Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12572:12573
Extra
PDB:
ATOM 1 O3' A A2571 24.798 -7.052 57.370 1.00 45.82 O
ATOM 2 P A A2572 24.703 -5.620 56.709 1.00 52.83 P
ATOM 3 OP1 A A2572 23.753 -5.750 55.610 1.00 52.99 O
ATOM 4 OP2 A A2572 26.079 -5.173 56.401 1.00 52.74 O
ATOM 5 O5' A A2572 24.128 -4.714 57.889 1.00 52.83 O
ATOM 6 C5' A A2572 22.739 -4.617 58.129 1.00 52.95 C
ATOM 7 C4' A A2572 22.415 -3.493 59.069 1.00 52.96 C
ATOM 8 O4' A A2572 23.156 -3.672 60.307 1.00 52.82 O
ATOM 9 C3' A A2572 22.796 -2.087 58.603 1.00 53.01 C
ATOM 10 O3' A A2572 21.871 -1.516 57.667 1.00 53.19 O
ATOM 11 C2' A A2572 22.887 -1.329 59.930 1.00 52.97 C
ATOM 12 O2' A A2572 21.592 -0.973 60.386 1.00 53.10 O
ATOM 13 C1' A A2572 23.462 -2.411 60.870 1.00 52.82 C
ATOM 14 N9 A A2572 24.922 -2.308 61.000 1.00 52.69 N
ATOM 15 C8 A A2572 25.870 -2.945 60.247 1.00 52.61 C
ATOM 16 N7 A A2572 27.126 -2.670 60.550 1.00 52.51 N
ATOM 17 C5 A A2572 26.982 -1.766 61.569 1.00 52.53 C
ATOM 18 C6 A A2572 27.944 -1.085 62.343 1.00 52.46 C
ATOM 19 N6 A A2572 29.276 -1.212 62.162 1.00 52.37 N
ATOM 20 N1 A A2572 27.459 -0.259 63.317 1.00 52.52 N
ATOM 21 C2 A A2572 26.139 -0.125 63.469 1.00 52.63 C
ATOM 22 N3 A A2572 25.163 -0.730 62.792 1.00 52.69 N
ATOM 23 C4 A A2572 25.642 -1.539 61.851 1.00 52.63 C
ATOM 24 P C A2573 22.380 -0.921 56.266 1.00 93.37 P
ATOM 25 OP1 C A2573 21.205 -0.468 55.528 1.00 93.57 O
ATOM 26 OP2 C A2573 23.234 -1.931 55.647 1.00 93.28 O
ATOM 27 O5' C A2573 23.242 0.326 56.707 1.00 93.32 O
TER
ATOM 1 O3' A B2572 21.871 -1.516 57.667 1.00 53.19 O
ATOM 2 P C B2573 22.380 -0.921 56.266 1.00 93.37 P
ATOM 3 OP1 C B2573 21.205 -0.468 55.528 1.00 93.57 O
ATOM 4 OP2 C B2573 23.234 -1.931 55.647 1.00 93.28 O
ATOM 5 O5' C B2573 23.242 0.326 56.707 1.00 93.32 O
ATOM 6 C5' C B2573 22.627 1.524 57.140 1.00 93.43 C
ATOM 7 C4' C B2573 23.616 2.671 57.188 1.00 93.41 C
ATOM 8 O4' C B2573 24.598 2.441 58.248 1.00 93.24 O
ATOM 9 C3' C B2573 24.480 2.859 55.958 1.00 93.43 C
ATOM 10 O3' C B2573 23.827 3.470 54.868 1.00 93.62 O
ATOM 11 C2' C B2573 25.662 3.644 56.509 1.00 93.34 C
ATOM 12 O2' C B2573 25.282 4.981 56.789 1.00 93.47 O
ATOM 13 C1' C B2573 25.873 2.920 57.837 1.00 93.19 C
ATOM 14 N1 C B2573 26.819 1.743 57.705 1.00 93.03 N
ATOM 15 C2 C B2573 28.141 1.865 58.175 1.00 92.91 C
ATOM 16 O2 C B2573 28.465 2.962 58.686 1.00 92.94 O
ATOM 17 N3 C B2573 29.005 0.781 58.065 1.00 92.78 N
ATOM 18 C4 C B2573 28.617 -0.407 57.499 1.00 92.77 C
ATOM 19 N4 C B2573 29.479 -1.453 57.403 1.00 92.66 N
ATOM 20 C5 C B2573 27.269 -0.557 57.006 1.00 92.89 C
ATOM 21 C6 C B2573 26.455 0.518 57.141 1.00 93.01 C
ATOM 22 P U B2574 24.369 3.156 53.394 1.00 56.44 P
ATOM 23 OP1 U B2574 23.304 3.531 52.404 1.00 56.66 O
ATOM 24 OP2 U B2574 24.850 1.782 53.406 1.00 56.29 O
ATOM 25 O5' U B2574 25.610 4.140 53.269 1.00 56.41 O
TER
ATOM 2 P A A2572 24.703 -5.620 56.709 1.00 52.83 P
ATOM 3 OP1 A A2572 23.753 -5.750 55.610 1.00 52.99 O
ATOM 4 OP2 A A2572 26.079 -5.173 56.401 1.00 52.74 O
ATOM 5 O5' A A2572 24.128 -4.714 57.889 1.00 52.83 O
ATOM 6 C5' A A2572 22.739 -4.617 58.129 1.00 52.95 C
ATOM 7 C4' A A2572 22.415 -3.493 59.069 1.00 52.96 C
ATOM 8 O4' A A2572 23.156 -3.672 60.307 1.00 52.82 O
ATOM 9 C3' A A2572 22.796 -2.087 58.603 1.00 53.01 C
ATOM 10 O3' A A2572 21.871 -1.516 57.667 1.00 53.19 O
ATOM 11 C2' A A2572 22.887 -1.329 59.930 1.00 52.97 C
ATOM 12 O2' A A2572 21.592 -0.973 60.386 1.00 53.10 O
ATOM 13 C1' A A2572 23.462 -2.411 60.870 1.00 52.82 C
ATOM 14 N9 A A2572 24.922 -2.308 61.000 1.00 52.69 N
ATOM 15 C8 A A2572 25.870 -2.945 60.247 1.00 52.61 C
ATOM 16 N7 A A2572 27.126 -2.670 60.550 1.00 52.51 N
ATOM 17 C5 A A2572 26.982 -1.766 61.569 1.00 52.53 C
ATOM 18 C6 A A2572 27.944 -1.085 62.343 1.00 52.46 C
ATOM 19 N6 A A2572 29.276 -1.212 62.162 1.00 52.37 N
ATOM 20 N1 A A2572 27.459 -0.259 63.317 1.00 52.52 N
ATOM 21 C2 A A2572 26.139 -0.125 63.469 1.00 52.63 C
ATOM 22 N3 A A2572 25.163 -0.730 62.792 1.00 52.69 N
ATOM 23 C4 A A2572 25.642 -1.539 61.851 1.00 52.63 C
ATOM 24 P C A2573 22.380 -0.921 56.266 1.00 93.37 P
ATOM 25 OP1 C A2573 21.205 -0.468 55.528 1.00 93.57 O
ATOM 26 OP2 C A2573 23.234 -1.931 55.647 1.00 93.28 O
ATOM 27 O5' C A2573 23.242 0.326 56.707 1.00 93.32 O
TER
ATOM 1 O3' A B2572 21.871 -1.516 57.667 1.00 53.19 O
ATOM 2 P C B2573 22.380 -0.921 56.266 1.00 93.37 P
ATOM 3 OP1 C B2573 21.205 -0.468 55.528 1.00 93.57 O
ATOM 4 OP2 C B2573 23.234 -1.931 55.647 1.00 93.28 O
ATOM 5 O5' C B2573 23.242 0.326 56.707 1.00 93.32 O
ATOM 6 C5' C B2573 22.627 1.524 57.140 1.00 93.43 C
ATOM 7 C4' C B2573 23.616 2.671 57.188 1.00 93.41 C
ATOM 8 O4' C B2573 24.598 2.441 58.248 1.00 93.24 O
ATOM 9 C3' C B2573 24.480 2.859 55.958 1.00 93.43 C
ATOM 10 O3' C B2573 23.827 3.470 54.868 1.00 93.62 O
ATOM 11 C2' C B2573 25.662 3.644 56.509 1.00 93.34 C
ATOM 12 O2' C B2573 25.282 4.981 56.789 1.00 93.47 O
ATOM 13 C1' C B2573 25.873 2.920 57.837 1.00 93.19 C
ATOM 14 N1 C B2573 26.819 1.743 57.705 1.00 93.03 N
ATOM 15 C2 C B2573 28.141 1.865 58.175 1.00 92.91 C
ATOM 16 O2 C B2573 28.465 2.962 58.686 1.00 92.94 O
ATOM 17 N3 C B2573 29.005 0.781 58.065 1.00 92.78 N
ATOM 18 C4 C B2573 28.617 -0.407 57.499 1.00 92.77 C
ATOM 19 N4 C B2573 29.479 -1.453 57.403 1.00 92.66 N
ATOM 20 C5 C B2573 27.269 -0.557 57.006 1.00 92.89 C
ATOM 21 C6 C B2573 26.455 0.518 57.141 1.00 93.01 C
ATOM 22 P U B2574 24.369 3.156 53.394 1.00 56.44 P
ATOM 23 OP1 U B2574 23.304 3.531 52.404 1.00 56.66 O
ATOM 24 OP2 U B2574 24.850 1.782 53.406 1.00 56.29 O
ATOM 25 O5' U B2574 25.610 4.140 53.269 1.00 56.41 O
TER
Atoms:
OP1: (23.753,-5.750,55.610)
OP2: (26.079,-5.173,56.401)
C3': (22.796,-2.087,58.603)
C1': (23.462,-2.411,60.870)
C5': (22.739,-4.617,58.129)
O4': (23.156,-3.672,60.307)
C8: (25.870,-2.945,60.247)
O2': (21.592,-0.973,60.386)
C6: (27.944,-1.085,62.343)
C5: (26.982,-1.766,61.569)
C4: (25.642,-1.539,61.851)
P: (24.703,-5.620,56.709)
C4': (22.415,-3.493,59.069)
C2': (22.887,-1.329,59.930)
C2: (26.139,-0.125,63.469)
N1: (27.459,-0.259,63.317)
N3: (25.163,-0.730,62.792)
N6: (29.276,-1.212,62.162)
N7: (27.126,-2.670,60.550)
N9: (24.922,-2.308,61.000)
O5': (24.128,-4.714,57.889)
O3': (21.871,-1.516,57.667)
OP2: (26.079,-5.173,56.401)
C3': (22.796,-2.087,58.603)
C1': (23.462,-2.411,60.870)
C5': (22.739,-4.617,58.129)
O4': (23.156,-3.672,60.307)
C8: (25.870,-2.945,60.247)
O2': (21.592,-0.973,60.386)
C6: (27.944,-1.085,62.343)
C5: (26.982,-1.766,61.569)
C4: (25.642,-1.539,61.851)
P: (24.703,-5.620,56.709)
C4': (22.415,-3.493,59.069)
C2': (22.887,-1.329,59.930)
C2: (26.139,-0.125,63.469)
N1: (27.459,-0.259,63.317)
N3: (25.163,-0.730,62.792)
N6: (29.276,-1.212,62.162)
N7: (27.126,-2.670,60.550)
N9: (24.922,-2.308,61.000)
O5': (24.128,-4.714,57.889)
O3': (21.871,-1.516,57.667)
C2: (28.141,1.865,58.175)
OP1: (21.205,-0.468,55.528)
OP2: (23.234,-1.931,55.647)
C4: (28.617,-0.407,57.499)
O5': (23.242,0.326,56.707)
C3': (24.480,2.859,55.958)
C1': (25.873,2.920,57.837)
O4': (24.598,2.441,58.248)
C5': (22.627,1.524,57.140)
P: (22.380,-0.921,56.266)
O2: (28.465,2.962,58.686)
C4': (23.616,2.671,57.188)
C2': (25.662,3.644,56.509)
O2': (25.282,4.981,56.789)
N1: (26.819,1.743,57.705)
N3: (29.005,0.781,58.065)
N4: (29.479,-1.453,57.403)
C6: (26.455,0.518,57.141)
C5: (27.269,-0.557,57.006)
O3': (23.827,3.470,54.868)
OP1: (21.205,-0.468,55.528)
OP2: (23.234,-1.931,55.647)
C4: (28.617,-0.407,57.499)
O5': (23.242,0.326,56.707)
C3': (24.480,2.859,55.958)
C1': (25.873,2.920,57.837)
O4': (24.598,2.441,58.248)
C5': (22.627,1.524,57.140)
P: (22.380,-0.921,56.266)
O2: (28.465,2.962,58.686)
C4': (23.616,2.671,57.188)
C2': (25.662,3.644,56.509)
O2': (25.282,4.981,56.789)
N1: (26.819,1.743,57.705)
N3: (29.005,0.781,58.065)
N4: (29.479,-1.453,57.403)
C6: (26.455,0.518,57.141)
C5: (27.269,-0.557,57.006)
O3': (23.827,3.470,54.868)
Image (generated by PyMOL):