Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01317:0630
Extra
PDB:
ATOM 1 O3' A A1316 43.936 122.194 80.020 1.00 30.62 O
ATOM 2 P A A1317 45.029 123.364 79.940 1.00 28.33 P
ATOM 3 OP1 A A1317 45.376 123.674 81.333 1.00 29.12 O
ATOM 4 OP2 A A1317 44.534 124.449 79.059 1.00 28.52 O
ATOM 5 O5' A A1317 46.269 122.655 79.246 1.00 25.12 O
ATOM 6 C5' A A1317 46.810 121.460 79.808 1.00 25.65 C
ATOM 7 C4' A A1317 47.498 120.653 78.749 1.00 25.81 C
ATOM 8 O4' A A1317 46.566 120.367 77.684 1.00 26.69 O
ATOM 9 C3' A A1317 48.616 121.374 78.022 1.00 25.40 C
ATOM 10 O3' A A1317 49.788 121.287 78.818 1.00 25.31 O
ATOM 11 C2' A A1317 48.751 120.555 76.740 1.00 24.69 C
ATOM 12 O2' A A1317 49.555 119.413 76.942 1.00 25.19 O
ATOM 13 C1' A A1317 47.304 120.097 76.501 1.00 24.88 C
ATOM 14 N9 A A1317 46.594 120.673 75.357 1.00 22.11 N
ATOM 15 C8 A A1317 45.505 121.513 75.384 1.00 23.03 C
ATOM 16 N7 A A1317 45.049 121.828 74.199 1.00 21.93 N
ATOM 17 C5 A A1317 45.896 121.157 73.329 1.00 22.48 C
ATOM 18 C6 A A1317 45.937 121.075 71.924 1.00 20.84 C
ATOM 19 N6 A A1317 45.057 121.665 71.123 1.00 18.93 N
ATOM 20 N1 A A1317 46.922 120.342 71.367 1.00 20.78 N
ATOM 21 C2 A A1317 47.792 119.723 72.174 1.00 21.73 C
ATOM 22 N3 A A1317 47.846 119.708 73.506 1.00 23.78 N
ATOM 23 C4 A A1317 46.861 120.454 74.029 1.00 21.69 C
ATOM 24 P U A1318 50.919 122.423 78.730 1.00 27.05 P
ATOM 25 OP1 U A1318 51.301 122.647 77.313 1.00 23.32 O
ATOM 26 OP2 U A1318 51.949 122.010 79.714 1.00 24.86 O
ATOM 27 O5' U A1318 50.219 123.754 79.245 1.00 25.49 O
TER
ATOM 1 O3' G B 629 39.919 125.412 64.377 1.00 27.07 O
ATOM 2 P G B 630 39.711 123.816 64.475 1.00 30.18 P
ATOM 3 OP1 G B 630 40.038 123.218 63.156 1.00 29.98 O
ATOM 4 OP2 G B 630 38.383 123.559 65.080 1.00 29.64 O
ATOM 5 O5' G B 630 40.827 123.341 65.509 1.00 29.84 O
ATOM 6 C5' G B 630 42.226 123.376 65.167 1.00 27.25 C
ATOM 7 C4' G B 630 43.056 122.854 66.314 1.00 27.12 C
ATOM 8 O4' G B 630 42.912 123.718 67.470 1.00 28.08 O
ATOM 9 C3' G B 630 42.634 121.497 66.830 1.00 27.85 C
ATOM 10 O3' G B 630 43.176 120.472 66.020 1.00 29.44 O
ATOM 11 C2' G B 630 43.195 121.499 68.241 1.00 26.94 C
ATOM 12 O2' G B 630 44.588 121.270 68.266 1.00 24.27 O
ATOM 13 C1' G B 630 42.917 122.941 68.657 1.00 26.73 C
ATOM 14 N9 G B 630 41.613 123.098 69.290 1.00 28.19 N
ATOM 15 C8 G B 630 40.447 123.459 68.667 1.00 28.15 C
ATOM 16 N7 G B 630 39.430 123.515 69.476 1.00 29.27 N
ATOM 17 C5 G B 630 39.954 123.171 70.713 1.00 29.09 C
ATOM 18 C6 G B 630 39.318 123.054 71.970 1.00 29.66 C
ATOM 19 O6 G B 630 38.135 123.243 72.247 1.00 32.80 O
ATOM 20 N1 G B 630 40.208 122.671 72.966 1.00 30.24 N
ATOM 21 C2 G B 630 41.545 122.435 72.777 1.00 31.74 C
ATOM 22 N2 G B 630 42.233 122.071 73.872 1.00 31.36 N
ATOM 23 N3 G B 630 42.159 122.546 71.602 1.00 31.27 N
ATOM 24 C4 G B 630 41.302 122.913 70.619 1.00 29.92 C
ATOM 25 P A B 631 42.190 119.493 65.226 1.00 27.53 P
ATOM 26 OP1 A B 631 42.413 119.750 63.787 1.00 31.23 O
ATOM 27 OP2 A B 631 40.824 119.614 65.788 1.00 25.57 O
ATOM 28 O5' A B 631 42.748 118.052 65.581 1.00 23.79 O
TER
ATOM 2 P A A1317 45.029 123.364 79.940 1.00 28.33 P
ATOM 3 OP1 A A1317 45.376 123.674 81.333 1.00 29.12 O
ATOM 4 OP2 A A1317 44.534 124.449 79.059 1.00 28.52 O
ATOM 5 O5' A A1317 46.269 122.655 79.246 1.00 25.12 O
ATOM 6 C5' A A1317 46.810 121.460 79.808 1.00 25.65 C
ATOM 7 C4' A A1317 47.498 120.653 78.749 1.00 25.81 C
ATOM 8 O4' A A1317 46.566 120.367 77.684 1.00 26.69 O
ATOM 9 C3' A A1317 48.616 121.374 78.022 1.00 25.40 C
ATOM 10 O3' A A1317 49.788 121.287 78.818 1.00 25.31 O
ATOM 11 C2' A A1317 48.751 120.555 76.740 1.00 24.69 C
ATOM 12 O2' A A1317 49.555 119.413 76.942 1.00 25.19 O
ATOM 13 C1' A A1317 47.304 120.097 76.501 1.00 24.88 C
ATOM 14 N9 A A1317 46.594 120.673 75.357 1.00 22.11 N
ATOM 15 C8 A A1317 45.505 121.513 75.384 1.00 23.03 C
ATOM 16 N7 A A1317 45.049 121.828 74.199 1.00 21.93 N
ATOM 17 C5 A A1317 45.896 121.157 73.329 1.00 22.48 C
ATOM 18 C6 A A1317 45.937 121.075 71.924 1.00 20.84 C
ATOM 19 N6 A A1317 45.057 121.665 71.123 1.00 18.93 N
ATOM 20 N1 A A1317 46.922 120.342 71.367 1.00 20.78 N
ATOM 21 C2 A A1317 47.792 119.723 72.174 1.00 21.73 C
ATOM 22 N3 A A1317 47.846 119.708 73.506 1.00 23.78 N
ATOM 23 C4 A A1317 46.861 120.454 74.029 1.00 21.69 C
ATOM 24 P U A1318 50.919 122.423 78.730 1.00 27.05 P
ATOM 25 OP1 U A1318 51.301 122.647 77.313 1.00 23.32 O
ATOM 26 OP2 U A1318 51.949 122.010 79.714 1.00 24.86 O
ATOM 27 O5' U A1318 50.219 123.754 79.245 1.00 25.49 O
TER
ATOM 1 O3' G B 629 39.919 125.412 64.377 1.00 27.07 O
ATOM 2 P G B 630 39.711 123.816 64.475 1.00 30.18 P
ATOM 3 OP1 G B 630 40.038 123.218 63.156 1.00 29.98 O
ATOM 4 OP2 G B 630 38.383 123.559 65.080 1.00 29.64 O
ATOM 5 O5' G B 630 40.827 123.341 65.509 1.00 29.84 O
ATOM 6 C5' G B 630 42.226 123.376 65.167 1.00 27.25 C
ATOM 7 C4' G B 630 43.056 122.854 66.314 1.00 27.12 C
ATOM 8 O4' G B 630 42.912 123.718 67.470 1.00 28.08 O
ATOM 9 C3' G B 630 42.634 121.497 66.830 1.00 27.85 C
ATOM 10 O3' G B 630 43.176 120.472 66.020 1.00 29.44 O
ATOM 11 C2' G B 630 43.195 121.499 68.241 1.00 26.94 C
ATOM 12 O2' G B 630 44.588 121.270 68.266 1.00 24.27 O
ATOM 13 C1' G B 630 42.917 122.941 68.657 1.00 26.73 C
ATOM 14 N9 G B 630 41.613 123.098 69.290 1.00 28.19 N
ATOM 15 C8 G B 630 40.447 123.459 68.667 1.00 28.15 C
ATOM 16 N7 G B 630 39.430 123.515 69.476 1.00 29.27 N
ATOM 17 C5 G B 630 39.954 123.171 70.713 1.00 29.09 C
ATOM 18 C6 G B 630 39.318 123.054 71.970 1.00 29.66 C
ATOM 19 O6 G B 630 38.135 123.243 72.247 1.00 32.80 O
ATOM 20 N1 G B 630 40.208 122.671 72.966 1.00 30.24 N
ATOM 21 C2 G B 630 41.545 122.435 72.777 1.00 31.74 C
ATOM 22 N2 G B 630 42.233 122.071 73.872 1.00 31.36 N
ATOM 23 N3 G B 630 42.159 122.546 71.602 1.00 31.27 N
ATOM 24 C4 G B 630 41.302 122.913 70.619 1.00 29.92 C
ATOM 25 P A B 631 42.190 119.493 65.226 1.00 27.53 P
ATOM 26 OP1 A B 631 42.413 119.750 63.787 1.00 31.23 O
ATOM 27 OP2 A B 631 40.824 119.614 65.788 1.00 25.57 O
ATOM 28 O5' A B 631 42.748 118.052 65.581 1.00 23.79 O
TER
Atoms:
OP1: (45.376,123.674,81.333)
OP2: (44.534,124.449,79.059)
C3': (48.616,121.374,78.022)
C1': (47.304,120.097,76.501)
C5': (46.810,121.460,79.808)
O4': (46.566,120.367,77.684)
C8: (45.505,121.513,75.384)
O2': (49.555,119.413,76.942)
C6: (45.937,121.075,71.924)
C5: (45.896,121.157,73.329)
C4: (46.861,120.454,74.029)
P: (45.029,123.364,79.940)
C4': (47.498,120.653,78.749)
C2': (48.751,120.555,76.740)
C2: (47.792,119.723,72.174)
N1: (46.922,120.342,71.367)
N3: (47.846,119.708,73.506)
N6: (45.057,121.665,71.123)
N7: (45.049,121.828,74.199)
N9: (46.594,120.673,75.357)
O5': (46.269,122.655,79.246)
O3': (49.788,121.287,78.818)
OP2: (44.534,124.449,79.059)
C3': (48.616,121.374,78.022)
C1': (47.304,120.097,76.501)
C5': (46.810,121.460,79.808)
O4': (46.566,120.367,77.684)
C8: (45.505,121.513,75.384)
O2': (49.555,119.413,76.942)
C6: (45.937,121.075,71.924)
C5: (45.896,121.157,73.329)
C4: (46.861,120.454,74.029)
P: (45.029,123.364,79.940)
C4': (47.498,120.653,78.749)
C2': (48.751,120.555,76.740)
C2: (47.792,119.723,72.174)
N1: (46.922,120.342,71.367)
N3: (47.846,119.708,73.506)
N6: (45.057,121.665,71.123)
N7: (45.049,121.828,74.199)
N9: (46.594,120.673,75.357)
O5': (46.269,122.655,79.246)
O3': (49.788,121.287,78.818)
OP1: (40.038,123.218,63.156)
OP2: (38.383,123.559,65.080)
C3': (42.634,121.497,66.830)
C1': (42.917,122.941,68.657)
C5': (42.226,123.376,65.167)
O6: (38.135,123.243,72.247)
O4': (42.912,123.718,67.470)
C8: (40.447,123.459,68.667)
C2: (41.545,122.435,72.777)
C6: (39.318,123.054,71.970)
C5: (39.954,123.171,70.713)
C4: (41.302,122.913,70.619)
P: (39.711,123.816,64.475)
C4': (43.056,122.854,66.314)
C2': (43.195,121.499,68.241)
O2': (44.588,121.270,68.266)
N1: (40.208,122.671,72.966)
N2: (42.233,122.071,73.872)
N3: (42.159,122.546,71.602)
N7: (39.430,123.515,69.476)
N9: (41.613,123.098,69.290)
O5': (40.827,123.341,65.509)
O3': (43.176,120.472,66.020)
OP2: (38.383,123.559,65.080)
C3': (42.634,121.497,66.830)
C1': (42.917,122.941,68.657)
C5': (42.226,123.376,65.167)
O6: (38.135,123.243,72.247)
O4': (42.912,123.718,67.470)
C8: (40.447,123.459,68.667)
C2: (41.545,122.435,72.777)
C6: (39.318,123.054,71.970)
C5: (39.954,123.171,70.713)
C4: (41.302,122.913,70.619)
P: (39.711,123.816,64.475)
C4': (43.056,122.854,66.314)
C2': (43.195,121.499,68.241)
O2': (44.588,121.270,68.266)
N1: (40.208,122.671,72.966)
N2: (42.233,122.071,73.872)
N3: (42.159,122.546,71.602)
N7: (39.430,123.515,69.476)
N9: (41.613,123.098,69.290)
O5': (40.827,123.341,65.509)
O3': (43.176,120.472,66.020)
Image (generated by PyMOL):