Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 49.866 107.637 20.915 1.00 46.11 O
ATOM 2 P A A 222 49.715 107.823 19.331 1.00 46.77 P
ATOM 3 OP1 A A 222 48.789 108.974 19.143 1.00 44.52 O
ATOM 4 OP2 A A 222 49.403 106.512 18.709 1.00 45.48 O
ATOM 5 O5' A A 222 51.176 108.254 18.866 1.00 46.59 O
ATOM 6 C5' A A 222 51.745 109.500 19.306 1.00 45.78 C
ATOM 7 C4' A A 222 53.223 109.524 19.028 1.00 44.98 C
ATOM 8 O4' A A 222 53.859 108.441 19.750 1.00 45.46 O
ATOM 9 C3' A A 222 53.620 109.269 17.588 1.00 44.90 C
ATOM 10 O3' A A 222 53.501 110.442 16.801 1.00 48.02 O
ATOM 11 C2' A A 222 55.059 108.792 17.724 1.00 43.55 C
ATOM 12 O2' A A 222 55.999 109.832 17.894 1.00 41.97 O
ATOM 13 C1' A A 222 54.970 107.969 19.007 1.00 44.49 C
ATOM 14 N9 A A 222 54.777 106.550 18.733 1.00 44.09 N
ATOM 15 C8 A A 222 53.610 105.846 18.560 1.00 43.17 C
ATOM 16 N7 A A 222 53.798 104.569 18.334 1.00 44.08 N
ATOM 17 C5 A A 222 55.180 104.425 18.363 1.00 43.50 C
ATOM 18 C6 A A 222 56.022 103.310 18.215 1.00 44.85 C
ATOM 19 N6 A A 222 55.579 102.063 18.008 1.00 47.76 N
ATOM 20 N1 A A 222 57.356 103.518 18.295 1.00 43.70 N
ATOM 21 C2 A A 222 57.799 104.758 18.517 1.00 41.24 C
ATOM 22 N3 A A 222 57.111 105.877 18.686 1.00 40.19 N
ATOM 23 C4 A A 222 55.792 105.638 18.598 1.00 42.84 C
ATOM 24 P C A 223 53.693 110.353 15.211 1.00 49.36 P
ATOM 25 OP1 C A 223 53.559 111.732 14.692 1.00 50.92 O
ATOM 26 OP2 C A 223 52.831 109.270 14.667 1.00 48.78 O
ATOM 27 O5' C A 223 55.213 109.917 15.053 1.00 48.86 O
TER
ATOM 1 O3' A B 423 60.824 117.583 16.490 1.00 54.66 O
ATOM 2 P A B 424 59.980 117.512 17.852 1.00 56.59 P
ATOM 3 OP1 A B 424 59.123 118.731 17.876 1.00 57.32 O
ATOM 4 OP2 A B 424 60.911 117.246 18.984 1.00 56.69 O
ATOM 5 O5' A B 424 59.057 116.233 17.643 1.00 54.65 O
ATOM 6 C5' A B 424 57.852 116.301 16.863 1.00 50.89 C
ATOM 7 C4' A B 424 57.069 115.027 17.033 1.00 49.42 C
ATOM 8 O4' A B 424 57.826 113.926 16.477 1.00 48.19 O
ATOM 9 C3' A B 424 56.826 114.634 18.481 1.00 48.49 C
ATOM 10 O3' A B 424 55.660 115.289 18.962 1.00 50.23 O
ATOM 11 C2' A B 424 56.664 113.123 18.397 1.00 46.78 C
ATOM 12 O2' A B 424 55.373 112.750 17.963 1.00 45.34 O
ATOM 13 C1' A B 424 57.657 112.776 17.286 1.00 46.12 C
ATOM 14 N9 A B 424 58.983 112.323 17.699 1.00 43.90 N
ATOM 15 C8 A B 424 60.073 113.088 18.026 1.00 43.66 C
ATOM 16 N7 A B 424 61.160 112.389 18.244 1.00 43.50 N
ATOM 17 C5 A B 424 60.751 111.073 18.074 1.00 42.02 C
ATOM 18 C6 A B 424 61.441 109.843 18.146 1.00 41.05 C
ATOM 19 N6 A B 424 62.744 109.731 18.404 1.00 39.38 N
ATOM 20 N1 A B 424 60.733 108.717 17.933 1.00 40.84 N
ATOM 21 C2 A B 424 59.429 108.826 17.662 1.00 42.90 C
ATOM 22 N3 A B 424 58.674 109.917 17.556 1.00 42.36 N
ATOM 23 C4 A B 424 59.405 111.019 17.770 1.00 42.56 C
ATOM 24 P A B 425 55.517 115.623 20.524 1.00 52.47 P
ATOM 25 OP1 A B 425 54.303 116.460 20.655 1.00 52.38 O
ATOM 26 OP2 A B 425 56.816 116.115 21.058 1.00 52.69 O
ATOM 27 O5' A B 425 55.213 114.209 21.189 1.00 53.84 O
TER
ATOM 2 P A A 222 49.715 107.823 19.331 1.00 46.77 P
ATOM 3 OP1 A A 222 48.789 108.974 19.143 1.00 44.52 O
ATOM 4 OP2 A A 222 49.403 106.512 18.709 1.00 45.48 O
ATOM 5 O5' A A 222 51.176 108.254 18.866 1.00 46.59 O
ATOM 6 C5' A A 222 51.745 109.500 19.306 1.00 45.78 C
ATOM 7 C4' A A 222 53.223 109.524 19.028 1.00 44.98 C
ATOM 8 O4' A A 222 53.859 108.441 19.750 1.00 45.46 O
ATOM 9 C3' A A 222 53.620 109.269 17.588 1.00 44.90 C
ATOM 10 O3' A A 222 53.501 110.442 16.801 1.00 48.02 O
ATOM 11 C2' A A 222 55.059 108.792 17.724 1.00 43.55 C
ATOM 12 O2' A A 222 55.999 109.832 17.894 1.00 41.97 O
ATOM 13 C1' A A 222 54.970 107.969 19.007 1.00 44.49 C
ATOM 14 N9 A A 222 54.777 106.550 18.733 1.00 44.09 N
ATOM 15 C8 A A 222 53.610 105.846 18.560 1.00 43.17 C
ATOM 16 N7 A A 222 53.798 104.569 18.334 1.00 44.08 N
ATOM 17 C5 A A 222 55.180 104.425 18.363 1.00 43.50 C
ATOM 18 C6 A A 222 56.022 103.310 18.215 1.00 44.85 C
ATOM 19 N6 A A 222 55.579 102.063 18.008 1.00 47.76 N
ATOM 20 N1 A A 222 57.356 103.518 18.295 1.00 43.70 N
ATOM 21 C2 A A 222 57.799 104.758 18.517 1.00 41.24 C
ATOM 22 N3 A A 222 57.111 105.877 18.686 1.00 40.19 N
ATOM 23 C4 A A 222 55.792 105.638 18.598 1.00 42.84 C
ATOM 24 P C A 223 53.693 110.353 15.211 1.00 49.36 P
ATOM 25 OP1 C A 223 53.559 111.732 14.692 1.00 50.92 O
ATOM 26 OP2 C A 223 52.831 109.270 14.667 1.00 48.78 O
ATOM 27 O5' C A 223 55.213 109.917 15.053 1.00 48.86 O
TER
ATOM 1 O3' A B 423 60.824 117.583 16.490 1.00 54.66 O
ATOM 2 P A B 424 59.980 117.512 17.852 1.00 56.59 P
ATOM 3 OP1 A B 424 59.123 118.731 17.876 1.00 57.32 O
ATOM 4 OP2 A B 424 60.911 117.246 18.984 1.00 56.69 O
ATOM 5 O5' A B 424 59.057 116.233 17.643 1.00 54.65 O
ATOM 6 C5' A B 424 57.852 116.301 16.863 1.00 50.89 C
ATOM 7 C4' A B 424 57.069 115.027 17.033 1.00 49.42 C
ATOM 8 O4' A B 424 57.826 113.926 16.477 1.00 48.19 O
ATOM 9 C3' A B 424 56.826 114.634 18.481 1.00 48.49 C
ATOM 10 O3' A B 424 55.660 115.289 18.962 1.00 50.23 O
ATOM 11 C2' A B 424 56.664 113.123 18.397 1.00 46.78 C
ATOM 12 O2' A B 424 55.373 112.750 17.963 1.00 45.34 O
ATOM 13 C1' A B 424 57.657 112.776 17.286 1.00 46.12 C
ATOM 14 N9 A B 424 58.983 112.323 17.699 1.00 43.90 N
ATOM 15 C8 A B 424 60.073 113.088 18.026 1.00 43.66 C
ATOM 16 N7 A B 424 61.160 112.389 18.244 1.00 43.50 N
ATOM 17 C5 A B 424 60.751 111.073 18.074 1.00 42.02 C
ATOM 18 C6 A B 424 61.441 109.843 18.146 1.00 41.05 C
ATOM 19 N6 A B 424 62.744 109.731 18.404 1.00 39.38 N
ATOM 20 N1 A B 424 60.733 108.717 17.933 1.00 40.84 N
ATOM 21 C2 A B 424 59.429 108.826 17.662 1.00 42.90 C
ATOM 22 N3 A B 424 58.674 109.917 17.556 1.00 42.36 N
ATOM 23 C4 A B 424 59.405 111.019 17.770 1.00 42.56 C
ATOM 24 P A B 425 55.517 115.623 20.524 1.00 52.47 P
ATOM 25 OP1 A B 425 54.303 116.460 20.655 1.00 52.38 O
ATOM 26 OP2 A B 425 56.816 116.115 21.058 1.00 52.69 O
ATOM 27 O5' A B 425 55.213 114.209 21.189 1.00 53.84 O
TER
Atoms:
OP1: (48.789,108.974,19.143)
OP2: (49.403,106.512,18.709)
C3': (53.620,109.269,17.588)
C1': (54.970,107.969,19.007)
C5': (51.745,109.500,19.306)
O4': (53.859,108.441,19.750)
C8: (53.610,105.846,18.560)
O2': (55.999,109.832,17.894)
C6: (56.022,103.310,18.215)
C5: (55.180,104.425,18.363)
C4: (55.792,105.638,18.598)
P: (49.715,107.823,19.331)
C4': (53.223,109.524,19.028)
C2': (55.059,108.792,17.724)
C2: (57.799,104.758,18.517)
N1: (57.356,103.518,18.295)
N3: (57.111,105.877,18.686)
N6: (55.579,102.063,18.008)
N7: (53.798,104.569,18.334)
N9: (54.777,106.550,18.733)
O5': (51.176,108.254,18.866)
O3': (53.501,110.442,16.801)
OP2: (49.403,106.512,18.709)
C3': (53.620,109.269,17.588)
C1': (54.970,107.969,19.007)
C5': (51.745,109.500,19.306)
O4': (53.859,108.441,19.750)
C8: (53.610,105.846,18.560)
O2': (55.999,109.832,17.894)
C6: (56.022,103.310,18.215)
C5: (55.180,104.425,18.363)
C4: (55.792,105.638,18.598)
P: (49.715,107.823,19.331)
C4': (53.223,109.524,19.028)
C2': (55.059,108.792,17.724)
C2: (57.799,104.758,18.517)
N1: (57.356,103.518,18.295)
N3: (57.111,105.877,18.686)
N6: (55.579,102.063,18.008)
N7: (53.798,104.569,18.334)
N9: (54.777,106.550,18.733)
O5': (51.176,108.254,18.866)
O3': (53.501,110.442,16.801)
OP1: (59.123,118.731,17.876)
OP2: (60.911,117.246,18.984)
C3': (56.826,114.634,18.481)
C1': (57.657,112.776,17.286)
C5': (57.852,116.301,16.863)
O4': (57.826,113.926,16.477)
C8: (60.073,113.088,18.026)
O2': (55.373,112.750,17.963)
C6: (61.441,109.843,18.146)
C5: (60.751,111.073,18.074)
C4: (59.405,111.019,17.770)
P: (59.980,117.512,17.852)
C4': (57.069,115.027,17.033)
C2': (56.664,113.123,18.397)
C2: (59.429,108.826,17.662)
N1: (60.733,108.717,17.933)
N3: (58.674,109.917,17.556)
N6: (62.744,109.731,18.404)
N7: (61.160,112.389,18.244)
N9: (58.983,112.323,17.699)
O5': (59.057,116.233,17.643)
O3': (55.660,115.289,18.962)
OP2: (60.911,117.246,18.984)
C3': (56.826,114.634,18.481)
C1': (57.657,112.776,17.286)
C5': (57.852,116.301,16.863)
O4': (57.826,113.926,16.477)
C8: (60.073,113.088,18.026)
O2': (55.373,112.750,17.963)
C6: (61.441,109.843,18.146)
C5: (60.751,111.073,18.074)
C4: (59.405,111.019,17.770)
P: (59.980,117.512,17.852)
C4': (57.069,115.027,17.033)
C2': (56.664,113.123,18.397)
C2: (59.429,108.826,17.662)
N1: (60.733,108.717,17.933)
N3: (58.674,109.917,17.556)
N6: (62.744,109.731,18.404)
N7: (61.160,112.389,18.244)
N9: (58.983,112.323,17.699)
O5': (59.057,116.233,17.643)
O3': (55.660,115.289,18.962)
Image (generated by PyMOL):