ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0507:014

Extra

PDB:
ATOM 1 O3' G A 506 25.090 140.574 69.768 1.00 40.55 O
ATOM 2 P A A 507 24.841 140.631 71.349 1.00 40.37 P
ATOM 3 OP1 A A 507 23.405 140.871 71.601 1.00 42.51 O
ATOM 4 OP2 A A 507 25.844 141.550 71.936 1.00 41.33 O
ATOM 5 O5' A A 507 25.160 139.151 71.824 1.00 39.39 O
ATOM 6 C5' A A 507 24.246 138.078 71.552 1.00 38.37 C
ATOM 7 C4' A A 507 24.893 136.759 71.881 1.00 38.34 C
ATOM 8 O4' A A 507 25.834 136.386 70.845 1.00 38.85 O
ATOM 9 C3' A A 507 25.694 136.789 73.162 1.00 37.41 C
ATOM 10 O3' A A 507 24.850 136.546 74.272 1.00 37.20 O
ATOM 11 C2' A A 507 26.749 135.723 72.919 1.00 38.35 C
ATOM 12 O2' A A 507 26.242 134.419 73.101 1.00 40.58 O
ATOM 13 C1' A A 507 27.036 135.930 71.431 1.00 38.05 C
ATOM 14 N9 A A 507 28.068 136.919 71.118 1.00 38.54 N
ATOM 15 C8 A A 507 27.873 138.157 70.553 1.00 39.00 C
ATOM 16 N7 A A 507 28.977 138.821 70.339 1.00 39.19 N
ATOM 17 C5 A A 507 29.970 137.972 70.803 1.00 40.05 C
ATOM 18 C6 A A 507 31.364 138.092 70.840 1.00 40.65 C
ATOM 19 N6 A A 507 32.025 139.153 70.375 1.00 41.86 N
ATOM 20 N1 A A 507 32.067 137.070 71.367 1.00 39.99 N
ATOM 21 C2 A A 507 31.401 136.000 71.813 1.00 40.13 C
ATOM 22 N3 A A 507 30.095 135.765 71.823 1.00 39.62 N
ATOM 23 C4 A A 507 29.425 136.802 71.297 1.00 39.15 C
ATOM 24 P A A 508 25.133 137.298 75.653 1.00 38.46 P
ATOM 25 OP1 A A 508 24.029 136.987 76.592 1.00 37.93 O
ATOM 26 OP2 A A 508 25.458 138.717 75.360 1.00 37.39 O
ATOM 27 O5' A A 508 26.442 136.554 76.162 1.00 38.70 O
TER

ATOM 1 O3' G B 13 36.508 143.375 71.159 1.00 39.04 O
ATOM 2 P G B 14 36.809 143.521 69.591 1.00 37.24 P
ATOM 3 OP1 G B 14 38.259 143.309 69.364 1.00 37.49 O
ATOM 4 OP2 G B 14 36.174 144.785 69.142 1.00 38.70 O
ATOM 5 O5' G B 14 36.029 142.300 68.943 1.00 34.98 O
ATOM 6 C5' G B 14 36.209 140.962 69.438 1.00 33.91 C
ATOM 7 C4' G B 14 35.146 140.068 68.868 1.00 34.21 C
ATOM 8 O4' G B 14 33.861 140.689 69.150 1.00 35.78 O
ATOM 9 C3' G B 14 35.197 139.903 67.354 1.00 33.75 C
ATOM 10 O3' G B 14 34.589 138.661 67.029 1.00 34.74 O
ATOM 11 C2' G B 14 34.320 141.051 66.881 1.00 33.89 C
ATOM 12 O2' G B 14 33.779 140.846 65.604 1.00 32.43 O
ATOM 13 C1' G B 14 33.223 141.033 67.941 1.00 35.95 C
ATOM 14 N9 G B 14 32.538 142.310 68.113 1.00 38.65 N
ATOM 15 C8 G B 14 33.060 143.567 67.927 1.00 39.20 C
ATOM 16 N7 G B 14 32.175 144.516 68.073 1.00 40.91 N
ATOM 17 C5 G B 14 31.000 143.847 68.386 1.00 39.57 C
ATOM 18 C6 G B 14 29.701 144.345 68.616 1.00 38.99 C
ATOM 19 O6 G B 14 29.302 145.514 68.556 1.00 41.53 O
ATOM 20 N1 G B 14 28.812 143.327 68.927 1.00 37.91 N
ATOM 21 C2 G B 14 29.125 141.999 68.990 1.00 39.02 C
ATOM 22 N2 G B 14 28.124 141.172 69.324 1.00 39.61 N
ATOM 23 N3 G B 14 30.328 141.514 68.747 1.00 38.92 N
ATOM 24 C4 G B 14 31.213 142.489 68.453 1.00 39.36 C
ATOM 25 P A B 15 35.009 137.875 65.693 1.00 34.03 P
ATOM 26 OP1 A B 15 36.474 137.667 65.721 1.00 33.25 O
ATOM 27 OP2 A B 15 34.392 138.552 64.535 1.00 33.93 O
ATOM 28 O5' A B 15 34.300 136.463 65.880 1.00 33.33 O
TER

Atoms:
OP1: (23.405,140.871,71.601)
OP2: (25.844,141.550,71.936)
C3': (25.694,136.789,73.162)
C1': (27.036,135.930,71.431)
C5': (24.246,138.078,71.552)
O4': (25.834,136.386,70.845)
C8: (27.873,138.157,70.553)
O2': (26.242,134.419,73.101)
C6: (31.364,138.092,70.840)
C5: (29.970,137.972,70.803)
C4: (29.425,136.802,71.297)
P: (24.841,140.631,71.349)
C4': (24.893,136.759,71.881)
C2': (26.749,135.723,72.919)
C2: (31.401,136.000,71.813)
N1: (32.067,137.070,71.367)
N3: (30.095,135.765,71.823)
N6: (32.025,139.153,70.375)
N7: (28.977,138.821,70.339)
N9: (28.068,136.919,71.118)
O5': (25.160,139.151,71.824)
O3': (24.850,136.546,74.272)
OP1: (38.259,143.309,69.364)
OP2: (36.174,144.785,69.142)
C3': (35.197,139.903,67.354)
C1': (33.223,141.033,67.941)
C5': (36.209,140.962,69.438)
O6: (29.302,145.514,68.556)
O4': (33.861,140.689,69.150)
C8: (33.060,143.567,67.927)
C2: (29.125,141.999,68.990)
C6: (29.701,144.345,68.616)
C5: (31.000,143.847,68.386)
C4: (31.213,142.489,68.453)
P: (36.809,143.521,69.591)
C4': (35.146,140.068,68.868)
C2': (34.320,141.051,66.881)
O2': (33.779,140.846,65.604)
N1: (28.812,143.327,68.927)
N2: (28.124,141.172,69.324)
N3: (30.328,141.514,68.747)
N7: (32.175,144.516,68.073)
N9: (32.538,142.310,68.113)
O5': (36.029,142.300,68.943)
O3': (34.589,138.661,67.029)
Image (generated by PyMOL):
PyMOL image
show in jmol