ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1569:11345

Extra

PDB:
ATOM 1 O3' G A 568 88.569 7.867 42.693 1.00 49.71 O
ATOM 2 P G A 569 87.247 8.212 43.553 1.00 44.58 P
ATOM 3 OP1 G A 569 86.294 7.072 43.362 1.00 44.34 O
ATOM 4 OP2 G A 569 86.811 9.577 43.174 1.00 44.66 O
ATOM 5 O5' G A 569 87.806 8.221 45.068 1.00 44.54 O
ATOM 6 C5' G A 569 87.552 7.143 45.968 1.00 44.33 C
ATOM 7 C4' G A 569 87.865 7.547 47.381 1.00 44.31 C
ATOM 8 O4' G A 569 88.955 8.485 47.368 1.00 44.59 O
ATOM 9 C3' G A 569 86.770 8.308 48.098 1.00 44.11 C
ATOM 10 O3' G A 569 85.754 7.494 48.612 1.00 43.83 O
ATOM 11 C2' G A 569 87.512 9.093 49.153 1.00 44.25 C
ATOM 12 O2' G A 569 87.822 8.261 50.262 1.00 44.17 O
ATOM 13 C1' G A 569 88.805 9.418 48.422 1.00 44.57 C
ATOM 14 N9 G A 569 88.803 10.776 47.860 1.00 44.74 N
ATOM 15 C8 G A 569 88.802 11.127 46.534 1.00 44.87 C
ATOM 16 N7 G A 569 88.801 12.430 46.370 1.00 45.02 N
ATOM 17 C5 G A 569 88.859 12.941 47.664 1.00 44.99 C
ATOM 18 C6 G A 569 88.888 14.281 48.138 1.00 45.12 C
ATOM 19 O6 G A 569 88.889 15.346 47.529 1.00 45.30 O
ATOM 20 N1 G A 569 88.921 14.351 49.504 1.00 45.05 N
ATOM 21 C2 G A 569 88.911 13.265 50.306 1.00 44.88 C
ATOM 22 N2 G A 569 88.949 13.579 51.597 1.00 44.86 N
ATOM 23 N3 G A 569 88.862 12.016 49.899 1.00 44.75 N
ATOM 24 C4 G A 569 88.854 11.928 48.578 1.00 44.82 C
ATOM 25 P U A 570 84.264 8.022 48.457 1.00 43.91 P
ATOM 26 OP1 U A 570 83.339 6.941 48.869 1.00 43.64 O
ATOM 27 OP2 U A 570 84.155 8.572 47.064 1.00 44.04 O
ATOM 28 O5' U A 570 84.221 9.182 49.532 1.00 43.93 O
TER

ATOM 1 O3' G B1344 88.537 13.225 55.961 1.00 52.81 O
ATOM 2 P A B1345 88.514 11.706 55.471 1.00 45.92 P
ATOM 3 OP1 A B1345 88.432 11.734 53.990 1.00 45.95 O
ATOM 4 OP2 A B1345 87.446 11.003 56.230 1.00 45.62 O
ATOM 5 O5' A B1345 89.925 11.169 55.952 1.00 46.13 O
ATOM 6 C5' A B1345 91.005 11.001 55.074 1.00 46.35 C
ATOM 7 C4' A B1345 92.095 10.207 55.750 1.00 46.49 C
ATOM 8 O4' A B1345 92.034 10.448 57.172 1.00 46.48 O
ATOM 9 C3' A B1345 91.953 8.714 55.659 1.00 46.32 C
ATOM 10 O3' A B1345 92.386 8.207 54.447 1.00 46.40 O
ATOM 11 C2' A B1345 92.738 8.214 56.845 1.00 46.43 C
ATOM 12 O2' A B1345 94.129 8.257 56.573 1.00 46.74 O
ATOM 13 C1' A B1345 92.411 9.290 57.879 1.00 46.44 C
ATOM 14 N9 A B1345 91.297 8.912 58.768 1.00 46.17 N
ATOM 15 C8 A B1345 90.182 9.647 58.905 1.00 46.01 C
ATOM 16 N7 A B1345 89.339 9.152 59.751 1.00 45.79 N
ATOM 17 C5 A B1345 89.961 8.024 60.217 1.00 45.82 C
ATOM 18 C6 A B1345 89.553 7.058 61.153 1.00 45.66 C
ATOM 19 N6 A B1345 88.381 7.098 61.792 1.00 45.44 N
ATOM 20 N1 A B1345 90.388 6.027 61.399 1.00 45.76 N
ATOM 21 C2 A B1345 91.550 6.028 60.748 1.00 46.00 C
ATOM 22 N3 A B1345 92.032 6.884 59.855 1.00 46.16 N
ATOM 23 C4 A B1345 91.168 7.864 59.622 1.00 46.05 C
ATOM 24 P C B1346 91.368 7.351 53.599 1.00 37.28 P
ATOM 25 OP1 C B1346 91.735 7.506 52.171 1.00 37.42 O
ATOM 26 OP2 C B1346 89.998 7.744 54.043 1.00 37.01 O
ATOM 27 O5' C B1346 91.711 5.894 54.108 1.00 37.22 O
TER

Atoms:
OP1: (86.294,7.072,43.362)
OP2: (86.811,9.577,43.174)
C3': (86.770,8.308,48.098)
C1': (88.805,9.418,48.422)
C5': (87.552,7.143,45.968)
O6: (88.889,15.346,47.529)
O4': (88.955,8.485,47.368)
C8: (88.802,11.127,46.534)
C2: (88.911,13.265,50.306)
C6: (88.888,14.281,48.138)
C5: (88.859,12.941,47.664)
C4: (88.854,11.928,48.578)
P: (87.247,8.212,43.553)
C4': (87.865,7.547,47.381)
C2': (87.512,9.093,49.153)
O2': (87.822,8.261,50.262)
N1: (88.921,14.351,49.504)
N2: (88.949,13.579,51.597)
N3: (88.862,12.016,49.899)
N7: (88.801,12.430,46.370)
N9: (88.803,10.776,47.860)
O5': (87.806,8.221,45.068)
O3': (85.754,7.494,48.612)
OP1: (88.432,11.734,53.990)
OP2: (87.446,11.003,56.230)
C3': (91.953,8.714,55.659)
C1': (92.411,9.290,57.879)
C5': (91.005,11.001,55.074)
O4': (92.034,10.448,57.172)
C8: (90.182,9.647,58.905)
O2': (94.129,8.257,56.573)
C6: (89.553,7.058,61.153)
C5: (89.961,8.024,60.217)
C4: (91.168,7.864,59.622)
P: (88.514,11.706,55.471)
C4': (92.095,10.207,55.750)
C2': (92.738,8.214,56.845)
C2: (91.550,6.028,60.748)
N1: (90.388,6.027,61.399)
N3: (92.032,6.884,59.855)
N6: (88.381,7.098,61.792)
N7: (89.339,9.152,59.751)
N9: (91.297,8.912,58.768)
O5': (89.925,11.169,55.952)
O3': (92.386,8.207,54.447)
Image (generated by PyMOL):
PyMOL image
show in jmol