Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VQE:A119:A253
Extra
PDB:
ATOM 1 O3' G A 118 108.334 73.350 -25.130 1.00 33.86 O
ATOM 2 P A A 119 108.731 72.418 -26.401 1.00 32.11 P
ATOM 3 OP1 A A 119 109.817 73.035 -27.174 1.00 29.81 O
ATOM 4 OP2 A A 119 107.492 72.029 -27.085 1.00 34.47 O
ATOM 5 O5' A A 119 109.323 71.109 -25.752 1.00 33.29 O
ATOM 6 C5' A A 119 109.117 69.835 -26.376 1.00 32.57 C
ATOM 7 C4' A A 119 109.531 68.732 -25.445 1.00 33.11 C
ATOM 8 O4' A A 119 110.957 68.832 -25.213 1.00 33.44 O
ATOM 9 C3' A A 119 108.863 68.728 -24.077 1.00 33.22 C
ATOM 10 O3' A A 119 108.662 67.350 -23.722 1.00 33.68 O
ATOM 11 C2' A A 119 109.907 69.407 -23.192 1.00 33.55 C
ATOM 12 O2' A A 119 109.857 69.034 -21.833 1.00 34.41 O
ATOM 13 C1' A A 119 111.212 68.931 -23.828 1.00 34.65 C
ATOM 14 N9 A A 119 112.367 69.816 -23.650 1.00 36.11 N
ATOM 15 C8 A A 119 112.471 71.130 -24.034 1.00 36.24 C
ATOM 16 N7 A A 119 113.651 71.654 -23.811 1.00 37.56 N
ATOM 17 C5 A A 119 114.373 70.621 -23.226 1.00 36.77 C
ATOM 18 C6 A A 119 115.705 70.534 -22.768 1.00 36.76 C
ATOM 19 N6 A A 119 116.573 71.555 -22.814 1.00 36.27 N
ATOM 20 N1 A A 119 116.116 69.355 -22.251 1.00 34.54 N
ATOM 21 C2 A A 119 115.246 68.349 -22.192 1.00 33.83 C
ATOM 22 N3 A A 119 113.975 68.307 -22.583 1.00 35.80 N
ATOM 23 C4 A A 119 113.592 69.488 -23.103 1.00 36.34 C
ATOM 24 P C A 120 107.529 66.932 -22.652 1.00 33.46 P
ATOM 25 OP1 C A 120 107.462 65.452 -22.727 1.00 32.14 O
ATOM 26 OP2 C A 120 106.300 67.737 -22.853 1.00 32.79 O
ATOM 27 O5' C A 120 108.195 67.337 -21.268 1.00 33.36 O
TER
ATOM 1 O3' A B 252 110.025 60.107 -19.951 1.00 33.85 O
ATOM 2 P A B 253 110.601 59.995 -21.439 1.00 35.86 P
ATOM 3 OP1 A B 253 109.513 59.710 -22.430 1.00 34.98 O
ATOM 4 OP2 A B 253 111.766 59.094 -21.340 1.00 38.34 O
ATOM 5 O5' A B 253 111.114 61.444 -21.734 1.00 35.29 O
ATOM 6 C5' A B 253 110.195 62.541 -21.833 1.00 34.22 C
ATOM 7 C4' A B 253 110.954 63.824 -22.025 1.00 32.71 C
ATOM 8 O4' A B 253 111.591 64.223 -20.786 1.00 33.29 O
ATOM 9 C3' A B 253 112.075 63.717 -23.036 1.00 30.80 C
ATOM 10 O3' A B 253 111.545 63.943 -24.312 1.00 30.14 O
ATOM 11 C2' A B 253 113.041 64.802 -22.587 1.00 31.24 C
ATOM 12 O2' A B 253 112.655 66.067 -23.063 1.00 31.79 O
ATOM 13 C1' A B 253 112.858 64.784 -21.068 1.00 32.40 C
ATOM 14 N9 A B 253 113.869 63.985 -20.379 1.00 34.04 N
ATOM 15 C8 A B 253 113.926 62.620 -20.258 1.00 34.80 C
ATOM 16 N7 A B 253 114.977 62.191 -19.606 1.00 33.80 N
ATOM 17 C5 A B 253 115.655 63.351 -19.273 1.00 32.29 C
ATOM 18 C6 A B 253 116.853 63.570 -18.611 1.00 31.41 C
ATOM 19 N6 A B 253 117.637 62.592 -18.164 1.00 29.73 N
ATOM 20 N1 A B 253 117.245 64.845 -18.429 1.00 33.89 N
ATOM 21 C2 A B 253 116.481 65.825 -18.909 1.00 33.98 C
ATOM 22 N3 A B 253 115.341 65.745 -19.575 1.00 35.10 N
ATOM 23 C4 A B 253 114.976 64.463 -19.727 1.00 33.66 C
ATOM 24 P U B 254 112.394 63.546 -25.611 1.00 31.63 P
ATOM 25 OP1 U B 254 111.447 63.361 -26.758 1.00 31.28 O
ATOM 26 OP2 U B 254 113.323 62.470 -25.227 1.00 31.36 O
ATOM 27 O5' U B 254 113.211 64.855 -25.925 1.00 32.40 O
TER
ATOM 2 P A A 119 108.731 72.418 -26.401 1.00 32.11 P
ATOM 3 OP1 A A 119 109.817 73.035 -27.174 1.00 29.81 O
ATOM 4 OP2 A A 119 107.492 72.029 -27.085 1.00 34.47 O
ATOM 5 O5' A A 119 109.323 71.109 -25.752 1.00 33.29 O
ATOM 6 C5' A A 119 109.117 69.835 -26.376 1.00 32.57 C
ATOM 7 C4' A A 119 109.531 68.732 -25.445 1.00 33.11 C
ATOM 8 O4' A A 119 110.957 68.832 -25.213 1.00 33.44 O
ATOM 9 C3' A A 119 108.863 68.728 -24.077 1.00 33.22 C
ATOM 10 O3' A A 119 108.662 67.350 -23.722 1.00 33.68 O
ATOM 11 C2' A A 119 109.907 69.407 -23.192 1.00 33.55 C
ATOM 12 O2' A A 119 109.857 69.034 -21.833 1.00 34.41 O
ATOM 13 C1' A A 119 111.212 68.931 -23.828 1.00 34.65 C
ATOM 14 N9 A A 119 112.367 69.816 -23.650 1.00 36.11 N
ATOM 15 C8 A A 119 112.471 71.130 -24.034 1.00 36.24 C
ATOM 16 N7 A A 119 113.651 71.654 -23.811 1.00 37.56 N
ATOM 17 C5 A A 119 114.373 70.621 -23.226 1.00 36.77 C
ATOM 18 C6 A A 119 115.705 70.534 -22.768 1.00 36.76 C
ATOM 19 N6 A A 119 116.573 71.555 -22.814 1.00 36.27 N
ATOM 20 N1 A A 119 116.116 69.355 -22.251 1.00 34.54 N
ATOM 21 C2 A A 119 115.246 68.349 -22.192 1.00 33.83 C
ATOM 22 N3 A A 119 113.975 68.307 -22.583 1.00 35.80 N
ATOM 23 C4 A A 119 113.592 69.488 -23.103 1.00 36.34 C
ATOM 24 P C A 120 107.529 66.932 -22.652 1.00 33.46 P
ATOM 25 OP1 C A 120 107.462 65.452 -22.727 1.00 32.14 O
ATOM 26 OP2 C A 120 106.300 67.737 -22.853 1.00 32.79 O
ATOM 27 O5' C A 120 108.195 67.337 -21.268 1.00 33.36 O
TER
ATOM 1 O3' A B 252 110.025 60.107 -19.951 1.00 33.85 O
ATOM 2 P A B 253 110.601 59.995 -21.439 1.00 35.86 P
ATOM 3 OP1 A B 253 109.513 59.710 -22.430 1.00 34.98 O
ATOM 4 OP2 A B 253 111.766 59.094 -21.340 1.00 38.34 O
ATOM 5 O5' A B 253 111.114 61.444 -21.734 1.00 35.29 O
ATOM 6 C5' A B 253 110.195 62.541 -21.833 1.00 34.22 C
ATOM 7 C4' A B 253 110.954 63.824 -22.025 1.00 32.71 C
ATOM 8 O4' A B 253 111.591 64.223 -20.786 1.00 33.29 O
ATOM 9 C3' A B 253 112.075 63.717 -23.036 1.00 30.80 C
ATOM 10 O3' A B 253 111.545 63.943 -24.312 1.00 30.14 O
ATOM 11 C2' A B 253 113.041 64.802 -22.587 1.00 31.24 C
ATOM 12 O2' A B 253 112.655 66.067 -23.063 1.00 31.79 O
ATOM 13 C1' A B 253 112.858 64.784 -21.068 1.00 32.40 C
ATOM 14 N9 A B 253 113.869 63.985 -20.379 1.00 34.04 N
ATOM 15 C8 A B 253 113.926 62.620 -20.258 1.00 34.80 C
ATOM 16 N7 A B 253 114.977 62.191 -19.606 1.00 33.80 N
ATOM 17 C5 A B 253 115.655 63.351 -19.273 1.00 32.29 C
ATOM 18 C6 A B 253 116.853 63.570 -18.611 1.00 31.41 C
ATOM 19 N6 A B 253 117.637 62.592 -18.164 1.00 29.73 N
ATOM 20 N1 A B 253 117.245 64.845 -18.429 1.00 33.89 N
ATOM 21 C2 A B 253 116.481 65.825 -18.909 1.00 33.98 C
ATOM 22 N3 A B 253 115.341 65.745 -19.575 1.00 35.10 N
ATOM 23 C4 A B 253 114.976 64.463 -19.727 1.00 33.66 C
ATOM 24 P U B 254 112.394 63.546 -25.611 1.00 31.63 P
ATOM 25 OP1 U B 254 111.447 63.361 -26.758 1.00 31.28 O
ATOM 26 OP2 U B 254 113.323 62.470 -25.227 1.00 31.36 O
ATOM 27 O5' U B 254 113.211 64.855 -25.925 1.00 32.40 O
TER
Atoms:
OP1: (109.817,73.035,-27.174)
OP2: (107.492,72.029,-27.085)
C3': (108.863,68.728,-24.077)
C1': (111.212,68.931,-23.828)
C5': (109.117,69.835,-26.376)
O4': (110.957,68.832,-25.213)
C8: (112.471,71.130,-24.034)
O2': (109.857,69.034,-21.833)
C6: (115.705,70.534,-22.768)
C5: (114.373,70.621,-23.226)
C4: (113.592,69.488,-23.103)
P: (108.731,72.418,-26.401)
C4': (109.531,68.732,-25.445)
C2': (109.907,69.407,-23.192)
C2: (115.246,68.349,-22.192)
N1: (116.116,69.355,-22.251)
N3: (113.975,68.307,-22.583)
N6: (116.573,71.555,-22.814)
N7: (113.651,71.654,-23.811)
N9: (112.367,69.816,-23.650)
O5': (109.323,71.109,-25.752)
O3': (108.662,67.350,-23.722)
OP2: (107.492,72.029,-27.085)
C3': (108.863,68.728,-24.077)
C1': (111.212,68.931,-23.828)
C5': (109.117,69.835,-26.376)
O4': (110.957,68.832,-25.213)
C8: (112.471,71.130,-24.034)
O2': (109.857,69.034,-21.833)
C6: (115.705,70.534,-22.768)
C5: (114.373,70.621,-23.226)
C4: (113.592,69.488,-23.103)
P: (108.731,72.418,-26.401)
C4': (109.531,68.732,-25.445)
C2': (109.907,69.407,-23.192)
C2: (115.246,68.349,-22.192)
N1: (116.116,69.355,-22.251)
N3: (113.975,68.307,-22.583)
N6: (116.573,71.555,-22.814)
N7: (113.651,71.654,-23.811)
N9: (112.367,69.816,-23.650)
O5': (109.323,71.109,-25.752)
O3': (108.662,67.350,-23.722)
OP1: (109.513,59.710,-22.430)
OP2: (111.766,59.094,-21.340)
C3': (112.075,63.717,-23.036)
C1': (112.858,64.784,-21.068)
C5': (110.195,62.541,-21.833)
O4': (111.591,64.223,-20.786)
C8: (113.926,62.620,-20.258)
O2': (112.655,66.067,-23.063)
C6: (116.853,63.570,-18.611)
C5: (115.655,63.351,-19.273)
C4: (114.976,64.463,-19.727)
P: (110.601,59.995,-21.439)
C4': (110.954,63.824,-22.025)
C2': (113.041,64.802,-22.587)
C2: (116.481,65.825,-18.909)
N1: (117.245,64.845,-18.429)
N3: (115.341,65.745,-19.575)
N6: (117.637,62.592,-18.164)
N7: (114.977,62.191,-19.606)
N9: (113.869,63.985,-20.379)
O5': (111.114,61.444,-21.734)
O3': (111.545,63.943,-24.312)
OP2: (111.766,59.094,-21.340)
C3': (112.075,63.717,-23.036)
C1': (112.858,64.784,-21.068)
C5': (110.195,62.541,-21.833)
O4': (111.591,64.223,-20.786)
C8: (113.926,62.620,-20.258)
O2': (112.655,66.067,-23.063)
C6: (116.853,63.570,-18.611)
C5: (115.655,63.351,-19.273)
C4: (114.976,64.463,-19.727)
P: (110.601,59.995,-21.439)
C4': (110.954,63.824,-22.025)
C2': (113.041,64.802,-22.587)
C2: (116.481,65.825,-18.909)
N1: (117.245,64.845,-18.429)
N3: (115.341,65.745,-19.575)
N6: (117.637,62.592,-18.164)
N7: (114.977,62.191,-19.606)
N9: (113.869,63.985,-20.379)
O5': (111.114,61.444,-21.734)
O3': (111.545,63.943,-24.312)
Image (generated by PyMOL):