Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12642:12685
Extra
PDB:
ATOM 1 O3' C A2641 6.284 22.315 30.995 1.00 45.69 O
ATOM 2 P A A2642 6.658 23.092 29.674 1.00 46.16 P
ATOM 3 OP1 A A2642 5.418 23.145 28.844 1.00 46.63 O
ATOM 4 OP2 A A2642 7.889 22.425 29.106 1.00 45.92 O
ATOM 5 O5' A A2642 7.013 24.549 30.232 1.00 46.26 O
ATOM 6 C5' A A2642 6.017 25.343 30.851 1.00 46.48 C
ATOM 7 C4' A A2642 6.601 26.528 31.549 1.00 46.46 C
ATOM 8 O4' A A2642 7.639 26.099 32.442 1.00 45.96 O
ATOM 9 C3' A A2642 7.283 27.542 30.663 1.00 46.76 C
ATOM 10 O3' A A2642 6.382 28.436 30.085 1.00 47.28 O
ATOM 11 C2' A A2642 8.229 28.230 31.616 1.00 46.51 C
ATOM 12 O2' A A2642 7.522 29.155 32.421 1.00 46.68 O
ATOM 13 C1' A A2642 8.661 27.074 32.490 1.00 45.96 C
ATOM 14 N9 A A2642 9.931 26.470 32.021 1.00 45.69 N
ATOM 15 C8 A A2642 10.058 25.302 31.313 1.00 45.57 C
ATOM 16 N7 A A2642 11.298 24.962 31.061 1.00 45.33 N
ATOM 17 C5 A A2642 12.050 25.969 31.625 1.00 45.29 C
ATOM 18 C6 A A2642 13.421 26.139 31.677 1.00 45.07 C
ATOM 19 N6 A A2642 14.226 25.263 31.110 1.00 44.88 N
ATOM 20 N1 A A2642 13.908 27.209 32.318 1.00 45.08 N
ATOM 21 C2 A A2642 13.028 28.043 32.861 1.00 45.31 C
ATOM 22 N3 A A2642 11.692 27.992 32.901 1.00 45.52 N
ATOM 23 C4 A A2642 11.243 26.906 32.242 1.00 45.50 C
ATOM 24 P U A2643 6.353 28.643 28.515 1.00 49.12 P
ATOM 25 OP1 U A2643 5.053 29.310 28.214 1.00 49.63 O
ATOM 26 OP2 U A2643 6.633 27.347 27.911 1.00 48.92 O
ATOM 27 O5' U A2643 7.557 29.647 28.265 1.00 49.18 O
TER
ATOM 1 O3' U B2684 2.479 34.077 37.335 1.00 54.73 O
ATOM 2 P A B2685 2.071 34.464 35.819 1.00 52.52 P
ATOM 3 OP1 A B2685 2.740 35.757 35.496 1.00 52.80 O
ATOM 4 OP2 A B2685 0.587 34.362 35.705 1.00 52.85 O
ATOM 5 O5' A B2685 2.746 33.306 34.983 1.00 52.23 O
ATOM 6 C5' A B2685 2.236 32.964 33.720 1.00 52.52 C
ATOM 7 C4' A B2685 3.134 32.006 33.065 1.00 52.21 C
ATOM 8 O4' A B2685 4.448 32.572 33.032 1.00 52.08 O
ATOM 9 C3' A B2685 3.297 30.712 33.802 1.00 51.68 C
ATOM 10 O3' A B2685 2.266 29.798 33.481 1.00 51.75 O
ATOM 11 C2' A B2685 4.697 30.253 33.396 1.00 51.36 C
ATOM 12 O2' A B2685 4.669 29.637 32.114 1.00 51.50 O
ATOM 13 C1' A B2685 5.410 31.581 33.233 1.00 51.58 C
ATOM 14 N9 A B2685 6.262 31.995 34.367 1.00 51.27 N
ATOM 15 C8 A B2685 5.969 32.867 35.405 1.00 51.34 C
ATOM 16 N7 A B2685 6.985 33.177 36.177 1.00 51.06 N
ATOM 17 C5 A B2685 8.011 32.509 35.546 1.00 50.81 C
ATOM 18 C6 A B2685 9.353 32.435 35.824 1.00 50.48 C
ATOM 19 N6 A B2685 9.849 33.069 36.855 1.00 50.35 N
ATOM 20 N1 A B2685 10.157 31.706 35.032 1.00 50.30 N
ATOM 21 C2 A B2685 9.627 31.077 33.985 1.00 50.45 C
ATOM 22 N3 A B2685 8.369 31.078 33.602 1.00 50.78 N
ATOM 23 C4 A B2685 7.612 31.814 34.431 1.00 50.94 C
ATOM 24 P A B2686 1.493 28.999 34.640 1.00 45.74 P
ATOM 25 OP1 A B2686 0.371 28.270 33.991 1.00 45.96 O
ATOM 26 OP2 A B2686 1.190 29.978 35.725 1.00 45.82 O
ATOM 27 O5' A B2686 2.601 27.943 35.118 1.00 45.14 O
TER
ATOM 2 P A A2642 6.658 23.092 29.674 1.00 46.16 P
ATOM 3 OP1 A A2642 5.418 23.145 28.844 1.00 46.63 O
ATOM 4 OP2 A A2642 7.889 22.425 29.106 1.00 45.92 O
ATOM 5 O5' A A2642 7.013 24.549 30.232 1.00 46.26 O
ATOM 6 C5' A A2642 6.017 25.343 30.851 1.00 46.48 C
ATOM 7 C4' A A2642 6.601 26.528 31.549 1.00 46.46 C
ATOM 8 O4' A A2642 7.639 26.099 32.442 1.00 45.96 O
ATOM 9 C3' A A2642 7.283 27.542 30.663 1.00 46.76 C
ATOM 10 O3' A A2642 6.382 28.436 30.085 1.00 47.28 O
ATOM 11 C2' A A2642 8.229 28.230 31.616 1.00 46.51 C
ATOM 12 O2' A A2642 7.522 29.155 32.421 1.00 46.68 O
ATOM 13 C1' A A2642 8.661 27.074 32.490 1.00 45.96 C
ATOM 14 N9 A A2642 9.931 26.470 32.021 1.00 45.69 N
ATOM 15 C8 A A2642 10.058 25.302 31.313 1.00 45.57 C
ATOM 16 N7 A A2642 11.298 24.962 31.061 1.00 45.33 N
ATOM 17 C5 A A2642 12.050 25.969 31.625 1.00 45.29 C
ATOM 18 C6 A A2642 13.421 26.139 31.677 1.00 45.07 C
ATOM 19 N6 A A2642 14.226 25.263 31.110 1.00 44.88 N
ATOM 20 N1 A A2642 13.908 27.209 32.318 1.00 45.08 N
ATOM 21 C2 A A2642 13.028 28.043 32.861 1.00 45.31 C
ATOM 22 N3 A A2642 11.692 27.992 32.901 1.00 45.52 N
ATOM 23 C4 A A2642 11.243 26.906 32.242 1.00 45.50 C
ATOM 24 P U A2643 6.353 28.643 28.515 1.00 49.12 P
ATOM 25 OP1 U A2643 5.053 29.310 28.214 1.00 49.63 O
ATOM 26 OP2 U A2643 6.633 27.347 27.911 1.00 48.92 O
ATOM 27 O5' U A2643 7.557 29.647 28.265 1.00 49.18 O
TER
ATOM 1 O3' U B2684 2.479 34.077 37.335 1.00 54.73 O
ATOM 2 P A B2685 2.071 34.464 35.819 1.00 52.52 P
ATOM 3 OP1 A B2685 2.740 35.757 35.496 1.00 52.80 O
ATOM 4 OP2 A B2685 0.587 34.362 35.705 1.00 52.85 O
ATOM 5 O5' A B2685 2.746 33.306 34.983 1.00 52.23 O
ATOM 6 C5' A B2685 2.236 32.964 33.720 1.00 52.52 C
ATOM 7 C4' A B2685 3.134 32.006 33.065 1.00 52.21 C
ATOM 8 O4' A B2685 4.448 32.572 33.032 1.00 52.08 O
ATOM 9 C3' A B2685 3.297 30.712 33.802 1.00 51.68 C
ATOM 10 O3' A B2685 2.266 29.798 33.481 1.00 51.75 O
ATOM 11 C2' A B2685 4.697 30.253 33.396 1.00 51.36 C
ATOM 12 O2' A B2685 4.669 29.637 32.114 1.00 51.50 O
ATOM 13 C1' A B2685 5.410 31.581 33.233 1.00 51.58 C
ATOM 14 N9 A B2685 6.262 31.995 34.367 1.00 51.27 N
ATOM 15 C8 A B2685 5.969 32.867 35.405 1.00 51.34 C
ATOM 16 N7 A B2685 6.985 33.177 36.177 1.00 51.06 N
ATOM 17 C5 A B2685 8.011 32.509 35.546 1.00 50.81 C
ATOM 18 C6 A B2685 9.353 32.435 35.824 1.00 50.48 C
ATOM 19 N6 A B2685 9.849 33.069 36.855 1.00 50.35 N
ATOM 20 N1 A B2685 10.157 31.706 35.032 1.00 50.30 N
ATOM 21 C2 A B2685 9.627 31.077 33.985 1.00 50.45 C
ATOM 22 N3 A B2685 8.369 31.078 33.602 1.00 50.78 N
ATOM 23 C4 A B2685 7.612 31.814 34.431 1.00 50.94 C
ATOM 24 P A B2686 1.493 28.999 34.640 1.00 45.74 P
ATOM 25 OP1 A B2686 0.371 28.270 33.991 1.00 45.96 O
ATOM 26 OP2 A B2686 1.190 29.978 35.725 1.00 45.82 O
ATOM 27 O5' A B2686 2.601 27.943 35.118 1.00 45.14 O
TER
Atoms:
OP1: (5.418,23.145,28.844)
OP2: (7.889,22.425,29.106)
C3': (7.283,27.542,30.663)
C1': (8.661,27.074,32.490)
C5': (6.017,25.343,30.851)
O4': (7.639,26.099,32.442)
C8: (10.058,25.302,31.313)
O2': (7.522,29.155,32.421)
C6: (13.421,26.139,31.677)
C5: (12.050,25.969,31.625)
C4: (11.243,26.906,32.242)
P: (6.658,23.092,29.674)
C4': (6.601,26.528,31.549)
C2': (8.229,28.230,31.616)
C2: (13.028,28.043,32.861)
N1: (13.908,27.209,32.318)
N3: (11.692,27.992,32.901)
N6: (14.226,25.263,31.110)
N7: (11.298,24.962,31.061)
N9: (9.931,26.470,32.021)
O5': (7.013,24.549,30.232)
O3': (6.382,28.436,30.085)
OP2: (7.889,22.425,29.106)
C3': (7.283,27.542,30.663)
C1': (8.661,27.074,32.490)
C5': (6.017,25.343,30.851)
O4': (7.639,26.099,32.442)
C8: (10.058,25.302,31.313)
O2': (7.522,29.155,32.421)
C6: (13.421,26.139,31.677)
C5: (12.050,25.969,31.625)
C4: (11.243,26.906,32.242)
P: (6.658,23.092,29.674)
C4': (6.601,26.528,31.549)
C2': (8.229,28.230,31.616)
C2: (13.028,28.043,32.861)
N1: (13.908,27.209,32.318)
N3: (11.692,27.992,32.901)
N6: (14.226,25.263,31.110)
N7: (11.298,24.962,31.061)
N9: (9.931,26.470,32.021)
O5': (7.013,24.549,30.232)
O3': (6.382,28.436,30.085)
OP1: (2.740,35.757,35.496)
OP2: (0.587,34.362,35.705)
C3': (3.297,30.712,33.802)
C1': (5.410,31.581,33.233)
C5': (2.236,32.964,33.720)
O4': (4.448,32.572,33.032)
C8: (5.969,32.867,35.405)
O2': (4.669,29.637,32.114)
C6: (9.353,32.435,35.824)
C5: (8.011,32.509,35.546)
C4: (7.612,31.814,34.431)
P: (2.071,34.464,35.819)
C4': (3.134,32.006,33.065)
C2': (4.697,30.253,33.396)
C2: (9.627,31.077,33.985)
N1: (10.157,31.706,35.032)
N3: (8.369,31.078,33.602)
N6: (9.849,33.069,36.855)
N7: (6.985,33.177,36.177)
N9: (6.262,31.995,34.367)
O5': (2.746,33.306,34.983)
O3': (2.266,29.798,33.481)
OP2: (0.587,34.362,35.705)
C3': (3.297,30.712,33.802)
C1': (5.410,31.581,33.233)
C5': (2.236,32.964,33.720)
O4': (4.448,32.572,33.032)
C8: (5.969,32.867,35.405)
O2': (4.669,29.637,32.114)
C6: (9.353,32.435,35.824)
C5: (8.011,32.509,35.546)
C4: (7.612,31.814,34.431)
P: (2.071,34.464,35.819)
C4': (3.134,32.006,33.065)
C2': (4.697,30.253,33.396)
C2: (9.627,31.077,33.985)
N1: (10.157,31.706,35.032)
N3: (8.369,31.078,33.602)
N6: (9.849,33.069,36.855)
N7: (6.985,33.177,36.177)
N9: (6.262,31.995,34.367)
O5': (2.746,33.306,34.983)
O3': (2.266,29.798,33.481)
Image (generated by PyMOL):