Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12083:12124
Extra
PDB:
ATOM 1 O3' A A2082 -24.845 -1.689 82.843 1.00 64.51 O
ATOM 2 P G A2083 -24.828 -0.484 81.795 1.00 56.69 P
ATOM 3 OP1 G A2083 -26.150 0.216 81.952 1.00 57.16 O
ATOM 4 OP2 G A2083 -24.453 -1.047 80.456 1.00 56.46 O
ATOM 5 O5' G A2083 -23.649 0.442 82.331 1.00 56.45 O
ATOM 6 C5' G A2083 -22.753 1.070 81.427 1.00 56.19 C
ATOM 7 C4' G A2083 -21.412 1.279 82.058 1.00 55.86 C
ATOM 8 O4' G A2083 -20.793 -0.008 82.344 1.00 55.59 O
ATOM 9 C3' G A2083 -20.398 2.001 81.207 1.00 55.59 C
ATOM 10 O3' G A2083 -20.564 3.405 81.227 1.00 55.78 O
ATOM 11 C2' G A2083 -19.083 1.538 81.800 1.00 55.22 C
ATOM 12 O2' G A2083 -18.829 2.234 82.999 1.00 55.30 O
ATOM 13 C1' G A2083 -19.404 0.076 82.145 1.00 55.20 C
ATOM 14 N9 G A2083 -19.026 -0.844 81.043 1.00 54.96 N
ATOM 15 C8 G A2083 -19.815 -1.625 80.251 1.00 55.08 C
ATOM 16 N7 G A2083 -19.162 -2.302 79.358 1.00 54.81 N
ATOM 17 C5 G A2083 -17.849 -1.954 79.560 1.00 54.49 C
ATOM 18 C6 G A2083 -16.651 -2.329 78.910 1.00 54.11 C
ATOM 19 O6 G A2083 -16.471 -3.106 77.979 1.00 53.98 O
ATOM 20 N1 G A2083 -15.545 -1.712 79.461 1.00 53.89 N
ATOM 21 C2 G A2083 -15.559 -0.840 80.497 1.00 54.01 C
ATOM 22 N2 G A2083 -14.417 -0.309 80.956 1.00 53.79 N
ATOM 23 N3 G A2083 -16.672 -0.499 81.064 1.00 54.36 N
ATOM 24 C4 G A2083 -17.764 -1.070 80.574 1.00 54.58 C
ATOM 25 P C A2084 -20.589 4.231 79.849 1.00 43.75 P
ATOM 26 OP1 C A2084 -20.851 5.637 80.190 1.00 44.00 O
ATOM 27 OP2 C A2084 -21.528 3.511 78.940 1.00 43.90 O
ATOM 28 O5' C A2084 -19.102 4.096 79.311 1.00 43.30 O
TER
ATOM 1 O3' G B2123 -12.465 1.314 83.261 1.00 47.44 O
ATOM 2 P A B2124 -12.195 2.889 83.166 1.00 46.51 P
ATOM 3 OP1 A B2124 -11.795 3.187 81.769 1.00 46.35 O
ATOM 4 OP2 A B2124 -11.283 3.224 84.280 1.00 46.42 O
ATOM 5 O5' A B2124 -13.621 3.519 83.457 1.00 46.95 O
ATOM 6 C5' A B2124 -14.673 3.402 82.536 1.00 47.13 C
ATOM 7 C4' A B2124 -15.945 3.911 83.138 1.00 47.55 C
ATOM 8 O4' A B2124 -16.182 3.245 84.400 1.00 47.64 O
ATOM 9 C3' A B2124 -15.978 5.383 83.507 1.00 47.75 C
ATOM 10 O3' A B2124 -16.202 6.226 82.390 1.00 47.83 O
ATOM 11 C2' A B2124 -17.120 5.401 84.487 1.00 48.13 C
ATOM 12 O2' A B2124 -18.353 5.255 83.794 1.00 48.39 O
ATOM 13 C1' A B2124 -16.856 4.117 85.265 1.00 47.98 C
ATOM 14 N9 A B2124 -16.005 4.366 86.441 1.00 47.89 N
ATOM 15 C8 A B2124 -14.689 4.017 86.661 1.00 47.54 C
ATOM 16 N7 A B2124 -14.209 4.445 87.806 1.00 47.59 N
ATOM 17 C5 A B2124 -15.279 5.101 88.375 1.00 47.99 C
ATOM 18 C6 A B2124 -15.422 5.765 89.570 1.00 48.23 C
ATOM 19 N6 A B2124 -14.488 5.876 90.481 1.00 48.12 N
ATOM 20 N1 A B2124 -16.583 6.329 89.818 1.00 48.63 N
ATOM 21 C2 A B2124 -17.546 6.225 88.923 1.00 48.76 C
ATOM 22 N3 A B2124 -17.549 5.628 87.759 1.00 48.57 N
ATOM 23 C4 A B2124 -16.371 5.076 87.551 1.00 48.18 C
ATOM 24 P U B2125 -15.483 7.675 82.258 1.00 46.89 P
ATOM 25 OP1 U B2125 -15.861 8.200 80.913 1.00 46.97 O
ATOM 26 OP2 U B2125 -14.045 7.503 82.574 1.00 46.52 O
ATOM 27 O5' U B2125 -16.172 8.531 83.389 1.00 47.27 O
TER
ATOM 2 P G A2083 -24.828 -0.484 81.795 1.00 56.69 P
ATOM 3 OP1 G A2083 -26.150 0.216 81.952 1.00 57.16 O
ATOM 4 OP2 G A2083 -24.453 -1.047 80.456 1.00 56.46 O
ATOM 5 O5' G A2083 -23.649 0.442 82.331 1.00 56.45 O
ATOM 6 C5' G A2083 -22.753 1.070 81.427 1.00 56.19 C
ATOM 7 C4' G A2083 -21.412 1.279 82.058 1.00 55.86 C
ATOM 8 O4' G A2083 -20.793 -0.008 82.344 1.00 55.59 O
ATOM 9 C3' G A2083 -20.398 2.001 81.207 1.00 55.59 C
ATOM 10 O3' G A2083 -20.564 3.405 81.227 1.00 55.78 O
ATOM 11 C2' G A2083 -19.083 1.538 81.800 1.00 55.22 C
ATOM 12 O2' G A2083 -18.829 2.234 82.999 1.00 55.30 O
ATOM 13 C1' G A2083 -19.404 0.076 82.145 1.00 55.20 C
ATOM 14 N9 G A2083 -19.026 -0.844 81.043 1.00 54.96 N
ATOM 15 C8 G A2083 -19.815 -1.625 80.251 1.00 55.08 C
ATOM 16 N7 G A2083 -19.162 -2.302 79.358 1.00 54.81 N
ATOM 17 C5 G A2083 -17.849 -1.954 79.560 1.00 54.49 C
ATOM 18 C6 G A2083 -16.651 -2.329 78.910 1.00 54.11 C
ATOM 19 O6 G A2083 -16.471 -3.106 77.979 1.00 53.98 O
ATOM 20 N1 G A2083 -15.545 -1.712 79.461 1.00 53.89 N
ATOM 21 C2 G A2083 -15.559 -0.840 80.497 1.00 54.01 C
ATOM 22 N2 G A2083 -14.417 -0.309 80.956 1.00 53.79 N
ATOM 23 N3 G A2083 -16.672 -0.499 81.064 1.00 54.36 N
ATOM 24 C4 G A2083 -17.764 -1.070 80.574 1.00 54.58 C
ATOM 25 P C A2084 -20.589 4.231 79.849 1.00 43.75 P
ATOM 26 OP1 C A2084 -20.851 5.637 80.190 1.00 44.00 O
ATOM 27 OP2 C A2084 -21.528 3.511 78.940 1.00 43.90 O
ATOM 28 O5' C A2084 -19.102 4.096 79.311 1.00 43.30 O
TER
ATOM 1 O3' G B2123 -12.465 1.314 83.261 1.00 47.44 O
ATOM 2 P A B2124 -12.195 2.889 83.166 1.00 46.51 P
ATOM 3 OP1 A B2124 -11.795 3.187 81.769 1.00 46.35 O
ATOM 4 OP2 A B2124 -11.283 3.224 84.280 1.00 46.42 O
ATOM 5 O5' A B2124 -13.621 3.519 83.457 1.00 46.95 O
ATOM 6 C5' A B2124 -14.673 3.402 82.536 1.00 47.13 C
ATOM 7 C4' A B2124 -15.945 3.911 83.138 1.00 47.55 C
ATOM 8 O4' A B2124 -16.182 3.245 84.400 1.00 47.64 O
ATOM 9 C3' A B2124 -15.978 5.383 83.507 1.00 47.75 C
ATOM 10 O3' A B2124 -16.202 6.226 82.390 1.00 47.83 O
ATOM 11 C2' A B2124 -17.120 5.401 84.487 1.00 48.13 C
ATOM 12 O2' A B2124 -18.353 5.255 83.794 1.00 48.39 O
ATOM 13 C1' A B2124 -16.856 4.117 85.265 1.00 47.98 C
ATOM 14 N9 A B2124 -16.005 4.366 86.441 1.00 47.89 N
ATOM 15 C8 A B2124 -14.689 4.017 86.661 1.00 47.54 C
ATOM 16 N7 A B2124 -14.209 4.445 87.806 1.00 47.59 N
ATOM 17 C5 A B2124 -15.279 5.101 88.375 1.00 47.99 C
ATOM 18 C6 A B2124 -15.422 5.765 89.570 1.00 48.23 C
ATOM 19 N6 A B2124 -14.488 5.876 90.481 1.00 48.12 N
ATOM 20 N1 A B2124 -16.583 6.329 89.818 1.00 48.63 N
ATOM 21 C2 A B2124 -17.546 6.225 88.923 1.00 48.76 C
ATOM 22 N3 A B2124 -17.549 5.628 87.759 1.00 48.57 N
ATOM 23 C4 A B2124 -16.371 5.076 87.551 1.00 48.18 C
ATOM 24 P U B2125 -15.483 7.675 82.258 1.00 46.89 P
ATOM 25 OP1 U B2125 -15.861 8.200 80.913 1.00 46.97 O
ATOM 26 OP2 U B2125 -14.045 7.503 82.574 1.00 46.52 O
ATOM 27 O5' U B2125 -16.172 8.531 83.389 1.00 47.27 O
TER
Atoms:
OP1: (-26.150,0.216,81.952)
OP2: (-24.453,-1.047,80.456)
C3': (-20.398,2.001,81.207)
C1': (-19.404,0.076,82.145)
C5': (-22.753,1.070,81.427)
O6: (-16.471,-3.106,77.979)
O4': (-20.793,-0.008,82.344)
C8: (-19.815,-1.625,80.251)
C2: (-15.559,-0.840,80.497)
C6: (-16.651,-2.329,78.910)
C5: (-17.849,-1.954,79.560)
C4: (-17.764,-1.070,80.574)
P: (-24.828,-0.484,81.795)
C4': (-21.412,1.279,82.058)
C2': (-19.083,1.538,81.800)
O2': (-18.829,2.234,82.999)
N1: (-15.545,-1.712,79.461)
N2: (-14.417,-0.309,80.956)
N3: (-16.672,-0.499,81.064)
N7: (-19.162,-2.302,79.358)
N9: (-19.026,-0.844,81.043)
O5': (-23.649,0.442,82.331)
O3': (-20.564,3.405,81.227)
OP2: (-24.453,-1.047,80.456)
C3': (-20.398,2.001,81.207)
C1': (-19.404,0.076,82.145)
C5': (-22.753,1.070,81.427)
O6: (-16.471,-3.106,77.979)
O4': (-20.793,-0.008,82.344)
C8: (-19.815,-1.625,80.251)
C2: (-15.559,-0.840,80.497)
C6: (-16.651,-2.329,78.910)
C5: (-17.849,-1.954,79.560)
C4: (-17.764,-1.070,80.574)
P: (-24.828,-0.484,81.795)
C4': (-21.412,1.279,82.058)
C2': (-19.083,1.538,81.800)
O2': (-18.829,2.234,82.999)
N1: (-15.545,-1.712,79.461)
N2: (-14.417,-0.309,80.956)
N3: (-16.672,-0.499,81.064)
N7: (-19.162,-2.302,79.358)
N9: (-19.026,-0.844,81.043)
O5': (-23.649,0.442,82.331)
O3': (-20.564,3.405,81.227)
OP1: (-11.795,3.187,81.769)
OP2: (-11.283,3.224,84.280)
C3': (-15.978,5.383,83.507)
C1': (-16.856,4.117,85.265)
C5': (-14.673,3.402,82.536)
O4': (-16.182,3.245,84.400)
C8: (-14.689,4.017,86.661)
O2': (-18.353,5.255,83.794)
C6: (-15.422,5.765,89.570)
C5: (-15.279,5.101,88.375)
C4: (-16.371,5.076,87.551)
P: (-12.195,2.889,83.166)
C4': (-15.945,3.911,83.138)
C2': (-17.120,5.401,84.487)
C2: (-17.546,6.225,88.923)
N1: (-16.583,6.329,89.818)
N3: (-17.549,5.628,87.759)
N6: (-14.488,5.876,90.481)
N7: (-14.209,4.445,87.806)
N9: (-16.005,4.366,86.441)
O5': (-13.621,3.519,83.457)
O3': (-16.202,6.226,82.390)
OP2: (-11.283,3.224,84.280)
C3': (-15.978,5.383,83.507)
C1': (-16.856,4.117,85.265)
C5': (-14.673,3.402,82.536)
O4': (-16.182,3.245,84.400)
C8: (-14.689,4.017,86.661)
O2': (-18.353,5.255,83.794)
C6: (-15.422,5.765,89.570)
C5: (-15.279,5.101,88.375)
C4: (-16.371,5.076,87.551)
P: (-12.195,2.889,83.166)
C4': (-15.945,3.911,83.138)
C2': (-17.120,5.401,84.487)
C2: (-17.546,6.225,88.923)
N1: (-16.583,6.329,89.818)
N3: (-17.549,5.628,87.759)
N6: (-14.488,5.876,90.481)
N7: (-14.209,4.445,87.806)
N9: (-16.005,4.366,86.441)
O5': (-13.621,3.519,83.457)
O3': (-16.202,6.226,82.390)
Image (generated by PyMOL):