.531 100.282 50.484 1.00 49.50 N
ATOM 15 C8 A B2112 101.525 101.159 50.158 1.00 49.91 C
ATOM 16 N7 A B2112 101.786 102.404 50.468 1.00 50.21 N
ATOM 17 C5 A B2112 103.049 102.346 51.038 1.00 50.41 C
ATOM 18 C6 A B2112 103.890 103.333 51.567 1.00 50.63 C
ATOM 19 N6 A B2112 103.580 104.631 51.601 1.00 51.35 N
ATOM 20 N1 A B2112 105.082 102.940 52.064 1.00 50.57 N
ATOM 21 C2 A B2112 105.399 101.641 52.018 1.00 50.25 C
ATOM 22 N3 A B2112 104.698 100.621 51.539 1.00 50.20 N
ATOM 23 C4 A B2112 103.517 101.044 51.059 1.00 50.27 C
ATOM 24 P G B2113 99.735 97.027 53.703 1.00 54.61 P
ATOM 25 OP1 G B2113 99.005 95.784 54.075 1.00 53.97 O
ATOM 26 OP2 G B2113 99.012 98.322 53.690 1.00 54.62 O
ATOM 27 O5' G B2113 101.033 97.180 54.620 1.00 54.02 O
TER

Atoms:
OP1: (105.044,89.258,56.650)
OP2: (107.288,89.733,55.463)
C3': (103.634,92.298,52.632)
C1': (104.412,94.429,53.265)
C5': (103.796,91.322,55.003)
O4': (104.233,93.645,54.434)
C8: (106.866,93.725,53.322)
O2': (102.373,94.322,52.077)
C6: (108.626,96.397,51.867)
C5: (107.789,95.409,52.414)
C4: (106.433,95.663,52.402)
P: (105.977,90.218,55.994)
C4': (103.420,92.487,54.118)
C2': (103.656,93.738,52.134)
C2: (106.711,97.609,51.424)
N1: (108.041,97.508,51.371)
N3: (105.823,96.754,51.912)
N6: (109.958,96.299,51.810)
N7: (108.052,94.177,52.994)
N9: (105.843,94.581,53.007)
O5': (105.183,90.963,54.825)
O3': (102.570,91.550,52.072)
OP1: (96.377,98.911,49.201)
OP2: (97.336,101.257,49.692)
C3': (100.790,97.870,51.464)
C1': (102.569,98.836,50.270)
C5': (99.197,97.894,49.449)
O4': (101.546,98.498,49.343)
C8: (101.525,101.159,50.158)
O2': (102.984,96.810,51.468)
C6: (103.890,103.333,51.567)
C5: (103.049,102.346,51.038)
C4: (103.517,101.044,51.059)
P: (97.498,99.887,49.120)
C4': (100.584,97.619,49.980)
C2': (102.298,98.043,51.548)
C2: (105.399,101.641,52.018)
N1: (105.082,102.940,52.064)
N3: (104.698,100.621,51.539)
N6: (103.580,104.631,51.601)
N7: (101.786,102.404,50.468)
N9: (102.531,100.282,50.484)
O5': (98.781,99.227,49.798)
O3': (100.329,96.773,52.236)
Image (generated by PyMOL):
PyMOL image
show in jmol