Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12480:12479
Extra
PDB:
ATOM 1 O3' A A2479 49.432 -43.212 59.147 1.00 38.37 O
ATOM 2 P G A2480 50.795 -43.146 58.270 1.00 40.46 P
ATOM 3 OP1 G A2480 51.883 -43.586 59.167 1.00 40.57 O
ATOM 4 OP2 G A2480 50.882 -41.818 57.647 1.00 40.21 O
ATOM 5 O5' G A2480 50.552 -44.212 57.134 1.00 40.75 O
ATOM 6 C5' G A2480 50.451 -45.589 57.439 1.00 41.05 C
ATOM 7 C4' G A2480 49.034 -45.999 57.656 1.00 41.08 C
ATOM 8 O4' G A2480 48.366 -46.051 56.380 1.00 41.15 O
ATOM 9 C3' G A2480 48.842 -47.380 58.287 1.00 41.37 C
ATOM 10 O3' G A2480 48.084 -47.287 59.480 1.00 41.26 O
ATOM 11 C2' G A2480 48.033 -48.160 57.260 1.00 41.60 C
ATOM 12 O2' G A2480 47.042 -48.958 57.846 1.00 41.74 O
ATOM 13 C1' G A2480 47.417 -47.059 56.436 1.00 41.36 C
ATOM 14 N9 G A2480 47.026 -47.445 55.089 1.00 41.54 N
ATOM 15 C8 G A2480 47.229 -48.644 54.493 1.00 41.89 C
ATOM 16 N7 G A2480 46.683 -48.739 53.313 1.00 42.00 N
ATOM 17 C5 G A2480 46.054 -47.537 53.152 1.00 41.70 C
ATOM 18 C6 G A2480 45.329 -47.078 52.080 1.00 41.67 C
ATOM 19 O6 G A2480 45.130 -47.732 51.080 1.00 41.93 O
ATOM 20 N1 G A2480 44.844 -45.805 52.229 1.00 41.34 N
ATOM 21 C2 G A2480 45.072 -45.055 53.333 1.00 41.07 C
ATOM 22 N2 G A2480 44.560 -43.811 53.416 1.00 40.77 N
ATOM 23 N3 G A2480 45.763 -45.489 54.345 1.00 41.09 N
ATOM 24 C4 G A2480 46.226 -46.738 54.214 1.00 41.41 C
ATOM 25 P U A2481 48.570 -48.099 60.760 1.00 38.04 P
ATOM 26 OP1 U A2481 49.966 -47.702 60.962 1.00 37.99 O
ATOM 27 OP2 U A2481 48.238 -49.529 60.524 1.00 38.40 O
ATOM 28 O5' U A2481 47.679 -47.534 61.953 1.00 37.83 O
TER
ATOM 1 O3' C B2478 43.783 -41.042 56.802 1.00 40.81 O
ATOM 2 P A B2479 45.219 -40.667 56.182 1.00 37.89 P
ATOM 3 OP1 A B2479 45.311 -39.189 56.068 1.00 37.60 O
ATOM 4 OP2 A B2479 45.364 -41.488 54.969 1.00 38.14 O
ATOM 5 O5' A B2479 46.216 -41.171 57.324 1.00 37.94 O
ATOM 6 C5' A B2479 47.423 -40.479 57.636 1.00 37.80 C
ATOM 7 C4' A B2479 48.193 -41.188 58.718 1.00 37.92 C
ATOM 8 O4' A B2479 47.590 -40.873 59.989 1.00 37.77 O
ATOM 9 C3' A B2479 48.200 -42.700 58.631 1.00 38.24 C
ATOM 10 O3' A B2479 49.432 -43.212 59.147 1.00 38.37 O
ATOM 11 C2' A B2479 47.021 -43.078 59.537 1.00 38.25 C
ATOM 12 O2' A B2479 46.996 -44.412 60.040 1.00 38.52 O
ATOM 13 C1' A B2479 47.093 -42.027 60.625 1.00 37.98 C
ATOM 14 N9 A B2479 45.789 -41.650 61.184 1.00 37.84 N
ATOM 15 C8 A B2479 44.892 -40.943 60.439 1.00 37.71 C
ATOM 16 N7 A B2479 43.804 -40.633 61.095 1.00 37.60 N
ATOM 17 C5 A B2479 43.968 -41.174 62.369 1.00 37.67 C
ATOM 18 C6 A B2479 43.142 -41.209 63.529 1.00 37.63 C
ATOM 19 N6 A B2479 41.931 -40.651 63.644 1.00 37.51 N
ATOM 20 N1 A B2479 43.597 -41.842 64.631 1.00 37.75 N
ATOM 21 C2 A B2479 44.797 -42.373 64.529 1.00 37.89 C
ATOM 22 N3 A B2479 45.627 -42.413 63.504 1.00 37.93 N
ATOM 23 C4 A B2479 45.187 -41.784 62.427 1.00 37.82 C
ATOM 24 P G B2480 50.795 -43.146 58.270 1.00 40.46 P
ATOM 25 OP1 G B2480 51.883 -43.586 59.167 1.00 40.57 O
ATOM 26 OP2 G B2480 50.882 -41.818 57.647 1.00 40.21 O
ATOM 27 O5' G B2480 50.552 -44.212 57.134 1.00 40.75 O
TER
ATOM 2 P G A2480 50.795 -43.146 58.270 1.00 40.46 P
ATOM 3 OP1 G A2480 51.883 -43.586 59.167 1.00 40.57 O
ATOM 4 OP2 G A2480 50.882 -41.818 57.647 1.00 40.21 O
ATOM 5 O5' G A2480 50.552 -44.212 57.134 1.00 40.75 O
ATOM 6 C5' G A2480 50.451 -45.589 57.439 1.00 41.05 C
ATOM 7 C4' G A2480 49.034 -45.999 57.656 1.00 41.08 C
ATOM 8 O4' G A2480 48.366 -46.051 56.380 1.00 41.15 O
ATOM 9 C3' G A2480 48.842 -47.380 58.287 1.00 41.37 C
ATOM 10 O3' G A2480 48.084 -47.287 59.480 1.00 41.26 O
ATOM 11 C2' G A2480 48.033 -48.160 57.260 1.00 41.60 C
ATOM 12 O2' G A2480 47.042 -48.958 57.846 1.00 41.74 O
ATOM 13 C1' G A2480 47.417 -47.059 56.436 1.00 41.36 C
ATOM 14 N9 G A2480 47.026 -47.445 55.089 1.00 41.54 N
ATOM 15 C8 G A2480 47.229 -48.644 54.493 1.00 41.89 C
ATOM 16 N7 G A2480 46.683 -48.739 53.313 1.00 42.00 N
ATOM 17 C5 G A2480 46.054 -47.537 53.152 1.00 41.70 C
ATOM 18 C6 G A2480 45.329 -47.078 52.080 1.00 41.67 C
ATOM 19 O6 G A2480 45.130 -47.732 51.080 1.00 41.93 O
ATOM 20 N1 G A2480 44.844 -45.805 52.229 1.00 41.34 N
ATOM 21 C2 G A2480 45.072 -45.055 53.333 1.00 41.07 C
ATOM 22 N2 G A2480 44.560 -43.811 53.416 1.00 40.77 N
ATOM 23 N3 G A2480 45.763 -45.489 54.345 1.00 41.09 N
ATOM 24 C4 G A2480 46.226 -46.738 54.214 1.00 41.41 C
ATOM 25 P U A2481 48.570 -48.099 60.760 1.00 38.04 P
ATOM 26 OP1 U A2481 49.966 -47.702 60.962 1.00 37.99 O
ATOM 27 OP2 U A2481 48.238 -49.529 60.524 1.00 38.40 O
ATOM 28 O5' U A2481 47.679 -47.534 61.953 1.00 37.83 O
TER
ATOM 1 O3' C B2478 43.783 -41.042 56.802 1.00 40.81 O
ATOM 2 P A B2479 45.219 -40.667 56.182 1.00 37.89 P
ATOM 3 OP1 A B2479 45.311 -39.189 56.068 1.00 37.60 O
ATOM 4 OP2 A B2479 45.364 -41.488 54.969 1.00 38.14 O
ATOM 5 O5' A B2479 46.216 -41.171 57.324 1.00 37.94 O
ATOM 6 C5' A B2479 47.423 -40.479 57.636 1.00 37.80 C
ATOM 7 C4' A B2479 48.193 -41.188 58.718 1.00 37.92 C
ATOM 8 O4' A B2479 47.590 -40.873 59.989 1.00 37.77 O
ATOM 9 C3' A B2479 48.200 -42.700 58.631 1.00 38.24 C
ATOM 10 O3' A B2479 49.432 -43.212 59.147 1.00 38.37 O
ATOM 11 C2' A B2479 47.021 -43.078 59.537 1.00 38.25 C
ATOM 12 O2' A B2479 46.996 -44.412 60.040 1.00 38.52 O
ATOM 13 C1' A B2479 47.093 -42.027 60.625 1.00 37.98 C
ATOM 14 N9 A B2479 45.789 -41.650 61.184 1.00 37.84 N
ATOM 15 C8 A B2479 44.892 -40.943 60.439 1.00 37.71 C
ATOM 16 N7 A B2479 43.804 -40.633 61.095 1.00 37.60 N
ATOM 17 C5 A B2479 43.968 -41.174 62.369 1.00 37.67 C
ATOM 18 C6 A B2479 43.142 -41.209 63.529 1.00 37.63 C
ATOM 19 N6 A B2479 41.931 -40.651 63.644 1.00 37.51 N
ATOM 20 N1 A B2479 43.597 -41.842 64.631 1.00 37.75 N
ATOM 21 C2 A B2479 44.797 -42.373 64.529 1.00 37.89 C
ATOM 22 N3 A B2479 45.627 -42.413 63.504 1.00 37.93 N
ATOM 23 C4 A B2479 45.187 -41.784 62.427 1.00 37.82 C
ATOM 24 P G B2480 50.795 -43.146 58.270 1.00 40.46 P
ATOM 25 OP1 G B2480 51.883 -43.586 59.167 1.00 40.57 O
ATOM 26 OP2 G B2480 50.882 -41.818 57.647 1.00 40.21 O
ATOM 27 O5' G B2480 50.552 -44.212 57.134 1.00 40.75 O
TER
Atoms:
OP1: (51.883,-43.586,59.167)
OP2: (50.882,-41.818,57.647)
C3': (48.842,-47.380,58.287)
C1': (47.417,-47.059,56.436)
C5': (50.451,-45.589,57.439)
O6: (45.130,-47.732,51.080)
O4': (48.366,-46.051,56.380)
C8: (47.229,-48.644,54.493)
C2: (45.072,-45.055,53.333)
C6: (45.329,-47.078,52.080)
C5: (46.054,-47.537,53.152)
C4: (46.226,-46.738,54.214)
P: (50.795,-43.146,58.270)
C4': (49.034,-45.999,57.656)
C2': (48.033,-48.160,57.260)
O2': (47.042,-48.958,57.846)
N1: (44.844,-45.805,52.229)
N2: (44.560,-43.811,53.416)
N3: (45.763,-45.489,54.345)
N7: (46.683,-48.739,53.313)
N9: (47.026,-47.445,55.089)
O5': (50.552,-44.212,57.134)
O3': (48.084,-47.287,59.480)
OP2: (50.882,-41.818,57.647)
C3': (48.842,-47.380,58.287)
C1': (47.417,-47.059,56.436)
C5': (50.451,-45.589,57.439)
O6: (45.130,-47.732,51.080)
O4': (48.366,-46.051,56.380)
C8: (47.229,-48.644,54.493)
C2: (45.072,-45.055,53.333)
C6: (45.329,-47.078,52.080)
C5: (46.054,-47.537,53.152)
C4: (46.226,-46.738,54.214)
P: (50.795,-43.146,58.270)
C4': (49.034,-45.999,57.656)
C2': (48.033,-48.160,57.260)
O2': (47.042,-48.958,57.846)
N1: (44.844,-45.805,52.229)
N2: (44.560,-43.811,53.416)
N3: (45.763,-45.489,54.345)
N7: (46.683,-48.739,53.313)
N9: (47.026,-47.445,55.089)
O5': (50.552,-44.212,57.134)
O3': (48.084,-47.287,59.480)
OP1: (45.311,-39.189,56.068)
OP2: (45.364,-41.488,54.969)
C3': (48.200,-42.700,58.631)
C1': (47.093,-42.027,60.625)
C5': (47.423,-40.479,57.636)
O4': (47.590,-40.873,59.989)
C8: (44.892,-40.943,60.439)
O2': (46.996,-44.412,60.040)
C6: (43.142,-41.209,63.529)
C5: (43.968,-41.174,62.369)
C4: (45.187,-41.784,62.427)
P: (45.219,-40.667,56.182)
C4': (48.193,-41.188,58.718)
C2': (47.021,-43.078,59.537)
C2: (44.797,-42.373,64.529)
N1: (43.597,-41.842,64.631)
N3: (45.627,-42.413,63.504)
N6: (41.931,-40.651,63.644)
N7: (43.804,-40.633,61.095)
N9: (45.789,-41.650,61.184)
O5': (46.216,-41.171,57.324)
O3': (49.432,-43.212,59.147)
OP2: (45.364,-41.488,54.969)
C3': (48.200,-42.700,58.631)
C1': (47.093,-42.027,60.625)
C5': (47.423,-40.479,57.636)
O4': (47.590,-40.873,59.989)
C8: (44.892,-40.943,60.439)
O2': (46.996,-44.412,60.040)
C6: (43.142,-41.209,63.529)
C5: (43.968,-41.174,62.369)
C4: (45.187,-41.784,62.427)
P: (45.219,-40.667,56.182)
C4': (48.193,-41.188,58.718)
C2': (47.021,-43.078,59.537)
C2: (44.797,-42.373,64.529)
N1: (43.597,-41.842,64.631)
N3: (45.627,-42.413,63.504)
N6: (41.931,-40.651,63.644)
N7: (43.804,-40.633,61.095)
N9: (45.789,-41.650,61.184)
O5': (46.216,-41.171,57.324)
O3': (49.432,-43.212,59.147)
Image (generated by PyMOL):