ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2VQF:A119:A253

Extra

PDB:
ATOM 1 O3' G A 118 108.565 73.652 -25.006 1.00 65.83 O
ATOM 2 P A A 119 109.019 72.728 -26.260 1.00 63.94 P
ATOM 3 OP1 A A 119 110.171 73.390 -26.875 1.00 63.39 O
ATOM 4 OP2 A A 119 107.878 72.366 -27.093 1.00 63.35 O
ATOM 5 O5' A A 119 109.530 71.389 -25.583 1.00 65.19 O
ATOM 6 C5' A A 119 109.232 70.114 -26.177 1.00 64.69 C
ATOM 7 C4' A A 119 109.674 68.994 -25.273 1.00 65.16 C
ATOM 8 O4' A A 119 111.116 69.060 -25.101 1.00 65.29 O
ATOM 9 C3' A A 119 109.064 68.971 -23.876 1.00 65.32 C
ATOM 10 O3' A A 119 108.846 67.593 -23.557 1.00 64.52 O
ATOM 11 C2' A A 119 110.163 69.607 -23.017 1.00 66.67 C
ATOM 12 O2' A A 119 110.209 69.241 -21.648 1.00 67.90 O
ATOM 13 C1' A A 119 111.429 69.129 -23.724 1.00 66.81 C
ATOM 14 N9 A A 119 112.579 70.022 -23.560 1.00 67.53 N
ATOM 15 C8 A A 119 112.706 71.315 -24.001 1.00 67.71 C
ATOM 16 N7 A A 119 113.887 71.835 -23.776 1.00 68.38 N
ATOM 17 C5 A A 119 114.580 70.822 -23.131 1.00 67.15 C
ATOM 18 C6 A A 119 115.895 70.739 -22.651 1.00 67.50 C
ATOM 19 N6 A A 119 116.775 71.736 -22.741 1.00 67.72 N
ATOM 20 N1 A A 119 116.280 69.583 -22.064 1.00 67.86 N
ATOM 21 C2 A A 119 115.388 68.594 -21.958 1.00 66.86 C
ATOM 22 N3 A A 119 114.123 68.556 -22.367 1.00 67.87 N
ATOM 23 C4 A A 119 113.779 69.711 -22.963 1.00 67.21 C
ATOM 24 P C A 120 107.738 67.168 -22.472 1.00 64.08 P
ATOM 25 OP1 C A 120 107.787 65.684 -22.448 1.00 63.20 O
ATOM 26 OP2 C A 120 106.458 67.861 -22.748 1.00 63.81 O
ATOM 27 O5' C A 120 108.342 67.700 -21.087 1.00 63.45 O
TER

ATOM 1 O3' A B 252 110.169 60.360 -19.827 1.00 67.54 O
ATOM 2 P A B 253 110.716 60.216 -21.326 1.00 69.40 P
ATOM 3 OP1 A B 253 109.563 59.983 -22.252 1.00 69.78 O
ATOM 4 OP2 A B 253 111.850 59.267 -21.302 1.00 69.63 O
ATOM 5 O5' A B 253 111.264 61.651 -21.638 1.00 68.13 O
ATOM 6 C5' A B 253 110.370 62.770 -21.717 1.00 65.95 C
ATOM 7 C4' A B 253 111.156 64.042 -21.882 1.00 63.81 C
ATOM 8 O4' A B 253 111.788 64.407 -20.631 1.00 63.43 O
ATOM 9 C3' A B 253 112.283 63.959 -22.892 1.00 62.07 C
ATOM 10 O3' A B 253 111.762 64.207 -24.187 1.00 62.23 O
ATOM 11 C2' A B 253 113.235 65.044 -22.408 1.00 61.04 C
ATOM 12 O2' A B 253 112.811 66.315 -22.831 1.00 62.00 O
ATOM 13 C1' A B 253 113.053 64.979 -20.889 1.00 61.31 C
ATOM 14 N9 A B 253 114.067 64.162 -20.224 1.00 60.79 N
ATOM 15 C8 A B 253 114.140 62.795 -20.188 1.00 61.57 C
ATOM 16 N7 A B 253 115.205 62.339 -19.578 1.00 60.03 N
ATOM 17 C5 A B 253 115.867 63.483 -19.173 1.00 57.53 C
ATOM 18 C6 A B 253 117.067 63.673 -18.509 1.00 56.45 C
ATOM 19 N6 A B 253 117.863 62.679 -18.132 1.00 55.79 N
ATOM 20 N1 A B 253 117.444 64.936 -18.245 1.00 57.02 N
ATOM 21 C2 A B 253 116.663 65.934 -18.644 1.00 57.16 C
ATOM 22 N3 A B 253 115.515 65.884 -19.297 1.00 60.18 N
ATOM 23 C4 A B 253 115.167 64.611 -19.538 1.00 59.14 C
ATOM 24 P U B 254 112.596 63.770 -25.487 1.00 64.11 P
ATOM 25 OP1 U B 254 111.631 63.563 -26.607 1.00 62.50 O
ATOM 26 OP2 U B 254 113.512 62.681 -25.083 1.00 64.57 O
ATOM 27 O5' U B 254 113.458 65.068 -25.847 1.00 64.84 O
TER

Atoms:
OP1: (110.171,73.390,-26.875)
OP2: (107.878,72.366,-27.093)
C3': (109.064,68.971,-23.876)
C1': (111.429,69.129,-23.724)
C5': (109.232,70.114,-26.177)
O4': (111.116,69.060,-25.101)
C8: (112.706,71.315,-24.001)
O2': (110.209,69.241,-21.648)
C6: (115.895,70.739,-22.651)
C5: (114.580,70.822,-23.131)
C4: (113.779,69.711,-22.963)
P: (109.019,72.728,-26.260)
C4': (109.674,68.994,-25.273)
C2': (110.163,69.607,-23.017)
C2: (115.388,68.594,-21.958)
N1: (116.280,69.583,-22.064)
N3: (114.123,68.556,-22.367)
N6: (116.775,71.736,-22.741)
N7: (113.887,71.835,-23.776)
N9: (112.579,70.022,-23.560)
O5': (109.530,71.389,-25.583)
O3': (108.846,67.593,-23.557)
OP1: (109.563,59.983,-22.252)
OP2: (111.850,59.267,-21.302)
C3': (112.283,63.959,-22.892)
C1': (113.053,64.979,-20.889)
C5': (110.370,62.770,-21.717)
O4': (111.788,64.407,-20.631)
C8: (114.140,62.795,-20.188)
O2': (112.811,66.315,-22.831)
C6: (117.067,63.673,-18.509)
C5: (115.867,63.483,-19.173)
C4: (115.167,64.611,-19.538)
P: (110.716,60.216,-21.326)
C4': (111.156,64.042,-21.882)
C2': (113.235,65.044,-22.408)
C2: (116.663,65.934,-18.644)
N1: (117.444,64.936,-18.245)
N3: (115.515,65.884,-19.297)
N6: (117.863,62.679,-18.132)
N7: (115.205,62.339,-19.578)
N9: (114.067,64.162,-20.224)
O5': (111.264,61.651,-21.638)
O3': (111.762,64.207,-24.187)
Image (generated by PyMOL):
PyMOL image
show in jmol