Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12020:12353
Extra
PDB:
ATOM 1 O3' C A2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 2 P A A2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 3 OP1 A A2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 4 OP2 A A2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 5 O5' A A2020 11.883 -45.370 104.024 1.00 63.39 O
ATOM 6 C5' A A2020 13.146 -44.857 103.644 1.00 63.08 C
ATOM 7 C4' A A2020 13.686 -43.909 104.651 1.00 63.06 C
ATOM 8 O4' A A2020 12.640 -43.096 105.208 1.00 63.12 O
ATOM 9 C3' A A2020 14.306 -44.517 105.876 1.00 63.39 C
ATOM 10 O3' A A2020 15.543 -45.109 105.601 1.00 63.35 O
ATOM 11 C2' A A2020 14.425 -43.304 106.759 1.00 63.34 C
ATOM 12 O2' A A2020 15.486 -42.494 106.288 1.00 62.99 O
ATOM 13 C1' A A2020 13.115 -42.581 106.438 1.00 63.25 C
ATOM 14 N9 A A2020 12.095 -42.741 107.494 1.00 63.62 N
ATOM 15 C8 A A2020 10.999 -43.507 107.600 1.00 63.89 C
ATOM 16 N7 A A2020 10.353 -43.299 108.717 1.00 64.18 N
ATOM 17 C5 A A2020 11.051 -42.342 109.373 1.00 64.09 C
ATOM 18 C6 A A2020 10.883 -41.706 110.590 1.00 64.29 C
ATOM 19 N6 A A2020 9.904 -41.894 111.464 1.00 64.64 N
ATOM 20 N1 A A2020 11.806 -40.803 110.918 1.00 64.12 N
ATOM 21 C2 A A2020 12.802 -40.556 110.075 1.00 63.77 C
ATOM 22 N3 A A2020 13.054 -41.092 108.909 1.00 63.56 N
ATOM 23 C4 A A2020 12.122 -41.992 108.625 1.00 63.74 C
ATOM 24 P A A2021 15.853 -46.575 106.125 1.00 51.92 P
ATOM 25 OP1 A A2021 16.880 -47.140 105.245 1.00 51.77 O
ATOM 26 OP2 A A2021 14.591 -47.267 106.227 1.00 52.19 O
ATOM 27 O5' A A2021 16.452 -46.301 107.575 1.00 52.15 O
TER
ATOM 1 O3' C B2352 22.469 -39.118 110.029 1.00 49.71 O
ATOM 2 P A B2353 21.776 -38.663 108.672 1.00 53.05 P
ATOM 3 OP1 A B2353 22.388 -39.452 107.566 1.00 52.89 O
ATOM 4 OP2 A B2353 21.852 -37.207 108.627 1.00 52.80 O
ATOM 5 O5' A B2353 20.284 -39.119 108.905 1.00 53.27 O
ATOM 6 C5' A B2353 19.894 -40.457 108.676 1.00 53.47 C
ATOM 7 C4' A B2353 18.394 -40.586 108.691 1.00 53.59 C
ATOM 8 O4' A B2353 17.899 -40.238 110.012 1.00 53.89 O
ATOM 9 C3' A B2353 17.640 -39.642 107.769 1.00 53.26 C
ATOM 10 O3' A B2353 17.588 -40.098 106.449 1.00 53.03 O
ATOM 11 C2' A B2353 16.287 -39.563 108.433 1.00 53.50 C
ATOM 12 O2' A B2353 15.566 -40.752 108.214 1.00 53.71 O
ATOM 13 C1' A B2353 16.684 -39.536 109.895 1.00 53.83 C
ATOM 14 N9 A B2353 16.885 -38.170 110.347 1.00 53.70 N
ATOM 15 C8 A B2353 17.995 -37.390 110.369 1.00 53.51 C
ATOM 16 N7 A B2353 17.733 -36.172 110.779 1.00 53.45 N
ATOM 17 C5 A B2353 16.364 -36.188 111.020 1.00 53.61 C
ATOM 18 C6 A B2353 15.420 -35.251 111.473 1.00 53.67 C
ATOM 19 N6 A B2353 15.681 -34.006 111.813 1.00 53.57 N
ATOM 20 N1 A B2353 14.137 -35.641 111.573 1.00 53.86 N
ATOM 21 C2 A B2353 13.798 -36.875 111.228 1.00 53.98 C
ATOM 22 N3 A B2353 14.599 -37.826 110.809 1.00 53.95 N
ATOM 23 C4 A B2353 15.853 -37.419 110.736 1.00 53.76 C
ATOM 24 P G B2354 17.683 -39.071 105.230 1.00 50.86 P
ATOM 25 OP1 G B2354 18.202 -39.824 104.078 1.00 50.69 O
ATOM 26 OP2 G B2354 18.431 -37.872 105.698 1.00 50.71 O
ATOM 27 O5' G B2354 16.186 -38.687 104.983 1.00 50.85 O
TER
ATOM 2 P A A2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 3 OP1 A A2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 4 OP2 A A2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 5 O5' A A2020 11.883 -45.370 104.024 1.00 63.39 O
ATOM 6 C5' A A2020 13.146 -44.857 103.644 1.00 63.08 C
ATOM 7 C4' A A2020 13.686 -43.909 104.651 1.00 63.06 C
ATOM 8 O4' A A2020 12.640 -43.096 105.208 1.00 63.12 O
ATOM 9 C3' A A2020 14.306 -44.517 105.876 1.00 63.39 C
ATOM 10 O3' A A2020 15.543 -45.109 105.601 1.00 63.35 O
ATOM 11 C2' A A2020 14.425 -43.304 106.759 1.00 63.34 C
ATOM 12 O2' A A2020 15.486 -42.494 106.288 1.00 62.99 O
ATOM 13 C1' A A2020 13.115 -42.581 106.438 1.00 63.25 C
ATOM 14 N9 A A2020 12.095 -42.741 107.494 1.00 63.62 N
ATOM 15 C8 A A2020 10.999 -43.507 107.600 1.00 63.89 C
ATOM 16 N7 A A2020 10.353 -43.299 108.717 1.00 64.18 N
ATOM 17 C5 A A2020 11.051 -42.342 109.373 1.00 64.09 C
ATOM 18 C6 A A2020 10.883 -41.706 110.590 1.00 64.29 C
ATOM 19 N6 A A2020 9.904 -41.894 111.464 1.00 64.64 N
ATOM 20 N1 A A2020 11.806 -40.803 110.918 1.00 64.12 N
ATOM 21 C2 A A2020 12.802 -40.556 110.075 1.00 63.77 C
ATOM 22 N3 A A2020 13.054 -41.092 108.909 1.00 63.56 N
ATOM 23 C4 A A2020 12.122 -41.992 108.625 1.00 63.74 C
ATOM 24 P A A2021 15.853 -46.575 106.125 1.00 51.92 P
ATOM 25 OP1 A A2021 16.880 -47.140 105.245 1.00 51.77 O
ATOM 26 OP2 A A2021 14.591 -47.267 106.227 1.00 52.19 O
ATOM 27 O5' A A2021 16.452 -46.301 107.575 1.00 52.15 O
TER
ATOM 1 O3' C B2352 22.469 -39.118 110.029 1.00 49.71 O
ATOM 2 P A B2353 21.776 -38.663 108.672 1.00 53.05 P
ATOM 3 OP1 A B2353 22.388 -39.452 107.566 1.00 52.89 O
ATOM 4 OP2 A B2353 21.852 -37.207 108.627 1.00 52.80 O
ATOM 5 O5' A B2353 20.284 -39.119 108.905 1.00 53.27 O
ATOM 6 C5' A B2353 19.894 -40.457 108.676 1.00 53.47 C
ATOM 7 C4' A B2353 18.394 -40.586 108.691 1.00 53.59 C
ATOM 8 O4' A B2353 17.899 -40.238 110.012 1.00 53.89 O
ATOM 9 C3' A B2353 17.640 -39.642 107.769 1.00 53.26 C
ATOM 10 O3' A B2353 17.588 -40.098 106.449 1.00 53.03 O
ATOM 11 C2' A B2353 16.287 -39.563 108.433 1.00 53.50 C
ATOM 12 O2' A B2353 15.566 -40.752 108.214 1.00 53.71 O
ATOM 13 C1' A B2353 16.684 -39.536 109.895 1.00 53.83 C
ATOM 14 N9 A B2353 16.885 -38.170 110.347 1.00 53.70 N
ATOM 15 C8 A B2353 17.995 -37.390 110.369 1.00 53.51 C
ATOM 16 N7 A B2353 17.733 -36.172 110.779 1.00 53.45 N
ATOM 17 C5 A B2353 16.364 -36.188 111.020 1.00 53.61 C
ATOM 18 C6 A B2353 15.420 -35.251 111.473 1.00 53.67 C
ATOM 19 N6 A B2353 15.681 -34.006 111.813 1.00 53.57 N
ATOM 20 N1 A B2353 14.137 -35.641 111.573 1.00 53.86 N
ATOM 21 C2 A B2353 13.798 -36.875 111.228 1.00 53.98 C
ATOM 22 N3 A B2353 14.599 -37.826 110.809 1.00 53.95 N
ATOM 23 C4 A B2353 15.853 -37.419 110.736 1.00 53.76 C
ATOM 24 P G B2354 17.683 -39.071 105.230 1.00 50.86 P
ATOM 25 OP1 G B2354 18.202 -39.824 104.078 1.00 50.69 O
ATOM 26 OP2 G B2354 18.431 -37.872 105.698 1.00 50.71 O
ATOM 27 O5' G B2354 16.186 -38.687 104.983 1.00 50.85 O
TER
Atoms:
OP1: (11.669,-46.217,101.651)
OP2: (9.991,-46.949,103.489)
C3': (14.306,-44.517,105.876)
C1': (13.115,-42.581,106.438)
C5': (13.146,-44.857,103.644)
O4': (12.640,-43.096,105.208)
C8: (10.999,-43.507,107.600)
O2': (15.486,-42.494,106.288)
C6: (10.883,-41.706,110.590)
C5: (11.051,-42.342,109.373)
C4: (12.122,-41.992,108.625)
P: (10.896,-45.909,102.906)
C4': (13.686,-43.909,104.651)
C2': (14.425,-43.304,106.759)
C2: (12.802,-40.556,110.075)
N1: (11.806,-40.803,110.918)
N3: (13.054,-41.092,108.909)
N6: (9.904,-41.894,111.464)
N7: (10.353,-43.299,108.717)
N9: (12.095,-42.741,107.494)
O5': (11.883,-45.370,104.024)
O3': (15.543,-45.109,105.601)
OP2: (9.991,-46.949,103.489)
C3': (14.306,-44.517,105.876)
C1': (13.115,-42.581,106.438)
C5': (13.146,-44.857,103.644)
O4': (12.640,-43.096,105.208)
C8: (10.999,-43.507,107.600)
O2': (15.486,-42.494,106.288)
C6: (10.883,-41.706,110.590)
C5: (11.051,-42.342,109.373)
C4: (12.122,-41.992,108.625)
P: (10.896,-45.909,102.906)
C4': (13.686,-43.909,104.651)
C2': (14.425,-43.304,106.759)
C2: (12.802,-40.556,110.075)
N1: (11.806,-40.803,110.918)
N3: (13.054,-41.092,108.909)
N6: (9.904,-41.894,111.464)
N7: (10.353,-43.299,108.717)
N9: (12.095,-42.741,107.494)
O5': (11.883,-45.370,104.024)
O3': (15.543,-45.109,105.601)
OP1: (22.388,-39.452,107.566)
OP2: (21.852,-37.207,108.627)
C3': (17.640,-39.642,107.769)
C1': (16.684,-39.536,109.895)
C5': (19.894,-40.457,108.676)
O4': (17.899,-40.238,110.012)
C8: (17.995,-37.390,110.369)
O2': (15.566,-40.752,108.214)
C6: (15.420,-35.251,111.473)
C5: (16.364,-36.188,111.020)
C4: (15.853,-37.419,110.736)
P: (21.776,-38.663,108.672)
C4': (18.394,-40.586,108.691)
C2': (16.287,-39.563,108.433)
C2: (13.798,-36.875,111.228)
N1: (14.137,-35.641,111.573)
N3: (14.599,-37.826,110.809)
N6: (15.681,-34.006,111.813)
N7: (17.733,-36.172,110.779)
N9: (16.885,-38.170,110.347)
O5': (20.284,-39.119,108.905)
O3': (17.588,-40.098,106.449)
OP2: (21.852,-37.207,108.627)
C3': (17.640,-39.642,107.769)
C1': (16.684,-39.536,109.895)
C5': (19.894,-40.457,108.676)
O4': (17.899,-40.238,110.012)
C8: (17.995,-37.390,110.369)
O2': (15.566,-40.752,108.214)
C6: (15.420,-35.251,111.473)
C5: (16.364,-36.188,111.020)
C4: (15.853,-37.419,110.736)
P: (21.776,-38.663,108.672)
C4': (18.394,-40.586,108.691)
C2': (16.287,-39.563,108.433)
C2: (13.798,-36.875,111.228)
N1: (14.137,-35.641,111.573)
N3: (14.599,-37.826,110.809)
N6: (15.681,-34.006,111.813)
N7: (17.733,-36.172,110.779)
N9: (16.885,-38.170,110.347)
O5': (20.284,-39.119,108.905)
O3': (17.588,-40.098,106.449)
Image (generated by PyMOL):