ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJW:0508:013

Extra

PDB:
ATOM 1 O3' A A 507 24.688 136.403 74.351 1.00 37.31 O
ATOM 2 P A A 508 25.047 137.109 75.745 1.00 38.46 P
ATOM 3 OP1 A A 508 23.955 136.806 76.706 1.00 37.65 O
ATOM 4 OP2 A A 508 25.402 138.525 75.465 1.00 37.92 O
ATOM 5 O5' A A 508 26.367 136.343 76.203 1.00 38.17 O
ATOM 6 C5' A A 508 26.353 134.924 76.436 1.00 37.15 C
ATOM 7 C4' A A 508 27.742 134.437 76.755 1.00 37.39 C
ATOM 8 O4' A A 508 28.582 134.620 75.587 1.00 39.20 O
ATOM 9 C3' A A 508 28.471 135.188 77.859 1.00 36.67 C
ATOM 10 O3' A A 508 28.105 134.736 79.159 1.00 36.01 O
ATOM 11 C2' A A 508 29.934 134.912 77.528 1.00 38.53 C
ATOM 12 O2' A A 508 30.382 133.639 77.955 1.00 37.32 O
ATOM 13 C1' A A 508 29.905 134.944 75.997 1.00 39.33 C
ATOM 14 N9 A A 508 30.268 136.241 75.416 1.00 39.22 N
ATOM 15 C8 A A 508 29.430 137.258 75.018 1.00 38.12 C
ATOM 16 N7 A A 508 30.055 138.286 74.500 1.00 37.94 N
ATOM 17 C5 A A 508 31.396 137.929 74.566 1.00 39.02 C
ATOM 18 C6 A A 508 32.575 138.588 74.160 1.00 38.79 C
ATOM 19 N6 A A 508 32.589 139.788 73.566 1.00 38.22 N
ATOM 20 N1 A A 508 33.753 137.959 74.380 1.00 37.44 N
ATOM 21 C2 A A 508 33.737 136.753 74.954 1.00 37.45 C
ATOM 22 N3 A A 508 32.698 136.028 75.366 1.00 38.20 N
ATOM 23 C4 A A 508 31.542 136.679 75.140 1.00 38.80 C
ATOM 24 P A A 509 28.185 135.750 80.406 1.00 35.89 P
ATOM 25 OP1 A A 509 27.750 135.051 81.632 1.00 35.48 O
ATOM 26 OP2 A A 509 27.522 137.014 80.009 1.00 35.62 O
ATOM 27 O5' A A 509 29.741 136.028 80.572 1.00 36.85 O
TER

ATOM 1 O3' U B 12 34.214 148.251 73.944 1.00 38.08 O
ATOM 2 P G B 13 34.674 147.849 72.466 1.00 38.00 P
ATOM 3 OP1 G B 13 36.092 148.278 72.352 1.00 39.94 O
ATOM 4 OP2 G B 13 33.667 148.376 71.513 1.00 37.99 O
ATOM 5 O5' G B 13 34.630 146.254 72.458 1.00 37.69 O
ATOM 6 C5' G B 13 35.574 145.468 73.231 1.00 36.41 C
ATOM 7 C4' G B 13 35.241 143.997 73.116 1.00 35.59 C
ATOM 8 O4' G B 13 33.935 143.753 73.703 1.00 37.93 O
ATOM 9 C3' G B 13 35.130 143.492 71.689 1.00 34.39 C
ATOM 10 O3' G B 13 36.419 143.107 71.214 1.00 31.92 O
ATOM 11 C2' G B 13 34.151 142.331 71.818 1.00 33.94 C
ATOM 12 O2' G B 13 34.770 141.186 72.342 1.00 32.66 O
ATOM 13 C1' G B 13 33.198 142.852 72.894 1.00 35.65 C
ATOM 14 N9 G B 13 32.003 143.553 72.429 1.00 37.78 N
ATOM 15 C8 G B 13 31.931 144.849 71.979 1.00 38.67 C
ATOM 16 N7 G B 13 30.715 145.228 71.702 1.00 38.93 N
ATOM 17 C5 G B 13 29.936 144.111 71.965 1.00 38.80 C
ATOM 18 C6 G B 13 28.534 143.921 71.854 1.00 38.76 C
ATOM 19 O6 G B 13 27.675 144.731 71.499 1.00 42.07 O
ATOM 20 N1 G B 13 28.161 142.637 72.215 1.00 37.91 N
ATOM 21 C2 G B 13 29.022 141.660 72.636 1.00 39.57 C
ATOM 22 N2 G B 13 28.471 140.484 72.948 1.00 40.55 N
ATOM 23 N3 G B 13 30.330 141.820 72.746 1.00 40.53 N
ATOM 24 C4 G B 13 30.716 143.063 72.398 1.00 38.90 C
ATOM 25 P G B 14 36.818 143.350 69.671 1.00 30.78 P
ATOM 26 OP1 G B 14 38.287 143.191 69.572 1.00 29.09 O
ATOM 27 OP2 G B 14 36.179 144.611 69.201 1.00 30.18 O
ATOM 28 O5' G B 14 36.142 142.136 68.895 1.00 29.30 O
TER

Atoms:
OP1: (23.955,136.806,76.706)
OP2: (25.402,138.525,75.465)
C3': (28.471,135.188,77.859)
C1': (29.905,134.944,75.997)
C5': (26.353,134.924,76.436)
O4': (28.582,134.620,75.587)
C8: (29.430,137.258,75.018)
O2': (30.382,133.639,77.955)
C6: (32.575,138.588,74.160)
C5: (31.396,137.929,74.566)
C4: (31.542,136.679,75.140)
P: (25.047,137.109,75.745)
C4': (27.742,134.437,76.755)
C2': (29.934,134.912,77.528)
C2: (33.737,136.753,74.954)
N1: (33.753,137.959,74.380)
N3: (32.698,136.028,75.366)
N6: (32.589,139.788,73.566)
N7: (30.055,138.286,74.500)
N9: (30.268,136.241,75.416)
O5': (26.367,136.343,76.203)
O3': (28.105,134.736,79.159)
OP1: (36.092,148.278,72.352)
OP2: (33.667,148.376,71.513)
C3': (35.130,143.492,71.689)
C1': (33.198,142.852,72.894)
C5': (35.574,145.468,73.231)
O6: (27.675,144.731,71.499)
O4': (33.935,143.753,73.703)
C8: (31.931,144.849,71.979)
C2: (29.022,141.660,72.636)
C6: (28.534,143.921,71.854)
C5: (29.936,144.111,71.965)
C4: (30.716,143.063,72.398)
P: (34.674,147.849,72.466)
C4': (35.241,143.997,73.116)
C2': (34.151,142.331,71.818)
O2': (34.770,141.186,72.342)
N1: (28.161,142.637,72.215)
N2: (28.471,140.484,72.948)
N3: (30.330,141.820,72.746)
N7: (30.715,145.228,71.702)
N9: (32.003,143.553,72.429)
O5': (34.630,146.254,72.458)
O3': (36.419,143.107,71.214)
Image (generated by PyMOL):
PyMOL image
show in jmol