Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12410:12467
Extra
PDB:
ATOM 1 O3' A A2409 14.986 -64.862 54.002 1.00 54.42 O
ATOM 2 P G A2410 16.013 -65.643 53.031 1.00 51.09 P
ATOM 3 OP1 G A2410 16.594 -64.620 52.085 1.00 50.79 O
ATOM 4 OP2 G A2410 15.320 -66.784 52.482 1.00 51.64 O
ATOM 5 O5' G A2410 17.129 -66.138 54.041 1.00 51.03 O
ATOM 6 C5' G A2410 17.958 -65.209 54.738 1.00 50.54 C
ATOM 7 C4' G A2410 18.893 -65.918 55.681 1.00 50.61 C
ATOM 8 O4' G A2410 18.166 -66.407 56.835 1.00 50.74 O
ATOM 9 C3' G A2410 19.560 -67.149 55.132 1.00 51.04 C
ATOM 10 O3' G A2410 20.633 -66.843 54.297 1.00 50.92 O
ATOM 11 C2' G A2410 19.937 -67.916 56.392 1.00 51.16 C
ATOM 12 O2' G A2410 21.074 -67.352 57.016 1.00 50.80 O
ATOM 13 C1' G A2410 18.732 -67.627 57.274 1.00 51.09 C
ATOM 14 N9 G A2410 17.717 -68.661 57.139 1.00 51.58 N
ATOM 15 C8 G A2410 16.474 -68.448 56.587 1.00 51.67 C
ATOM 16 N7 G A2410 15.762 -69.526 56.564 1.00 52.15 N
ATOM 17 C5 G A2410 16.592 -70.505 57.108 1.00 52.38 C
ATOM 18 C6 G A2410 16.346 -71.885 57.308 1.00 52.92 C
ATOM 19 O6 G A2410 15.325 -72.530 57.057 1.00 53.31 O
ATOM 20 N1 G A2410 17.436 -72.525 57.847 1.00 53.02 N
ATOM 21 C2 G A2410 18.621 -71.913 58.170 1.00 52.63 C
ATOM 22 N2 G A2410 19.528 -72.754 58.692 1.00 52.84 N
ATOM 23 N3 G A2410 18.884 -70.615 58.005 1.00 52.12 N
ATOM 24 C4 G A2410 17.819 -69.984 57.470 1.00 52.03 C
ATOM 25 P G A2411 20.895 -67.696 52.975 1.00 52.87 P
ATOM 26 OP1 G A2411 22.150 -67.240 52.392 1.00 52.66 O
ATOM 27 OP2 G A2411 19.668 -67.617 52.146 1.00 53.05 O
ATOM 28 O5' G A2411 21.112 -69.153 53.544 1.00 53.32 O
TER
ATOM 1 O3' G B2466 24.314 -70.923 58.834 1.00 55.16 O
ATOM 2 P A B2467 23.139 -69.895 59.078 1.00 54.34 P
ATOM 3 OP1 A B2467 21.952 -70.678 59.426 1.00 54.70 O
ATOM 4 OP2 A B2467 23.115 -69.005 57.882 1.00 54.10 O
ATOM 5 O5' A B2467 23.602 -69.079 60.360 1.00 53.91 O
ATOM 6 C5' A B2467 24.594 -68.068 60.285 1.00 53.47 C
ATOM 7 C4' A B2467 24.499 -67.115 61.447 1.00 53.06 C
ATOM 8 O4' A B2467 23.309 -66.294 61.298 1.00 52.85 O
ATOM 9 C3' A B2467 24.383 -67.767 62.816 1.00 53.23 C
ATOM 10 O3' A B2467 24.914 -66.877 63.794 1.00 52.83 O
ATOM 11 C2' A B2467 22.876 -67.826 62.999 1.00 53.34 C
ATOM 12 O2' A B2467 22.464 -67.958 64.332 1.00 53.36 O
ATOM 13 C1' A B2467 22.474 -66.479 62.423 1.00 52.92 C
ATOM 14 N9 A B2467 21.087 -66.382 61.971 1.00 53.01 N
ATOM 15 C8 A B2467 20.516 -67.031 60.884 1.00 53.36 C
ATOM 16 N7 A B2467 19.264 -66.680 60.655 1.00 53.36 N
ATOM 17 C5 A B2467 18.997 -65.720 61.640 1.00 52.98 C
ATOM 18 C6 A B2467 17.866 -64.962 61.949 1.00 52.80 C
ATOM 19 N6 A B2467 16.734 -65.052 61.276 1.00 52.98 N
ATOM 20 N1 A B2467 17.921 -64.106 62.982 1.00 52.44 N
ATOM 21 C2 A B2467 19.049 -63.999 63.666 1.00 52.27 C
ATOM 22 N3 A B2467 20.179 -64.649 63.469 1.00 52.40 N
ATOM 23 C4 A B2467 20.110 -65.507 62.440 1.00 52.76 C
ATOM 24 P U B2468 26.495 -66.823 64.114 1.00 49.61 P
ATOM 25 OP1 U B2468 26.698 -65.682 65.061 1.00 49.16 O
ATOM 26 OP2 U B2468 27.220 -66.816 62.804 1.00 49.63 O
ATOM 27 O5' U B2468 26.763 -68.211 64.869 1.00 50.07 O
TER
ATOM 2 P G A2410 16.013 -65.643 53.031 1.00 51.09 P
ATOM 3 OP1 G A2410 16.594 -64.620 52.085 1.00 50.79 O
ATOM 4 OP2 G A2410 15.320 -66.784 52.482 1.00 51.64 O
ATOM 5 O5' G A2410 17.129 -66.138 54.041 1.00 51.03 O
ATOM 6 C5' G A2410 17.958 -65.209 54.738 1.00 50.54 C
ATOM 7 C4' G A2410 18.893 -65.918 55.681 1.00 50.61 C
ATOM 8 O4' G A2410 18.166 -66.407 56.835 1.00 50.74 O
ATOM 9 C3' G A2410 19.560 -67.149 55.132 1.00 51.04 C
ATOM 10 O3' G A2410 20.633 -66.843 54.297 1.00 50.92 O
ATOM 11 C2' G A2410 19.937 -67.916 56.392 1.00 51.16 C
ATOM 12 O2' G A2410 21.074 -67.352 57.016 1.00 50.80 O
ATOM 13 C1' G A2410 18.732 -67.627 57.274 1.00 51.09 C
ATOM 14 N9 G A2410 17.717 -68.661 57.139 1.00 51.58 N
ATOM 15 C8 G A2410 16.474 -68.448 56.587 1.00 51.67 C
ATOM 16 N7 G A2410 15.762 -69.526 56.564 1.00 52.15 N
ATOM 17 C5 G A2410 16.592 -70.505 57.108 1.00 52.38 C
ATOM 18 C6 G A2410 16.346 -71.885 57.308 1.00 52.92 C
ATOM 19 O6 G A2410 15.325 -72.530 57.057 1.00 53.31 O
ATOM 20 N1 G A2410 17.436 -72.525 57.847 1.00 53.02 N
ATOM 21 C2 G A2410 18.621 -71.913 58.170 1.00 52.63 C
ATOM 22 N2 G A2410 19.528 -72.754 58.692 1.00 52.84 N
ATOM 23 N3 G A2410 18.884 -70.615 58.005 1.00 52.12 N
ATOM 24 C4 G A2410 17.819 -69.984 57.470 1.00 52.03 C
ATOM 25 P G A2411 20.895 -67.696 52.975 1.00 52.87 P
ATOM 26 OP1 G A2411 22.150 -67.240 52.392 1.00 52.66 O
ATOM 27 OP2 G A2411 19.668 -67.617 52.146 1.00 53.05 O
ATOM 28 O5' G A2411 21.112 -69.153 53.544 1.00 53.32 O
TER
ATOM 1 O3' G B2466 24.314 -70.923 58.834 1.00 55.16 O
ATOM 2 P A B2467 23.139 -69.895 59.078 1.00 54.34 P
ATOM 3 OP1 A B2467 21.952 -70.678 59.426 1.00 54.70 O
ATOM 4 OP2 A B2467 23.115 -69.005 57.882 1.00 54.10 O
ATOM 5 O5' A B2467 23.602 -69.079 60.360 1.00 53.91 O
ATOM 6 C5' A B2467 24.594 -68.068 60.285 1.00 53.47 C
ATOM 7 C4' A B2467 24.499 -67.115 61.447 1.00 53.06 C
ATOM 8 O4' A B2467 23.309 -66.294 61.298 1.00 52.85 O
ATOM 9 C3' A B2467 24.383 -67.767 62.816 1.00 53.23 C
ATOM 10 O3' A B2467 24.914 -66.877 63.794 1.00 52.83 O
ATOM 11 C2' A B2467 22.876 -67.826 62.999 1.00 53.34 C
ATOM 12 O2' A B2467 22.464 -67.958 64.332 1.00 53.36 O
ATOM 13 C1' A B2467 22.474 -66.479 62.423 1.00 52.92 C
ATOM 14 N9 A B2467 21.087 -66.382 61.971 1.00 53.01 N
ATOM 15 C8 A B2467 20.516 -67.031 60.884 1.00 53.36 C
ATOM 16 N7 A B2467 19.264 -66.680 60.655 1.00 53.36 N
ATOM 17 C5 A B2467 18.997 -65.720 61.640 1.00 52.98 C
ATOM 18 C6 A B2467 17.866 -64.962 61.949 1.00 52.80 C
ATOM 19 N6 A B2467 16.734 -65.052 61.276 1.00 52.98 N
ATOM 20 N1 A B2467 17.921 -64.106 62.982 1.00 52.44 N
ATOM 21 C2 A B2467 19.049 -63.999 63.666 1.00 52.27 C
ATOM 22 N3 A B2467 20.179 -64.649 63.469 1.00 52.40 N
ATOM 23 C4 A B2467 20.110 -65.507 62.440 1.00 52.76 C
ATOM 24 P U B2468 26.495 -66.823 64.114 1.00 49.61 P
ATOM 25 OP1 U B2468 26.698 -65.682 65.061 1.00 49.16 O
ATOM 26 OP2 U B2468 27.220 -66.816 62.804 1.00 49.63 O
ATOM 27 O5' U B2468 26.763 -68.211 64.869 1.00 50.07 O
TER
Atoms:
OP1: (16.594,-64.620,52.085)
OP2: (15.320,-66.784,52.482)
C3': (19.560,-67.149,55.132)
C1': (18.732,-67.627,57.274)
C5': (17.958,-65.209,54.738)
O6: (15.325,-72.530,57.057)
O4': (18.166,-66.407,56.835)
C8: (16.474,-68.448,56.587)
C2: (18.621,-71.913,58.170)
C6: (16.346,-71.885,57.308)
C5: (16.592,-70.505,57.108)
C4: (17.819,-69.984,57.470)
P: (16.013,-65.643,53.031)
C4': (18.893,-65.918,55.681)
C2': (19.937,-67.916,56.392)
O2': (21.074,-67.352,57.016)
N1: (17.436,-72.525,57.847)
N2: (19.528,-72.754,58.692)
N3: (18.884,-70.615,58.005)
N7: (15.762,-69.526,56.564)
N9: (17.717,-68.661,57.139)
O5': (17.129,-66.138,54.041)
O3': (20.633,-66.843,54.297)
OP2: (15.320,-66.784,52.482)
C3': (19.560,-67.149,55.132)
C1': (18.732,-67.627,57.274)
C5': (17.958,-65.209,54.738)
O6: (15.325,-72.530,57.057)
O4': (18.166,-66.407,56.835)
C8: (16.474,-68.448,56.587)
C2: (18.621,-71.913,58.170)
C6: (16.346,-71.885,57.308)
C5: (16.592,-70.505,57.108)
C4: (17.819,-69.984,57.470)
P: (16.013,-65.643,53.031)
C4': (18.893,-65.918,55.681)
C2': (19.937,-67.916,56.392)
O2': (21.074,-67.352,57.016)
N1: (17.436,-72.525,57.847)
N2: (19.528,-72.754,58.692)
N3: (18.884,-70.615,58.005)
N7: (15.762,-69.526,56.564)
N9: (17.717,-68.661,57.139)
O5': (17.129,-66.138,54.041)
O3': (20.633,-66.843,54.297)
OP1: (21.952,-70.678,59.426)
OP2: (23.115,-69.005,57.882)
C3': (24.383,-67.767,62.816)
C1': (22.474,-66.479,62.423)
C5': (24.594,-68.068,60.285)
O4': (23.309,-66.294,61.298)
C8: (20.516,-67.031,60.884)
O2': (22.464,-67.958,64.332)
C6: (17.866,-64.962,61.949)
C5: (18.997,-65.720,61.640)
C4: (20.110,-65.507,62.440)
P: (23.139,-69.895,59.078)
C4': (24.499,-67.115,61.447)
C2': (22.876,-67.826,62.999)
C2: (19.049,-63.999,63.666)
N1: (17.921,-64.106,62.982)
N3: (20.179,-64.649,63.469)
N6: (16.734,-65.052,61.276)
N7: (19.264,-66.680,60.655)
N9: (21.087,-66.382,61.971)
O5': (23.602,-69.079,60.360)
O3': (24.914,-66.877,63.794)
OP2: (23.115,-69.005,57.882)
C3': (24.383,-67.767,62.816)
C1': (22.474,-66.479,62.423)
C5': (24.594,-68.068,60.285)
O4': (23.309,-66.294,61.298)
C8: (20.516,-67.031,60.884)
O2': (22.464,-67.958,64.332)
C6: (17.866,-64.962,61.949)
C5: (18.997,-65.720,61.640)
C4: (20.110,-65.507,62.440)
P: (23.139,-69.895,59.078)
C4': (24.499,-67.115,61.447)
C2': (22.876,-67.826,62.999)
C2: (19.049,-63.999,63.666)
N1: (17.921,-64.106,62.982)
N3: (20.179,-64.649,63.469)
N6: (16.734,-65.052,61.276)
N7: (19.264,-66.680,60.655)
N9: (21.087,-66.382,61.971)
O5': (23.602,-69.079,60.360)
O3': (24.914,-66.877,63.794)
Image (generated by PyMOL):