ClaRNA

Doublet info:

Details

Nucleotide types: CG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2J00:A547:A548

Extra

PDB:
ATOM 1 O3' G A 546 -18.165 87.986 73.039 1.00 18.62 O
ATOM 2 P C A 547 -17.823 89.425 72.399 1.00 31.63 P
ATOM 3 OP1 C A 547 -19.069 89.764 71.653 1.00 10.66 O
ATOM 4 OP2 C A 547 -16.508 89.427 71.690 1.00 9.05 O
ATOM 5 O5' C A 547 -17.675 90.400 73.650 1.00 29.60 O
ATOM 6 C5' C A 547 -18.836 90.955 74.312 1.00 27.49 C
ATOM 7 C4' C A 547 -18.408 91.939 75.373 1.00 26.73 C
ATOM 8 O4' C A 547 -17.708 91.234 76.423 1.00 27.77 O
ATOM 9 C3' C A 547 -17.430 92.998 74.890 1.00 26.16 C
ATOM 10 O3' C A 547 -18.124 94.114 74.361 1.00 27.13 O
ATOM 11 C2' C A 547 -16.653 93.356 76.151 1.00 26.68 C
ATOM 12 O2' C A 547 -17.312 94.309 76.962 1.00 26.14 O
ATOM 13 C1' C A 547 -16.625 92.018 76.889 1.00 28.01 C
ATOM 14 N1 C A 547 -15.372 91.272 76.679 1.00 22.40 N
ATOM 15 C2 C A 547 -14.361 91.399 77.621 1.00 23.09 C
ATOM 16 O2 C A 547 -14.547 92.135 78.603 1.00 25.53 O
ATOM 17 N3 C A 547 -13.207 90.717 77.452 1.00 24.22 N
ATOM 18 C4 C A 547 -13.055 89.922 76.396 1.00 23.33 C
ATOM 19 N4 C A 547 -11.912 89.244 76.282 1.00 19.90 N
ATOM 20 C5 C A 547 -14.068 89.780 75.415 1.00 22.76 C
ATOM 21 C6 C A 547 -15.198 90.469 75.590 1.00 22.99 C
ATOM 22 P G A 548 -17.613 94.789 73.005 1.00 42.54 P
ATOM 23 OP1 G A 548 -18.104 93.937 71.897 1.00 59.21 O
ATOM 24 OP2 G A 548 -16.152 95.067 73.124 1.00 58.30 O
ATOM 25 O5' G A 548 -18.435 96.153 72.953 1.00 12.59 O
TER

ATOM 1 O3' C B 547 -18.124 94.114 74.361 1.00 27.13 O
ATOM 2 P G B 548 -17.613 94.789 73.005 1.00 42.54 P
ATOM 3 OP1 G B 548 -18.104 93.937 71.897 1.00 59.21 O
ATOM 4 OP2 G B 548 -16.152 95.067 73.124 1.00 58.30 O
ATOM 5 O5' G B 548 -18.435 96.153 72.953 1.00 12.59 O
ATOM 6 C5' G B 548 -17.894 97.382 73.496 1.00 11.73 C
ATOM 7 C4' G B 548 -18.760 98.544 73.093 1.00 13.23 C
ATOM 8 O4' G B 548 -18.709 98.682 71.654 1.00 14.60 O
ATOM 9 C3' G B 548 -20.220 98.314 73.430 1.00 13.12 C
ATOM 10 O3' G B 548 -20.496 98.796 74.743 1.00 12.12 O
ATOM 11 C2' G B 548 -20.953 99.087 72.343 1.00 14.15 C
ATOM 12 O2' G B 548 -21.033 100.454 72.646 1.00 14.58 O
ATOM 13 C1' G B 548 -20.007 98.945 71.148 1.00 15.70 C
ATOM 14 N9 G B 548 -20.352 97.914 70.160 1.00 28.87 N
ATOM 15 C8 G B 548 -19.530 96.909 69.697 1.00 29.55 C
ATOM 16 N7 G B 548 -20.093 96.161 68.784 1.00 30.49 N
ATOM 17 C5 G B 548 -21.367 96.693 68.638 1.00 30.21 C
ATOM 18 C6 G B 548 -22.428 96.302 67.787 1.00 29.32 C
ATOM 19 O6 G B 548 -22.461 95.368 66.967 1.00 30.25 O
ATOM 20 N1 G B 548 -23.538 97.118 67.951 1.00 28.64 N
ATOM 21 C2 G B 548 -23.625 98.164 68.823 1.00 27.30 C
ATOM 22 N2 G B 548 -24.785 98.826 68.827 1.00 28.32 N
ATOM 23 N3 G B 548 -22.649 98.536 69.630 1.00 29.94 N
ATOM 24 C4 G B 548 -21.553 97.767 69.483 1.00 29.34 C
ATOM 25 P U B 549 -21.195 97.829 75.821 1.00 26.20 P
ATOM 26 OP1 U B 549 -20.988 98.344 77.203 1.00 33.55 O
ATOM 27 OP2 U B 549 -20.783 96.433 75.496 1.00 36.89 O
ATOM 28 O5' U B 549 -22.739 98.024 75.514 1.00 0.79 O
TER

Atoms:
C2: (-14.361,91.399,77.621)
OP1: (-19.069,89.764,71.653)
OP2: (-16.508,89.427,71.690)
C4: (-13.055,89.922,76.396)
O5': (-17.675,90.400,73.650)
C3': (-17.430,92.998,74.890)
C1': (-16.625,92.018,76.889)
O4': (-17.708,91.234,76.423)
C5': (-18.836,90.955,74.312)
P: (-17.823,89.425,72.399)
O2: (-14.547,92.135,78.603)
C4': (-18.408,91.939,75.373)
C2': (-16.653,93.356,76.151)
O2': (-17.312,94.309,76.962)
N1: (-15.372,91.272,76.679)
N3: (-13.207,90.717,77.452)
N4: (-11.912,89.244,76.282)
C6: (-15.198,90.469,75.590)
C5: (-14.068,89.780,75.415)
O3': (-18.124,94.114,74.361)
OP1: (-18.104,93.937,71.897)
OP2: (-16.152,95.067,73.124)
C3': (-20.220,98.314,73.430)
C1': (-20.007,98.945,71.148)
C5': (-17.894,97.382,73.496)
O6: (-22.461,95.368,66.967)
O4': (-18.709,98.682,71.654)
C8: (-19.530,96.909,69.697)
C2: (-23.625,98.164,68.823)
C6: (-22.428,96.302,67.787)
C5: (-21.367,96.693,68.638)
C4: (-21.553,97.767,69.483)
P: (-17.613,94.789,73.005)
C4': (-18.760,98.544,73.093)
C2': (-20.953,99.087,72.343)
O2': (-21.033,100.454,72.646)
N1: (-23.538,97.118,67.951)
N2: (-24.785,98.826,68.827)
N3: (-22.649,98.536,69.630)
N7: (-20.093,96.161,68.784)
N9: (-20.352,97.914,70.160)
O5': (-18.435,96.153,72.953)
O3': (-20.496,98.796,74.743)
Image (generated by PyMOL):
PyMOL image
show in jmol