Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:D18:D22
Extra
PDB:
ATOM 1 O3' G A 17 11.983 4.316 -51.541 1.00 51.81 O
ATOM 2 P A A 18 10.544 3.760 -51.086 1.00 58.87 P
ATOM 3 OP1 A A 18 9.831 4.880 -50.425 1.00 66.50 O
ATOM 4 OP2 A A 18 10.781 2.515 -50.318 1.00 60.78 O
ATOM 5 O5' A A 18 9.844 3.416 -52.475 1.00 55.57 O
ATOM 6 C5' A A 18 9.714 4.404 -53.485 1.00 52.31 C
ATOM 7 C4' A A 18 8.921 3.898 -54.663 1.00 51.45 C
ATOM 8 O4' A A 18 9.738 3.015 -55.472 1.00 55.76 O
ATOM 9 C3' A A 18 7.700 3.058 -54.339 1.00 52.31 C
ATOM 10 O3' A A 18 6.587 3.834 -53.932 1.00 51.02 O
ATOM 11 C2' A A 18 7.474 2.298 -55.640 1.00 54.82 C
ATOM 12 O2' A A 18 6.823 3.122 -56.595 1.00 53.29 O
ATOM 13 C1' A A 18 8.911 2.060 -56.109 1.00 52.07 C
ATOM 14 N9 A A 18 9.388 0.706 -55.772 1.00 46.53 N
ATOM 15 C8 A A 18 10.270 0.307 -54.800 1.00 51.19 C
ATOM 16 N7 A A 18 10.473 -0.991 -54.780 1.00 56.05 N
ATOM 17 C5 A A 18 9.673 -1.476 -55.807 1.00 49.77 C
ATOM 18 C6 A A 18 9.434 -2.771 -56.307 1.00 44.36 C
ATOM 19 N6 A A 18 10.000 -3.879 -55.826 1.00 38.24 N
ATOM 20 N1 A A 18 8.576 -2.893 -57.343 1.00 39.68 N
ATOM 21 C2 A A 18 7.998 -1.794 -57.839 1.00 42.16 C
ATOM 22 N3 A A 18 8.143 -0.530 -57.455 1.00 47.30 N
ATOM 23 C4 A A 18 9.003 -0.439 -56.426 1.00 45.90 C
ATOM 24 P U A 19 5.497 3.218 -52.924 1.00 49.63 P
ATOM 25 OP1 U A 19 4.493 4.279 -52.664 1.00 52.10 O
ATOM 26 OP2 U A 19 6.238 2.643 -51.776 1.00 51.72 O
ATOM 27 O5' U A 19 4.843 2.050 -53.784 1.00 50.20 O
TER
ATOM 1 O3' U B 21 1.401 4.643 -63.153 1.00 52.39 O
ATOM 2 P A B 22 2.815 5.234 -62.660 1.00 55.71 P
ATOM 3 OP1 A B 22 2.559 6.599 -62.140 1.00 59.59 O
ATOM 4 OP2 A B 22 3.768 5.072 -63.781 1.00 53.92 O
ATOM 5 O5' A B 22 3.223 4.266 -61.462 1.00 50.09 O
ATOM 6 C5' A B 22 4.111 4.710 -60.445 1.00 47.25 C
ATOM 7 C4' A B 22 4.912 3.572 -59.858 1.00 44.72 C
ATOM 8 O4' A B 22 4.022 2.529 -59.385 1.00 47.01 O
ATOM 9 C3' A B 22 5.854 2.846 -60.807 1.00 46.13 C
ATOM 10 O3' A B 22 7.072 3.541 -61.014 1.00 47.30 O
ATOM 11 C2' A B 22 6.034 1.497 -60.124 1.00 44.75 C
ATOM 12 O2' A B 22 6.969 1.595 -59.061 1.00 44.98 O
ATOM 13 C1' A B 22 4.645 1.269 -59.525 1.00 46.26 C
ATOM 14 N9 A B 22 3.804 0.418 -60.386 1.00 43.21 N
ATOM 15 C8 A B 22 3.074 0.776 -61.492 1.00 43.56 C
ATOM 16 N7 A B 22 2.427 -0.225 -62.040 1.00 43.84 N
ATOM 17 C5 A B 22 2.754 -1.311 -61.239 1.00 41.72 C
ATOM 18 C6 A B 22 2.389 -2.668 -61.286 1.00 42.96 C
ATOM 19 N6 A B 22 1.580 -3.188 -62.211 1.00 41.72 N
ATOM 20 N1 A B 22 2.891 -3.486 -60.336 1.00 41.27 N
ATOM 21 C2 A B 22 3.702 -2.967 -59.405 1.00 33.25 C
ATOM 22 N3 A B 22 4.115 -1.713 -59.255 1.00 35.53 N
ATOM 23 C4 A B 22 3.599 -0.928 -60.215 1.00 39.75 C
ATOM 24 P G B 23 7.988 3.211 -62.293 1.00 43.02 P
ATOM 25 OP1 G B 23 9.182 4.087 -62.214 1.00 57.79 O
ATOM 26 OP2 G B 23 7.116 3.303 -63.488 1.00 44.20 O
ATOM 27 O5' G B 23 8.411 1.695 -62.048 1.00 48.58 O
TER
ATOM 2 P A A 18 10.544 3.760 -51.086 1.00 58.87 P
ATOM 3 OP1 A A 18 9.831 4.880 -50.425 1.00 66.50 O
ATOM 4 OP2 A A 18 10.781 2.515 -50.318 1.00 60.78 O
ATOM 5 O5' A A 18 9.844 3.416 -52.475 1.00 55.57 O
ATOM 6 C5' A A 18 9.714 4.404 -53.485 1.00 52.31 C
ATOM 7 C4' A A 18 8.921 3.898 -54.663 1.00 51.45 C
ATOM 8 O4' A A 18 9.738 3.015 -55.472 1.00 55.76 O
ATOM 9 C3' A A 18 7.700 3.058 -54.339 1.00 52.31 C
ATOM 10 O3' A A 18 6.587 3.834 -53.932 1.00 51.02 O
ATOM 11 C2' A A 18 7.474 2.298 -55.640 1.00 54.82 C
ATOM 12 O2' A A 18 6.823 3.122 -56.595 1.00 53.29 O
ATOM 13 C1' A A 18 8.911 2.060 -56.109 1.00 52.07 C
ATOM 14 N9 A A 18 9.388 0.706 -55.772 1.00 46.53 N
ATOM 15 C8 A A 18 10.270 0.307 -54.800 1.00 51.19 C
ATOM 16 N7 A A 18 10.473 -0.991 -54.780 1.00 56.05 N
ATOM 17 C5 A A 18 9.673 -1.476 -55.807 1.00 49.77 C
ATOM 18 C6 A A 18 9.434 -2.771 -56.307 1.00 44.36 C
ATOM 19 N6 A A 18 10.000 -3.879 -55.826 1.00 38.24 N
ATOM 20 N1 A A 18 8.576 -2.893 -57.343 1.00 39.68 N
ATOM 21 C2 A A 18 7.998 -1.794 -57.839 1.00 42.16 C
ATOM 22 N3 A A 18 8.143 -0.530 -57.455 1.00 47.30 N
ATOM 23 C4 A A 18 9.003 -0.439 -56.426 1.00 45.90 C
ATOM 24 P U A 19 5.497 3.218 -52.924 1.00 49.63 P
ATOM 25 OP1 U A 19 4.493 4.279 -52.664 1.00 52.10 O
ATOM 26 OP2 U A 19 6.238 2.643 -51.776 1.00 51.72 O
ATOM 27 O5' U A 19 4.843 2.050 -53.784 1.00 50.20 O
TER
ATOM 1 O3' U B 21 1.401 4.643 -63.153 1.00 52.39 O
ATOM 2 P A B 22 2.815 5.234 -62.660 1.00 55.71 P
ATOM 3 OP1 A B 22 2.559 6.599 -62.140 1.00 59.59 O
ATOM 4 OP2 A B 22 3.768 5.072 -63.781 1.00 53.92 O
ATOM 5 O5' A B 22 3.223 4.266 -61.462 1.00 50.09 O
ATOM 6 C5' A B 22 4.111 4.710 -60.445 1.00 47.25 C
ATOM 7 C4' A B 22 4.912 3.572 -59.858 1.00 44.72 C
ATOM 8 O4' A B 22 4.022 2.529 -59.385 1.00 47.01 O
ATOM 9 C3' A B 22 5.854 2.846 -60.807 1.00 46.13 C
ATOM 10 O3' A B 22 7.072 3.541 -61.014 1.00 47.30 O
ATOM 11 C2' A B 22 6.034 1.497 -60.124 1.00 44.75 C
ATOM 12 O2' A B 22 6.969 1.595 -59.061 1.00 44.98 O
ATOM 13 C1' A B 22 4.645 1.269 -59.525 1.00 46.26 C
ATOM 14 N9 A B 22 3.804 0.418 -60.386 1.00 43.21 N
ATOM 15 C8 A B 22 3.074 0.776 -61.492 1.00 43.56 C
ATOM 16 N7 A B 22 2.427 -0.225 -62.040 1.00 43.84 N
ATOM 17 C5 A B 22 2.754 -1.311 -61.239 1.00 41.72 C
ATOM 18 C6 A B 22 2.389 -2.668 -61.286 1.00 42.96 C
ATOM 19 N6 A B 22 1.580 -3.188 -62.211 1.00 41.72 N
ATOM 20 N1 A B 22 2.891 -3.486 -60.336 1.00 41.27 N
ATOM 21 C2 A B 22 3.702 -2.967 -59.405 1.00 33.25 C
ATOM 22 N3 A B 22 4.115 -1.713 -59.255 1.00 35.53 N
ATOM 23 C4 A B 22 3.599 -0.928 -60.215 1.00 39.75 C
ATOM 24 P G B 23 7.988 3.211 -62.293 1.00 43.02 P
ATOM 25 OP1 G B 23 9.182 4.087 -62.214 1.00 57.79 O
ATOM 26 OP2 G B 23 7.116 3.303 -63.488 1.00 44.20 O
ATOM 27 O5' G B 23 8.411 1.695 -62.048 1.00 48.58 O
TER
Atoms:
OP1: (9.831,4.880,-50.425)
OP2: (10.781,2.515,-50.318)
C3': (7.700,3.058,-54.339)
C1': (8.911,2.060,-56.109)
C5': (9.714,4.404,-53.485)
O4': (9.738,3.015,-55.472)
C8: (10.270,0.307,-54.800)
O2': (6.823,3.122,-56.595)
C6: (9.434,-2.771,-56.307)
C5: (9.673,-1.476,-55.807)
C4: (9.003,-0.439,-56.426)
P: (10.544,3.760,-51.086)
C4': (8.921,3.898,-54.663)
C2': (7.474,2.298,-55.640)
C2: (7.998,-1.794,-57.839)
N1: (8.576,-2.893,-57.343)
N3: (8.143,-0.530,-57.455)
N6: (10.000,-3.879,-55.826)
N7: (10.473,-0.991,-54.780)
N9: (9.388,0.706,-55.772)
O5': (9.844,3.416,-52.475)
O3': (6.587,3.834,-53.932)
OP2: (10.781,2.515,-50.318)
C3': (7.700,3.058,-54.339)
C1': (8.911,2.060,-56.109)
C5': (9.714,4.404,-53.485)
O4': (9.738,3.015,-55.472)
C8: (10.270,0.307,-54.800)
O2': (6.823,3.122,-56.595)
C6: (9.434,-2.771,-56.307)
C5: (9.673,-1.476,-55.807)
C4: (9.003,-0.439,-56.426)
P: (10.544,3.760,-51.086)
C4': (8.921,3.898,-54.663)
C2': (7.474,2.298,-55.640)
C2: (7.998,-1.794,-57.839)
N1: (8.576,-2.893,-57.343)
N3: (8.143,-0.530,-57.455)
N6: (10.000,-3.879,-55.826)
N7: (10.473,-0.991,-54.780)
N9: (9.388,0.706,-55.772)
O5': (9.844,3.416,-52.475)
O3': (6.587,3.834,-53.932)
OP1: (2.559,6.599,-62.140)
OP2: (3.768,5.072,-63.781)
C3': (5.854,2.846,-60.807)
C1': (4.645,1.269,-59.525)
C5': (4.111,4.710,-60.445)
O4': (4.022,2.529,-59.385)
C8: (3.074,0.776,-61.492)
O2': (6.969,1.595,-59.061)
C6: (2.389,-2.668,-61.286)
C5: (2.754,-1.311,-61.239)
C4: (3.599,-0.928,-60.215)
P: (2.815,5.234,-62.660)
C4': (4.912,3.572,-59.858)
C2': (6.034,1.497,-60.124)
C2: (3.702,-2.967,-59.405)
N1: (2.891,-3.486,-60.336)
N3: (4.115,-1.713,-59.255)
N6: (1.580,-3.188,-62.211)
N7: (2.427,-0.225,-62.040)
N9: (3.804,0.418,-60.386)
O5': (3.223,4.266,-61.462)
O3': (7.072,3.541,-61.014)
OP2: (3.768,5.072,-63.781)
C3': (5.854,2.846,-60.807)
C1': (4.645,1.269,-59.525)
C5': (4.111,4.710,-60.445)
O4': (4.022,2.529,-59.385)
C8: (3.074,0.776,-61.492)
O2': (6.969,1.595,-59.061)
C6: (2.389,-2.668,-61.286)
C5: (2.754,-1.311,-61.239)
C4: (3.599,-0.928,-60.215)
P: (2.815,5.234,-62.660)
C4': (4.912,3.572,-59.858)
C2': (6.034,1.497,-60.124)
C2: (3.702,-2.967,-59.405)
N1: (2.891,-3.486,-60.336)
N3: (4.115,-1.713,-59.255)
N6: (1.580,-3.188,-62.211)
N7: (2.427,-0.225,-62.040)
N9: (3.804,0.418,-60.386)
O5': (3.223,4.266,-61.462)
O3': (7.072,3.541,-61.014)
Image (generated by PyMOL):