Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12936:12939
Extra
PDB:
ATOM 1 O3' A A2935 48.994 33.515 -0.980 1.00 51.63 O
ATOM 2 P A A2936 48.685 31.961 -0.765 1.00 51.90 P
ATOM 3 OP1 A A2936 47.280 31.881 -0.360 1.00 51.77 O
ATOM 4 OP2 A A2936 49.724 31.414 0.145 1.00 51.38 O
ATOM 5 O5' A A2936 48.870 31.328 -2.212 1.00 52.33 O
ATOM 6 C5' A A2936 47.805 31.256 -3.105 1.00 52.73 C
ATOM 7 C4' A A2936 48.204 30.529 -4.338 1.00 53.07 C
ATOM 8 O4' A A2936 49.509 30.969 -4.757 1.00 53.29 O
ATOM 9 C3' A A2936 48.342 29.028 -4.214 1.00 52.69 C
ATOM 10 O3' A A2936 47.087 28.360 -4.237 1.00 52.61 O
ATOM 11 C2' A A2936 49.260 28.687 -5.392 1.00 53.08 C
ATOM 12 O2' A A2936 48.546 28.617 -6.609 1.00 53.62 O
ATOM 13 C1' A A2936 50.174 29.919 -5.432 1.00 53.33 C
ATOM 14 N9 A A2936 51.448 29.660 -4.736 1.00 52.94 N
ATOM 15 C8 A A2936 51.734 30.055 -3.459 1.00 52.48 C
ATOM 16 N7 A A2936 52.895 29.645 -3.057 1.00 52.20 N
ATOM 17 C5 A A2936 53.420 28.945 -4.129 1.00 52.49 C
ATOM 18 C6 A A2936 54.661 28.295 -4.288 1.00 52.41 C
ATOM 19 N6 A A2936 55.558 28.275 -3.304 1.00 51.99 N
ATOM 20 N1 A A2936 54.925 27.670 -5.462 1.00 52.78 N
ATOM 21 C2 A A2936 53.937 27.717 -6.386 1.00 53.20 C
ATOM 22 N3 A A2936 52.720 28.308 -6.371 1.00 53.33 N
ATOM 23 C4 A A2936 52.526 28.921 -5.180 1.00 52.95 C
ATOM 24 P U A2937 46.937 26.869 -3.641 1.00 50.03 P
ATOM 25 OP1 U A2937 45.586 26.379 -4.010 1.00 50.16 O
ATOM 26 OP2 U A2937 47.336 26.899 -2.173 1.00 49.41 O
ATOM 27 O5' U A2937 48.029 26.075 -4.453 1.00 50.18 O
TER
ATOM 1 O3' A B2938 45.340 23.837 -10.863 1.00 54.69 O
ATOM 2 P A B2939 45.600 25.378 -11.180 1.00 53.88 P
ATOM 3 OP1 A B2939 45.366 26.134 -9.915 1.00 53.45 O
ATOM 4 OP2 A B2939 44.813 25.729 -12.373 1.00 54.56 O
ATOM 5 O5' A B2939 47.122 25.382 -11.549 1.00 53.98 O
ATOM 6 C5' A B2939 47.858 26.596 -11.557 1.00 54.18 C
ATOM 7 C4' A B2939 48.824 26.687 -10.397 1.00 53.61 C
ATOM 8 O4' A B2939 49.699 25.525 -10.370 1.00 53.34 O
ATOM 9 C3' A B2939 49.772 27.868 -10.434 1.00 53.82 C
ATOM 10 O3' A B2939 49.166 29.044 -9.972 1.00 53.88 O
ATOM 11 C2' A B2939 50.921 27.396 -9.563 1.00 53.29 C
ATOM 12 O2' A B2939 50.582 27.507 -8.191 1.00 52.71 O
ATOM 13 C1' A B2939 50.992 25.915 -9.940 1.00 53.18 C
ATOM 14 N9 A B2939 51.950 25.689 -11.042 1.00 53.62 N
ATOM 15 C8 A B2939 51.759 25.422 -12.369 1.00 54.19 C
ATOM 16 N7 A B2939 52.872 25.297 -13.072 1.00 54.48 N
ATOM 17 C5 A B2939 53.849 25.519 -12.141 1.00 54.06 C
ATOM 18 C6 A B2939 55.235 25.532 -12.219 1.00 54.07 C
ATOM 19 N6 A B2939 55.911 25.321 -13.350 1.00 54.56 N
ATOM 20 N1 A B2939 55.930 25.774 -11.097 1.00 53.59 N
ATOM 21 C2 A B2939 55.285 25.999 -9.967 1.00 53.12 C
ATOM 22 N3 A B2939 53.972 26.011 -9.761 1.00 53.04 N
ATOM 23 C4 A B2939 53.306 25.761 -10.901 1.00 53.53 C
ATOM 24 P G B2940 49.838 30.464 -10.234 1.00 53.36 P
ATOM 25 OP1 G B2940 49.067 31.469 -9.462 1.00 53.26 O
ATOM 26 OP2 G B2940 49.962 30.628 -11.698 1.00 54.07 O
ATOM 27 O5' G B2940 51.270 30.280 -9.594 1.00 52.98 O
TER
ATOM 2 P A A2936 48.685 31.961 -0.765 1.00 51.90 P
ATOM 3 OP1 A A2936 47.280 31.881 -0.360 1.00 51.77 O
ATOM 4 OP2 A A2936 49.724 31.414 0.145 1.00 51.38 O
ATOM 5 O5' A A2936 48.870 31.328 -2.212 1.00 52.33 O
ATOM 6 C5' A A2936 47.805 31.256 -3.105 1.00 52.73 C
ATOM 7 C4' A A2936 48.204 30.529 -4.338 1.00 53.07 C
ATOM 8 O4' A A2936 49.509 30.969 -4.757 1.00 53.29 O
ATOM 9 C3' A A2936 48.342 29.028 -4.214 1.00 52.69 C
ATOM 10 O3' A A2936 47.087 28.360 -4.237 1.00 52.61 O
ATOM 11 C2' A A2936 49.260 28.687 -5.392 1.00 53.08 C
ATOM 12 O2' A A2936 48.546 28.617 -6.609 1.00 53.62 O
ATOM 13 C1' A A2936 50.174 29.919 -5.432 1.00 53.33 C
ATOM 14 N9 A A2936 51.448 29.660 -4.736 1.00 52.94 N
ATOM 15 C8 A A2936 51.734 30.055 -3.459 1.00 52.48 C
ATOM 16 N7 A A2936 52.895 29.645 -3.057 1.00 52.20 N
ATOM 17 C5 A A2936 53.420 28.945 -4.129 1.00 52.49 C
ATOM 18 C6 A A2936 54.661 28.295 -4.288 1.00 52.41 C
ATOM 19 N6 A A2936 55.558 28.275 -3.304 1.00 51.99 N
ATOM 20 N1 A A2936 54.925 27.670 -5.462 1.00 52.78 N
ATOM 21 C2 A A2936 53.937 27.717 -6.386 1.00 53.20 C
ATOM 22 N3 A A2936 52.720 28.308 -6.371 1.00 53.33 N
ATOM 23 C4 A A2936 52.526 28.921 -5.180 1.00 52.95 C
ATOM 24 P U A2937 46.937 26.869 -3.641 1.00 50.03 P
ATOM 25 OP1 U A2937 45.586 26.379 -4.010 1.00 50.16 O
ATOM 26 OP2 U A2937 47.336 26.899 -2.173 1.00 49.41 O
ATOM 27 O5' U A2937 48.029 26.075 -4.453 1.00 50.18 O
TER
ATOM 1 O3' A B2938 45.340 23.837 -10.863 1.00 54.69 O
ATOM 2 P A B2939 45.600 25.378 -11.180 1.00 53.88 P
ATOM 3 OP1 A B2939 45.366 26.134 -9.915 1.00 53.45 O
ATOM 4 OP2 A B2939 44.813 25.729 -12.373 1.00 54.56 O
ATOM 5 O5' A B2939 47.122 25.382 -11.549 1.00 53.98 O
ATOM 6 C5' A B2939 47.858 26.596 -11.557 1.00 54.18 C
ATOM 7 C4' A B2939 48.824 26.687 -10.397 1.00 53.61 C
ATOM 8 O4' A B2939 49.699 25.525 -10.370 1.00 53.34 O
ATOM 9 C3' A B2939 49.772 27.868 -10.434 1.00 53.82 C
ATOM 10 O3' A B2939 49.166 29.044 -9.972 1.00 53.88 O
ATOM 11 C2' A B2939 50.921 27.396 -9.563 1.00 53.29 C
ATOM 12 O2' A B2939 50.582 27.507 -8.191 1.00 52.71 O
ATOM 13 C1' A B2939 50.992 25.915 -9.940 1.00 53.18 C
ATOM 14 N9 A B2939 51.950 25.689 -11.042 1.00 53.62 N
ATOM 15 C8 A B2939 51.759 25.422 -12.369 1.00 54.19 C
ATOM 16 N7 A B2939 52.872 25.297 -13.072 1.00 54.48 N
ATOM 17 C5 A B2939 53.849 25.519 -12.141 1.00 54.06 C
ATOM 18 C6 A B2939 55.235 25.532 -12.219 1.00 54.07 C
ATOM 19 N6 A B2939 55.911 25.321 -13.350 1.00 54.56 N
ATOM 20 N1 A B2939 55.930 25.774 -11.097 1.00 53.59 N
ATOM 21 C2 A B2939 55.285 25.999 -9.967 1.00 53.12 C
ATOM 22 N3 A B2939 53.972 26.011 -9.761 1.00 53.04 N
ATOM 23 C4 A B2939 53.306 25.761 -10.901 1.00 53.53 C
ATOM 24 P G B2940 49.838 30.464 -10.234 1.00 53.36 P
ATOM 25 OP1 G B2940 49.067 31.469 -9.462 1.00 53.26 O
ATOM 26 OP2 G B2940 49.962 30.628 -11.698 1.00 54.07 O
ATOM 27 O5' G B2940 51.270 30.280 -9.594 1.00 52.98 O
TER
Atoms:
OP1: (47.280,31.881,-0.360)
OP2: (49.724,31.414,0.145)
C3': (48.342,29.028,-4.214)
C1': (50.174,29.919,-5.432)
C5': (47.805,31.256,-3.105)
O4': (49.509,30.969,-4.757)
C8: (51.734,30.055,-3.459)
O2': (48.546,28.617,-6.609)
C6: (54.661,28.295,-4.288)
C5: (53.420,28.945,-4.129)
C4: (52.526,28.921,-5.180)
P: (48.685,31.961,-0.765)
C4': (48.204,30.529,-4.338)
C2': (49.260,28.687,-5.392)
C2: (53.937,27.717,-6.386)
N1: (54.925,27.670,-5.462)
N3: (52.720,28.308,-6.371)
N6: (55.558,28.275,-3.304)
N7: (52.895,29.645,-3.057)
N9: (51.448,29.660,-4.736)
O5': (48.870,31.328,-2.212)
O3': (47.087,28.360,-4.237)
OP2: (49.724,31.414,0.145)
C3': (48.342,29.028,-4.214)
C1': (50.174,29.919,-5.432)
C5': (47.805,31.256,-3.105)
O4': (49.509,30.969,-4.757)
C8: (51.734,30.055,-3.459)
O2': (48.546,28.617,-6.609)
C6: (54.661,28.295,-4.288)
C5: (53.420,28.945,-4.129)
C4: (52.526,28.921,-5.180)
P: (48.685,31.961,-0.765)
C4': (48.204,30.529,-4.338)
C2': (49.260,28.687,-5.392)
C2: (53.937,27.717,-6.386)
N1: (54.925,27.670,-5.462)
N3: (52.720,28.308,-6.371)
N6: (55.558,28.275,-3.304)
N7: (52.895,29.645,-3.057)
N9: (51.448,29.660,-4.736)
O5': (48.870,31.328,-2.212)
O3': (47.087,28.360,-4.237)
OP1: (45.366,26.134,-9.915)
OP2: (44.813,25.729,-12.373)
C3': (49.772,27.868,-10.434)
C1': (50.992,25.915,-9.940)
C5': (47.858,26.596,-11.557)
O4': (49.699,25.525,-10.370)
C8: (51.759,25.422,-12.369)
O2': (50.582,27.507,-8.191)
C6: (55.235,25.532,-12.219)
C5: (53.849,25.519,-12.141)
C4: (53.306,25.761,-10.901)
P: (45.600,25.378,-11.180)
C4': (48.824,26.687,-10.397)
C2': (50.921,27.396,-9.563)
C2: (55.285,25.999,-9.967)
N1: (55.930,25.774,-11.097)
N3: (53.972,26.011,-9.761)
N6: (55.911,25.321,-13.350)
N7: (52.872,25.297,-13.072)
N9: (51.950,25.689,-11.042)
O5': (47.122,25.382,-11.549)
O3': (49.166,29.044,-9.972)
OP2: (44.813,25.729,-12.373)
C3': (49.772,27.868,-10.434)
C1': (50.992,25.915,-9.940)
C5': (47.858,26.596,-11.557)
O4': (49.699,25.525,-10.370)
C8: (51.759,25.422,-12.369)
O2': (50.582,27.507,-8.191)
C6: (55.235,25.532,-12.219)
C5: (53.849,25.519,-12.141)
C4: (53.306,25.761,-10.901)
P: (45.600,25.378,-11.180)
C4': (48.824,26.687,-10.397)
C2': (50.921,27.396,-9.563)
C2: (55.285,25.999,-9.967)
N1: (55.930,25.774,-11.097)
N3: (53.972,26.011,-9.761)
N6: (55.911,25.321,-13.350)
N7: (52.872,25.297,-13.072)
N9: (51.950,25.689,-11.042)
O5': (47.122,25.382,-11.549)
O3': (49.166,29.044,-9.972)
Image (generated by PyMOL):