Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0222:0424
Extra
PDB:
ATOM 1 O3' U A 221 49.780 107.543 20.941 1.00 34.51 O
ATOM 2 P A A 222 49.622 107.688 19.355 1.00 36.00 P
ATOM 3 OP1 A A 222 48.634 108.788 19.161 1.00 34.60 O
ATOM 4 OP2 A A 222 49.359 106.349 18.782 1.00 35.00 O
ATOM 5 O5' A A 222 51.061 108.169 18.870 1.00 34.98 O
ATOM 6 C5' A A 222 51.597 109.431 19.316 1.00 35.31 C
ATOM 7 C4' A A 222 53.079 109.493 19.060 1.00 35.68 C
ATOM 8 O4' A A 222 53.756 108.464 19.826 1.00 35.36 O
ATOM 9 C3' A A 222 53.488 109.214 17.630 1.00 36.76 C
ATOM 10 O3' A A 222 53.325 110.375 16.832 1.00 41.12 O
ATOM 11 C2' A A 222 54.936 108.764 17.784 1.00 34.59 C
ATOM 12 O2' A A 222 55.856 109.826 17.935 1.00 32.75 O
ATOM 13 C1' A A 222 54.852 107.960 19.083 1.00 33.90 C
ATOM 14 N9 A A 222 54.597 106.549 18.823 1.00 33.12 N
ATOM 15 C8 A A 222 53.382 105.933 18.669 1.00 32.92 C
ATOM 16 N7 A A 222 53.472 104.654 18.410 1.00 33.58 N
ATOM 17 C5 A A 222 54.837 104.411 18.406 1.00 32.35 C
ATOM 18 C6 A A 222 55.579 103.250 18.197 1.00 34.17 C
ATOM 19 N6 A A 222 55.021 102.060 17.954 1.00 37.16 N
ATOM 20 N1 A A 222 56.929 103.345 18.249 1.00 34.10 N
ATOM 21 C2 A A 222 57.474 104.536 18.508 1.00 31.29 C
ATOM 22 N3 A A 222 56.877 105.698 18.734 1.00 31.09 N
ATOM 23 C4 A A 222 55.542 105.566 18.664 1.00 31.96 C
ATOM 24 P C A 223 53.477 110.272 15.240 1.00 44.10 P
ATOM 25 OP1 C A 223 53.240 111.640 14.710 1.00 44.42 O
ATOM 26 OP2 C A 223 52.667 109.135 14.730 1.00 45.16 O
ATOM 27 O5' C A 223 55.011 109.901 15.055 1.00 43.28 O
TER
ATOM 1 O3' A B 423 60.717 117.438 16.500 1.00 42.43 O
ATOM 2 P A B 424 59.847 117.316 17.838 1.00 43.08 P
ATOM 3 OP1 A B 424 58.993 118.529 17.906 1.00 43.66 O
ATOM 4 OP2 A B 424 60.771 117.005 18.959 1.00 43.22 O
ATOM 5 O5' A B 424 58.923 116.043 17.573 1.00 43.13 O
ATOM 6 C5' A B 424 57.679 116.141 16.843 1.00 39.11 C
ATOM 7 C4' A B 424 56.874 114.876 17.033 1.00 37.58 C
ATOM 8 O4' A B 424 57.603 113.761 16.463 1.00 37.66 O
ATOM 9 C3' A B 424 56.654 114.487 18.485 1.00 36.39 C
ATOM 10 O3' A B 424 55.500 115.130 19.005 1.00 37.52 O
ATOM 11 C2' A B 424 56.488 112.978 18.416 1.00 35.71 C
ATOM 12 O2' A B 424 55.180 112.622 18.032 1.00 32.07 O
ATOM 13 C1' A B 424 57.460 112.618 17.291 1.00 36.33 C
ATOM 14 N9 A B 424 58.802 112.189 17.693 1.00 36.64 N
ATOM 15 C8 A B 424 59.879 112.986 17.990 1.00 37.04 C
ATOM 16 N7 A B 424 60.983 112.320 18.215 1.00 36.99 N
ATOM 17 C5 A B 424 60.606 110.994 18.079 1.00 36.21 C
ATOM 18 C6 A B 424 61.328 109.792 18.174 1.00 36.90 C
ATOM 19 N6 A B 424 62.639 109.733 18.412 1.00 36.87 N
ATOM 20 N1 A B 424 60.651 108.637 18.003 1.00 36.79 N
ATOM 21 C2 A B 424 59.342 108.699 17.740 1.00 37.77 C
ATOM 22 N3 A B 424 58.556 109.767 17.608 1.00 37.79 N
ATOM 23 C4 A B 424 59.258 110.897 17.789 1.00 36.64 C
ATOM 24 P A B 425 55.416 115.462 20.572 1.00 40.54 P
ATOM 25 OP1 A B 425 54.267 116.376 20.771 1.00 40.62 O
ATOM 26 OP2 A B 425 56.764 115.860 21.053 1.00 41.64 O
ATOM 27 O5' A B 425 55.074 114.060 21.245 1.00 42.68 O
TER
ATOM 2 P A A 222 49.622 107.688 19.355 1.00 36.00 P
ATOM 3 OP1 A A 222 48.634 108.788 19.161 1.00 34.60 O
ATOM 4 OP2 A A 222 49.359 106.349 18.782 1.00 35.00 O
ATOM 5 O5' A A 222 51.061 108.169 18.870 1.00 34.98 O
ATOM 6 C5' A A 222 51.597 109.431 19.316 1.00 35.31 C
ATOM 7 C4' A A 222 53.079 109.493 19.060 1.00 35.68 C
ATOM 8 O4' A A 222 53.756 108.464 19.826 1.00 35.36 O
ATOM 9 C3' A A 222 53.488 109.214 17.630 1.00 36.76 C
ATOM 10 O3' A A 222 53.325 110.375 16.832 1.00 41.12 O
ATOM 11 C2' A A 222 54.936 108.764 17.784 1.00 34.59 C
ATOM 12 O2' A A 222 55.856 109.826 17.935 1.00 32.75 O
ATOM 13 C1' A A 222 54.852 107.960 19.083 1.00 33.90 C
ATOM 14 N9 A A 222 54.597 106.549 18.823 1.00 33.12 N
ATOM 15 C8 A A 222 53.382 105.933 18.669 1.00 32.92 C
ATOM 16 N7 A A 222 53.472 104.654 18.410 1.00 33.58 N
ATOM 17 C5 A A 222 54.837 104.411 18.406 1.00 32.35 C
ATOM 18 C6 A A 222 55.579 103.250 18.197 1.00 34.17 C
ATOM 19 N6 A A 222 55.021 102.060 17.954 1.00 37.16 N
ATOM 20 N1 A A 222 56.929 103.345 18.249 1.00 34.10 N
ATOM 21 C2 A A 222 57.474 104.536 18.508 1.00 31.29 C
ATOM 22 N3 A A 222 56.877 105.698 18.734 1.00 31.09 N
ATOM 23 C4 A A 222 55.542 105.566 18.664 1.00 31.96 C
ATOM 24 P C A 223 53.477 110.272 15.240 1.00 44.10 P
ATOM 25 OP1 C A 223 53.240 111.640 14.710 1.00 44.42 O
ATOM 26 OP2 C A 223 52.667 109.135 14.730 1.00 45.16 O
ATOM 27 O5' C A 223 55.011 109.901 15.055 1.00 43.28 O
TER
ATOM 1 O3' A B 423 60.717 117.438 16.500 1.00 42.43 O
ATOM 2 P A B 424 59.847 117.316 17.838 1.00 43.08 P
ATOM 3 OP1 A B 424 58.993 118.529 17.906 1.00 43.66 O
ATOM 4 OP2 A B 424 60.771 117.005 18.959 1.00 43.22 O
ATOM 5 O5' A B 424 58.923 116.043 17.573 1.00 43.13 O
ATOM 6 C5' A B 424 57.679 116.141 16.843 1.00 39.11 C
ATOM 7 C4' A B 424 56.874 114.876 17.033 1.00 37.58 C
ATOM 8 O4' A B 424 57.603 113.761 16.463 1.00 37.66 O
ATOM 9 C3' A B 424 56.654 114.487 18.485 1.00 36.39 C
ATOM 10 O3' A B 424 55.500 115.130 19.005 1.00 37.52 O
ATOM 11 C2' A B 424 56.488 112.978 18.416 1.00 35.71 C
ATOM 12 O2' A B 424 55.180 112.622 18.032 1.00 32.07 O
ATOM 13 C1' A B 424 57.460 112.618 17.291 1.00 36.33 C
ATOM 14 N9 A B 424 58.802 112.189 17.693 1.00 36.64 N
ATOM 15 C8 A B 424 59.879 112.986 17.990 1.00 37.04 C
ATOM 16 N7 A B 424 60.983 112.320 18.215 1.00 36.99 N
ATOM 17 C5 A B 424 60.606 110.994 18.079 1.00 36.21 C
ATOM 18 C6 A B 424 61.328 109.792 18.174 1.00 36.90 C
ATOM 19 N6 A B 424 62.639 109.733 18.412 1.00 36.87 N
ATOM 20 N1 A B 424 60.651 108.637 18.003 1.00 36.79 N
ATOM 21 C2 A B 424 59.342 108.699 17.740 1.00 37.77 C
ATOM 22 N3 A B 424 58.556 109.767 17.608 1.00 37.79 N
ATOM 23 C4 A B 424 59.258 110.897 17.789 1.00 36.64 C
ATOM 24 P A B 425 55.416 115.462 20.572 1.00 40.54 P
ATOM 25 OP1 A B 425 54.267 116.376 20.771 1.00 40.62 O
ATOM 26 OP2 A B 425 56.764 115.860 21.053 1.00 41.64 O
ATOM 27 O5' A B 425 55.074 114.060 21.245 1.00 42.68 O
TER
Atoms:
OP1: (48.634,108.788,19.161)
OP2: (49.359,106.349,18.782)
C3': (53.488,109.214,17.630)
C1': (54.852,107.960,19.083)
C5': (51.597,109.431,19.316)
O4': (53.756,108.464,19.826)
C8: (53.382,105.933,18.669)
O2': (55.856,109.826,17.935)
C6: (55.579,103.250,18.197)
C5: (54.837,104.411,18.406)
C4: (55.542,105.566,18.664)
P: (49.622,107.688,19.355)
C4': (53.079,109.493,19.060)
C2': (54.936,108.764,17.784)
C2: (57.474,104.536,18.508)
N1: (56.929,103.345,18.249)
N3: (56.877,105.698,18.734)
N6: (55.021,102.060,17.954)
N7: (53.472,104.654,18.410)
N9: (54.597,106.549,18.823)
O5': (51.061,108.169,18.870)
O3': (53.325,110.375,16.832)
OP2: (49.359,106.349,18.782)
C3': (53.488,109.214,17.630)
C1': (54.852,107.960,19.083)
C5': (51.597,109.431,19.316)
O4': (53.756,108.464,19.826)
C8: (53.382,105.933,18.669)
O2': (55.856,109.826,17.935)
C6: (55.579,103.250,18.197)
C5: (54.837,104.411,18.406)
C4: (55.542,105.566,18.664)
P: (49.622,107.688,19.355)
C4': (53.079,109.493,19.060)
C2': (54.936,108.764,17.784)
C2: (57.474,104.536,18.508)
N1: (56.929,103.345,18.249)
N3: (56.877,105.698,18.734)
N6: (55.021,102.060,17.954)
N7: (53.472,104.654,18.410)
N9: (54.597,106.549,18.823)
O5': (51.061,108.169,18.870)
O3': (53.325,110.375,16.832)
OP1: (58.993,118.529,17.906)
OP2: (60.771,117.005,18.959)
C3': (56.654,114.487,18.485)
C1': (57.460,112.618,17.291)
C5': (57.679,116.141,16.843)
O4': (57.603,113.761,16.463)
C8: (59.879,112.986,17.990)
O2': (55.180,112.622,18.032)
C6: (61.328,109.792,18.174)
C5: (60.606,110.994,18.079)
C4: (59.258,110.897,17.789)
P: (59.847,117.316,17.838)
C4': (56.874,114.876,17.033)
C2': (56.488,112.978,18.416)
C2: (59.342,108.699,17.740)
N1: (60.651,108.637,18.003)
N3: (58.556,109.767,17.608)
N6: (62.639,109.733,18.412)
N7: (60.983,112.320,18.215)
N9: (58.802,112.189,17.693)
O5': (58.923,116.043,17.573)
O3': (55.500,115.130,19.005)
OP2: (60.771,117.005,18.959)
C3': (56.654,114.487,18.485)
C1': (57.460,112.618,17.291)
C5': (57.679,116.141,16.843)
O4': (57.603,113.761,16.463)
C8: (59.879,112.986,17.990)
O2': (55.180,112.622,18.032)
C6: (61.328,109.792,18.174)
C5: (60.606,110.994,18.079)
C4: (59.258,110.897,17.789)
P: (59.847,117.316,17.838)
C4': (56.874,114.876,17.033)
C2': (56.488,112.978,18.416)
C2: (59.342,108.699,17.740)
N1: (60.651,108.637,18.003)
N3: (58.556,109.767,17.608)
N6: (62.639,109.733,18.412)
N7: (60.983,112.320,18.215)
N9: (58.802,112.189,17.693)
O5': (58.923,116.043,17.573)
O3': (55.500,115.130,19.005)
Image (generated by PyMOL):