ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:12644:12881

Extra

PDB:
ATOM 1 O3' U A2643 9.229 32.500 26.727 1.00 49.94 O
ATOM 2 P A A2644 9.323 32.293 25.130 1.00 51.36 P
ATOM 3 OP1 A A2644 8.612 33.440 24.487 1.00 51.97 O
ATOM 4 OP2 A A2644 8.863 30.912 24.819 1.00 51.18 O
ATOM 5 O5' A A2644 10.888 32.403 24.893 1.00 51.14 O
ATOM 6 C5' A A2644 11.503 33.614 24.508 1.00 51.44 C
ATOM 7 C4' A A2644 12.685 33.341 23.628 1.00 51.39 C
ATOM 8 O4' A A2644 13.562 32.414 24.282 1.00 50.82 O
ATOM 9 C3' A A2644 12.378 32.669 22.306 1.00 51.64 C
ATOM 10 O3' A A2644 11.984 33.585 21.331 1.00 52.23 O
ATOM 11 C2' A A2644 13.681 31.994 21.964 1.00 51.33 C
ATOM 12 O2' A A2644 14.608 32.948 21.453 1.00 51.55 O
ATOM 13 C1' A A2644 14.149 31.557 23.337 1.00 50.76 C
ATOM 14 N9 A A2644 13.747 30.175 23.641 1.00 50.41 N
ATOM 15 C8 A A2644 12.719 29.686 24.372 1.00 50.27 C
ATOM 16 N7 A A2644 12.720 28.384 24.408 1.00 49.96 N
ATOM 17 C5 A A2644 13.824 27.983 23.679 1.00 49.87 C
ATOM 18 C6 A A2644 14.416 26.736 23.330 1.00 49.59 C
ATOM 19 N6 A A2644 14.012 25.516 23.675 1.00 49.30 N
ATOM 20 N1 A A2644 15.516 26.739 22.572 1.00 49.61 N
ATOM 21 C2 A A2644 15.991 27.926 22.212 1.00 49.89 C
ATOM 22 N3 A A2644 15.548 29.139 22.474 1.00 50.17 N
ATOM 23 C4 A A2644 14.453 29.095 23.216 1.00 50.14 C
ATOM 24 P C A2645 10.805 33.219 20.341 1.00 49.28 P
ATOM 25 OP1 C A2645 10.274 34.506 19.850 1.00 49.87 O
ATOM 26 OP2 C A2645 9.907 32.281 21.064 1.00 49.00 O
ATOM 27 O5' C A2645 11.531 32.450 19.154 1.00 49.30 O
TER

ATOM 1 O3' G B2880 17.604 33.577 14.604 1.00 58.51 O
ATOM 2 P A B2881 17.973 34.814 15.529 1.00 55.14 P
ATOM 3 OP1 A B2881 16.936 35.858 15.327 1.00 55.66 O
ATOM 4 OP2 A B2881 19.390 35.143 15.226 1.00 55.09 O
ATOM 5 O5' A B2881 17.858 34.178 16.985 1.00 54.53 O
ATOM 6 C5' A B2881 16.707 33.438 17.313 1.00 54.43 C
ATOM 7 C4' A B2881 16.923 32.497 18.462 1.00 53.80 C
ATOM 8 O4' A B2881 17.606 31.311 18.037 1.00 53.52 O
ATOM 9 C3' A B2881 17.755 32.982 19.621 1.00 53.44 C
ATOM 10 O3' A B2881 17.071 33.921 20.419 1.00 53.56 O
ATOM 11 C2' A B2881 18.035 31.678 20.345 1.00 52.86 C
ATOM 12 O2' A B2881 16.929 31.310 21.132 1.00 52.72 O
ATOM 13 C1' A B2881 18.140 30.690 19.183 1.00 52.94 C
ATOM 14 N9 A B2881 19.522 30.308 18.910 1.00 52.72 N
ATOM 15 C8 A B2881 20.414 30.861 18.051 1.00 52.97 C
ATOM 16 N7 A B2881 21.538 30.248 18.073 1.00 52.65 N
ATOM 17 C5 A B2881 21.354 29.237 18.995 1.00 52.17 C
ATOM 18 C6 A B2881 22.199 28.235 19.471 1.00 51.68 C
ATOM 19 N6 A B2881 23.438 28.054 19.037 1.00 51.59 N
ATOM 20 N1 A B2881 21.695 27.404 20.391 1.00 51.30 N
ATOM 21 C2 A B2881 20.422 27.564 20.798 1.00 51.40 C
ATOM 22 N3 A B2881 19.539 28.482 20.440 1.00 51.84 N
ATOM 23 C4 A B2881 20.105 29.275 19.523 1.00 52.20 C
ATOM 24 P A B2882 17.855 35.133 21.109 1.00 52.73 P
ATOM 25 OP1 A B2882 17.168 36.387 20.725 1.00 53.29 O
ATOM 26 OP2 A B2882 19.274 34.970 20.780 1.00 52.55 O
ATOM 27 O5' A B2882 17.632 34.845 22.623 1.00 52.26 O
TER

Atoms:
OP1: (8.612,33.440,24.487)
OP2: (8.863,30.912,24.819)
C3': (12.378,32.669,22.306)
C1': (14.149,31.557,23.337)
C5': (11.503,33.614,24.508)
O4': (13.562,32.414,24.282)
C8: (12.719,29.686,24.372)
O2': (14.608,32.948,21.453)
C6: (14.416,26.736,23.330)
C5: (13.824,27.983,23.679)
C4: (14.453,29.095,23.216)
P: (9.323,32.293,25.130)
C4': (12.685,33.341,23.628)
C2': (13.681,31.994,21.964)
C2: (15.991,27.926,22.212)
N1: (15.516,26.739,22.572)
N3: (15.548,29.139,22.474)
N6: (14.012,25.516,23.675)
N7: (12.720,28.384,24.408)
N9: (13.747,30.175,23.641)
O5': (10.888,32.403,24.893)
O3': (11.984,33.585,21.331)
OP1: (16.936,35.858,15.327)
OP2: (19.390,35.143,15.226)
C3': (17.755,32.982,19.621)
C1': (18.140,30.690,19.183)
C5': (16.707,33.438,17.313)
O4': (17.606,31.311,18.037)
C8: (20.414,30.861,18.051)
O2': (16.929,31.310,21.132)
C6: (22.199,28.235,19.471)
C5: (21.354,29.237,18.995)
C4: (20.105,29.275,19.523)
P: (17.973,34.814,15.529)
C4': (16.923,32.497,18.462)
C2': (18.035,31.678,20.345)
C2: (20.422,27.564,20.798)
N1: (21.695,27.404,20.391)
N3: (19.539,28.482,20.440)
N6: (23.438,28.054,19.037)
N7: (21.538,30.248,18.073)
N9: (19.522,30.308,18.910)
O5': (17.858,34.178,16.985)
O3': (17.071,33.921,20.419)
Image (generated by PyMOL):
PyMOL image
show in jmol