ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3V7E:C19:C34

Extra

PDB:
ATOM 1 O3' G A 18 39.388 6.510 -42.686 1.00 60.81 O
ATOM 2 P A A 19 40.782 6.012 -43.331 1.00 69.18 P
ATOM 3 OP1 A A 19 41.594 7.108 -43.917 1.00 71.36 O
ATOM 4 OP2 A A 19 40.342 4.905 -44.201 1.00 67.60 O
ATOM 5 O5' A A 19 41.578 5.368 -42.106 1.00 63.84 O
ATOM 6 C5' A A 19 42.250 6.155 -41.122 1.00 45.18 C
ATOM 7 C4' A A 19 43.367 5.335 -40.502 1.00 49.95 C
ATOM 8 O4' A A 19 42.784 4.092 -40.020 1.00 38.43 O
ATOM 9 C3' A A 19 44.350 4.931 -41.600 1.00 56.02 C
ATOM 10 O3' A A 19 45.780 5.040 -41.438 1.00 68.51 O
ATOM 11 C2' A A 19 43.944 3.524 -42.029 1.00 50.88 C
ATOM 12 O2' A A 19 45.068 2.704 -42.275 1.00 55.45 O
ATOM 13 C1' A A 19 43.253 3.005 -40.775 1.00 45.54 C
ATOM 14 N9 A A 19 42.222 1.980 -40.956 1.00 46.94 N
ATOM 15 C8 A A 19 41.159 1.954 -41.816 1.00 47.72 C
ATOM 16 N7 A A 19 40.507 0.812 -41.822 1.00 47.64 N
ATOM 17 C5 A A 19 41.168 0.042 -40.874 1.00 54.10 C
ATOM 18 C6 A A 19 40.977 -1.286 -40.412 1.00 50.76 C
ATOM 19 N6 A A 19 40.035 -2.110 -40.868 1.00 41.46 N
ATOM 20 N1 A A 19 41.811 -1.740 -39.456 1.00 49.58 N
ATOM 21 C2 A A 19 42.772 -0.924 -39.005 1.00 54.67 C
ATOM 22 N3 A A 19 43.058 0.326 -39.362 1.00 54.82 N
ATOM 23 C4 A A 19 42.210 0.759 -40.312 1.00 54.85 C
ATOM 24 P G A 20 46.458 6.047 -40.373 1.00 63.71 P
ATOM 25 OP1 G A 20 46.354 7.480 -40.764 1.00 70.18 O
ATOM 26 OP2 G A 20 47.788 5.445 -40.105 1.00 56.70 O
ATOM 27 O5' G A 20 45.665 5.863 -39.030 1.00 62.64 O
TER

ATOM 1 O3' U B 33 36.556 -9.525 -40.118 1.00 34.45 O
ATOM 2 P G B 34 35.657 -8.251 -39.743 1.00 46.93 P
ATOM 3 OP1 G B 34 35.357 -8.323 -38.288 1.00 35.11 O
ATOM 4 OP2 G B 34 34.550 -8.160 -40.726 1.00 44.68 O
ATOM 5 O5' G B 34 36.568 -6.974 -40.019 1.00 43.29 O
ATOM 6 C5' G B 34 37.668 -6.666 -39.192 1.00 27.90 C
ATOM 7 C4' G B 34 37.932 -5.193 -39.203 1.00 35.54 C
ATOM 8 O4' G B 34 38.006 -4.729 -40.576 1.00 42.54 O
ATOM 9 C3' G B 34 36.796 -4.407 -38.549 1.00 29.29 C
ATOM 10 O3' G B 34 37.390 -3.432 -37.687 1.00 40.09 O
ATOM 11 C2' G B 34 35.926 -3.901 -39.706 1.00 37.09 C
ATOM 12 O2' G B 34 35.437 -2.593 -39.546 1.00 46.91 O
ATOM 13 C1' G B 34 36.946 -3.844 -40.837 1.00 36.83 C
ATOM 14 N9 G B 34 36.555 -3.887 -42.241 1.00 37.27 N
ATOM 15 C8 G B 34 35.818 -4.832 -42.905 1.00 41.83 C
ATOM 16 N7 G B 34 35.599 -4.522 -44.156 1.00 37.15 N
ATOM 17 C5 G B 34 36.243 -3.306 -44.323 1.00 37.68 C
ATOM 18 C6 G B 34 36.356 -2.466 -45.463 1.00 45.86 C
ATOM 19 O6 G B 34 35.884 -2.628 -46.597 1.00 47.18 O
ATOM 20 N1 G B 34 37.114 -1.331 -45.185 1.00 51.58 N
ATOM 21 C2 G B 34 37.691 -1.046 -43.977 1.00 43.23 C
ATOM 22 N2 G B 34 38.381 0.090 -43.903 1.00 40.98 N
ATOM 23 N3 G B 34 37.596 -1.819 -42.919 1.00 39.73 N
ATOM 24 C4 G B 34 36.857 -2.918 -43.157 1.00 37.39 C
ATOM 25 P A B 35 36.643 -2.896 -36.369 1.00 48.47 P
ATOM 26 OP1 A B 35 36.098 -4.030 -35.589 1.00 49.62 O
ATOM 27 OP2 A B 35 35.753 -1.806 -36.805 1.00 60.01 O
ATOM 28 O5' A B 35 37.839 -2.214 -35.568 1.00 49.17 O
TER

Atoms:
OP1: (41.594,7.108,-43.917)
OP2: (40.342,4.905,-44.201)
C3': (44.350,4.931,-41.600)
C1': (43.253,3.005,-40.775)
C5': (42.250,6.155,-41.122)
O4': (42.784,4.092,-40.020)
C8: (41.159,1.954,-41.816)
O2': (45.068,2.704,-42.275)
C6: (40.977,-1.286,-40.412)
C5: (41.168,0.042,-40.874)
C4: (42.210,0.759,-40.312)
P: (40.782,6.012,-43.331)
C4': (43.367,5.335,-40.502)
C2': (43.944,3.524,-42.029)
C2: (42.772,-0.924,-39.005)
N1: (41.811,-1.740,-39.456)
N3: (43.058,0.326,-39.362)
N6: (40.035,-2.110,-40.868)
N7: (40.507,0.812,-41.822)
N9: (42.222,1.980,-40.956)
O5': (41.578,5.368,-42.106)
O3': (45.780,5.040,-41.438)
OP1: (35.357,-8.323,-38.288)
OP2: (34.550,-8.160,-40.726)
C3': (36.796,-4.407,-38.549)
C1': (36.946,-3.844,-40.837)
C5': (37.668,-6.666,-39.192)
O6: (35.884,-2.628,-46.597)
O4': (38.006,-4.729,-40.576)
C8: (35.818,-4.832,-42.905)
C2: (37.691,-1.046,-43.977)
C6: (36.356,-2.466,-45.463)
C5: (36.243,-3.306,-44.323)
C4: (36.857,-2.918,-43.157)
P: (35.657,-8.251,-39.743)
C4': (37.932,-5.193,-39.203)
C2': (35.926,-3.901,-39.706)
O2': (35.437,-2.593,-39.546)
N1: (37.114,-1.331,-45.185)
N2: (38.381,0.090,-43.903)
N3: (37.596,-1.819,-42.919)
N7: (35.599,-4.522,-44.156)
N9: (36.555,-3.887,-42.241)
O5': (36.568,-6.974,-40.019)
O3': (37.390,-3.432,-37.687)
Image (generated by PyMOL):
PyMOL image
show in jmol