Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A560:A531
Extra
PDB:
ATOM 1 O3' C A 559 -86.346 -97.641 -2.105 1.00 0.01 O
ATOM 2 P G A 560 -85.864 -96.174 -2.408 1.00 0.01 P
ATOM 3 OP1 G A 560 -86.964 -95.287 -2.106 1.00 0.01 O
ATOM 4 OP2 G A 560 -85.289 -96.170 -3.756 1.00 0.01 O
ATOM 5 O5' G A 560 -84.727 -95.978 -1.358 1.00 0.01 O
ATOM 6 C5' G A 560 -85.010 -95.415 -0.103 1.00 0.01 C
ATOM 7 C4' G A 560 -83.761 -95.228 0.696 1.00 0.01 C
ATOM 8 O4' G A 560 -82.878 -96.358 0.506 1.00 0.01 O
ATOM 9 C3' G A 560 -82.912 -94.051 0.307 1.00 0.01 C
ATOM 10 O3' G A 560 -83.422 -92.822 0.785 1.00 0.01 O
ATOM 11 C2' G A 560 -81.559 -94.444 0.888 1.00 0.01 C
ATOM 12 O2' G A 560 -81.521 -94.272 2.300 1.00 0.01 O
ATOM 13 C1' G A 560 -81.542 -95.933 0.581 1.00 0.01 C
ATOM 14 N9 G A 560 -80.902 -96.195 -0.708 1.00 0.01 N
ATOM 15 C8 G A 560 -81.566 -96.270 -1.888 1.00 0.01 C
ATOM 16 N7 G A 560 -80.757 -96.446 -2.883 1.00 0.01 N
ATOM 17 C5 G A 560 -79.493 -96.490 -2.308 1.00 0.01 C
ATOM 18 C6 G A 560 -78.242 -96.664 -2.911 1.00 0.01 C
ATOM 19 O6 G A 560 -77.992 -96.843 -4.087 1.00 0.01 O
ATOM 20 N1 G A 560 -77.210 -96.628 -2.019 1.00 0.01 N
ATOM 21 C2 G A 560 -77.364 -96.452 -0.696 1.00 0.01 C
ATOM 22 N2 G A 560 -76.218 -96.461 -0.039 1.00 0.01 N
ATOM 23 N3 G A 560 -78.514 -96.294 -0.090 1.00 0.01 N
ATOM 24 C4 G A 560 -79.548 -96.327 -0.960 1.00 0.01 C
ATOM 25 P U A 561 -83.276 -91.510 -0.097 1.00 0.01 P
ATOM 26 OP1 U A 561 -84.575 -90.856 -0.102 1.00 0.01 O
ATOM 27 OP2 U A 561 -82.689 -91.930 -1.373 1.00 0.01 O
ATOM 28 O5' U A 561 -82.234 -90.634 0.712 1.00 0.01 O
TER
ATOM 1 O3' C B 530 -75.221 -93.511 3.158 1.00 0.01 O
ATOM 2 P A B 531 -75.883 -94.928 3.379 1.00 0.01 P
ATOM 3 OP1 A B 531 -77.072 -94.990 2.558 1.00 0.01 O
ATOM 4 OP2 A B 531 -76.021 -95.111 4.809 1.00 0.01 O
ATOM 5 O5' A B 531 -74.793 -95.882 2.823 1.00 0.01 O
ATOM 6 C5' A B 531 -73.430 -95.652 3.083 1.00 0.01 C
ATOM 7 C4' A B 531 -72.592 -96.568 2.258 1.00 0.01 C
ATOM 8 O4' A B 531 -72.410 -95.983 0.956 1.00 0.01 O
ATOM 9 C3' A B 531 -71.210 -96.875 2.795 1.00 0.01 C
ATOM 10 O3' A B 531 -70.939 -98.264 2.614 1.00 0.01 O
ATOM 11 C2' A B 531 -70.297 -96.034 1.903 1.00 0.01 C
ATOM 12 O2' A B 531 -69.022 -96.568 1.713 1.00 0.01 O
ATOM 13 C1' A B 531 -71.057 -96.013 0.606 1.00 0.01 C
ATOM 14 N9 A B 531 -70.785 -94.859 -0.241 1.00 0.01 N
ATOM 15 C8 A B 531 -70.618 -94.918 -1.599 1.00 0.01 C
ATOM 16 N7 A B 531 -70.432 -93.755 -2.164 1.00 0.01 N
ATOM 17 C5 A B 531 -70.511 -92.859 -1.109 1.00 0.01 C
ATOM 18 C6 A B 531 -70.406 -91.475 -1.055 1.00 0.01 C
ATOM 19 N6 A B 531 -70.199 -90.723 -2.096 1.00 0.01 N
ATOM 20 N1 A B 531 -70.525 -90.863 0.104 1.00 0.01 N
ATOM 21 C2 A B 531 -70.732 -91.639 1.158 1.00 0.01 C
ATOM 22 N3 A B 531 -70.843 -92.955 1.263 1.00 0.01 N
ATOM 23 C4 A B 531 -70.729 -93.526 0.075 1.00 0.01 C
ATOM 24 P G B 532 -69.847 -98.997 3.519 1.00 0.01 P
ATOM 25 OP1 G B 532 -68.905 -97.985 3.925 1.00 0.01 O
ATOM 26 OP2 G B 532 -69.366-100.164 2.761 1.00 0.01 O
ATOM 27 O5' G B 532 -70.654 -99.472 4.790 1.00 0.01 O
TER
ATOM 2 P G A 560 -85.864 -96.174 -2.408 1.00 0.01 P
ATOM 3 OP1 G A 560 -86.964 -95.287 -2.106 1.00 0.01 O
ATOM 4 OP2 G A 560 -85.289 -96.170 -3.756 1.00 0.01 O
ATOM 5 O5' G A 560 -84.727 -95.978 -1.358 1.00 0.01 O
ATOM 6 C5' G A 560 -85.010 -95.415 -0.103 1.00 0.01 C
ATOM 7 C4' G A 560 -83.761 -95.228 0.696 1.00 0.01 C
ATOM 8 O4' G A 560 -82.878 -96.358 0.506 1.00 0.01 O
ATOM 9 C3' G A 560 -82.912 -94.051 0.307 1.00 0.01 C
ATOM 10 O3' G A 560 -83.422 -92.822 0.785 1.00 0.01 O
ATOM 11 C2' G A 560 -81.559 -94.444 0.888 1.00 0.01 C
ATOM 12 O2' G A 560 -81.521 -94.272 2.300 1.00 0.01 O
ATOM 13 C1' G A 560 -81.542 -95.933 0.581 1.00 0.01 C
ATOM 14 N9 G A 560 -80.902 -96.195 -0.708 1.00 0.01 N
ATOM 15 C8 G A 560 -81.566 -96.270 -1.888 1.00 0.01 C
ATOM 16 N7 G A 560 -80.757 -96.446 -2.883 1.00 0.01 N
ATOM 17 C5 G A 560 -79.493 -96.490 -2.308 1.00 0.01 C
ATOM 18 C6 G A 560 -78.242 -96.664 -2.911 1.00 0.01 C
ATOM 19 O6 G A 560 -77.992 -96.843 -4.087 1.00 0.01 O
ATOM 20 N1 G A 560 -77.210 -96.628 -2.019 1.00 0.01 N
ATOM 21 C2 G A 560 -77.364 -96.452 -0.696 1.00 0.01 C
ATOM 22 N2 G A 560 -76.218 -96.461 -0.039 1.00 0.01 N
ATOM 23 N3 G A 560 -78.514 -96.294 -0.090 1.00 0.01 N
ATOM 24 C4 G A 560 -79.548 -96.327 -0.960 1.00 0.01 C
ATOM 25 P U A 561 -83.276 -91.510 -0.097 1.00 0.01 P
ATOM 26 OP1 U A 561 -84.575 -90.856 -0.102 1.00 0.01 O
ATOM 27 OP2 U A 561 -82.689 -91.930 -1.373 1.00 0.01 O
ATOM 28 O5' U A 561 -82.234 -90.634 0.712 1.00 0.01 O
TER
ATOM 1 O3' C B 530 -75.221 -93.511 3.158 1.00 0.01 O
ATOM 2 P A B 531 -75.883 -94.928 3.379 1.00 0.01 P
ATOM 3 OP1 A B 531 -77.072 -94.990 2.558 1.00 0.01 O
ATOM 4 OP2 A B 531 -76.021 -95.111 4.809 1.00 0.01 O
ATOM 5 O5' A B 531 -74.793 -95.882 2.823 1.00 0.01 O
ATOM 6 C5' A B 531 -73.430 -95.652 3.083 1.00 0.01 C
ATOM 7 C4' A B 531 -72.592 -96.568 2.258 1.00 0.01 C
ATOM 8 O4' A B 531 -72.410 -95.983 0.956 1.00 0.01 O
ATOM 9 C3' A B 531 -71.210 -96.875 2.795 1.00 0.01 C
ATOM 10 O3' A B 531 -70.939 -98.264 2.614 1.00 0.01 O
ATOM 11 C2' A B 531 -70.297 -96.034 1.903 1.00 0.01 C
ATOM 12 O2' A B 531 -69.022 -96.568 1.713 1.00 0.01 O
ATOM 13 C1' A B 531 -71.057 -96.013 0.606 1.00 0.01 C
ATOM 14 N9 A B 531 -70.785 -94.859 -0.241 1.00 0.01 N
ATOM 15 C8 A B 531 -70.618 -94.918 -1.599 1.00 0.01 C
ATOM 16 N7 A B 531 -70.432 -93.755 -2.164 1.00 0.01 N
ATOM 17 C5 A B 531 -70.511 -92.859 -1.109 1.00 0.01 C
ATOM 18 C6 A B 531 -70.406 -91.475 -1.055 1.00 0.01 C
ATOM 19 N6 A B 531 -70.199 -90.723 -2.096 1.00 0.01 N
ATOM 20 N1 A B 531 -70.525 -90.863 0.104 1.00 0.01 N
ATOM 21 C2 A B 531 -70.732 -91.639 1.158 1.00 0.01 C
ATOM 22 N3 A B 531 -70.843 -92.955 1.263 1.00 0.01 N
ATOM 23 C4 A B 531 -70.729 -93.526 0.075 1.00 0.01 C
ATOM 24 P G B 532 -69.847 -98.997 3.519 1.00 0.01 P
ATOM 25 OP1 G B 532 -68.905 -97.985 3.925 1.00 0.01 O
ATOM 26 OP2 G B 532 -69.366-100.164 2.761 1.00 0.01 O
ATOM 27 O5' G B 532 -70.654 -99.472 4.790 1.00 0.01 O
TER
Atoms:
OP1: (-86.964,-95.287,-2.106)
OP2: (-85.289,-96.170,-3.756)
C3': (-82.912,-94.051,0.307)
C1': (-81.542,-95.933,0.581)
C5': (-85.010,-95.415,-0.103)
O6: (-77.992,-96.843,-4.087)
O4': (-82.878,-96.358,0.506)
C8: (-81.566,-96.270,-1.888)
C2: (-77.364,-96.452,-0.696)
C6: (-78.242,-96.664,-2.911)
C5: (-79.493,-96.490,-2.308)
C4: (-79.548,-96.327,-0.960)
P: (-85.864,-96.174,-2.408)
C4': (-83.761,-95.228,0.696)
C2': (-81.559,-94.444,0.888)
O2': (-81.521,-94.272,2.300)
N1: (-77.210,-96.628,-2.019)
N2: (-76.218,-96.461,-0.039)
N3: (-78.514,-96.294,-0.090)
N7: (-80.757,-96.446,-2.883)
N9: (-80.902,-96.195,-0.708)
O5': (-84.727,-95.978,-1.358)
O3': (-83.422,-92.822,0.785)
OP2: (-85.289,-96.170,-3.756)
C3': (-82.912,-94.051,0.307)
C1': (-81.542,-95.933,0.581)
C5': (-85.010,-95.415,-0.103)
O6: (-77.992,-96.843,-4.087)
O4': (-82.878,-96.358,0.506)
C8: (-81.566,-96.270,-1.888)
C2: (-77.364,-96.452,-0.696)
C6: (-78.242,-96.664,-2.911)
C5: (-79.493,-96.490,-2.308)
C4: (-79.548,-96.327,-0.960)
P: (-85.864,-96.174,-2.408)
C4': (-83.761,-95.228,0.696)
C2': (-81.559,-94.444,0.888)
O2': (-81.521,-94.272,2.300)
N1: (-77.210,-96.628,-2.019)
N2: (-76.218,-96.461,-0.039)
N3: (-78.514,-96.294,-0.090)
N7: (-80.757,-96.446,-2.883)
N9: (-80.902,-96.195,-0.708)
O5': (-84.727,-95.978,-1.358)
O3': (-83.422,-92.822,0.785)
OP1: (-77.072,-94.990,2.558)
OP2: (-76.021,-95.111,4.809)
C3': (-71.210,-96.875,2.795)
C1': (-71.057,-96.013,0.606)
C5': (-73.430,-95.652,3.083)
O4': (-72.410,-95.983,0.956)
C8: (-70.618,-94.918,-1.599)
O2': (-69.022,-96.568,1.713)
C6: (-70.406,-91.475,-1.055)
C5: (-70.511,-92.859,-1.109)
C4: (-70.729,-93.526,0.075)
P: (-75.883,-94.928,3.379)
C4': (-72.592,-96.568,2.258)
C2': (-70.297,-96.034,1.903)
C2: (-70.732,-91.639,1.158)
N1: (-70.525,-90.863,0.104)
N3: (-70.843,-92.955,1.263)
N6: (-70.199,-90.723,-2.096)
N7: (-70.432,-93.755,-2.164)
N9: (-70.785,-94.859,-0.241)
O5': (-74.793,-95.882,2.823)
O3': (-70.939,-98.264,2.614)
OP2: (-76.021,-95.111,4.809)
C3': (-71.210,-96.875,2.795)
C1': (-71.057,-96.013,0.606)
C5': (-73.430,-95.652,3.083)
O4': (-72.410,-95.983,0.956)
C8: (-70.618,-94.918,-1.599)
O2': (-69.022,-96.568,1.713)
C6: (-70.406,-91.475,-1.055)
C5: (-70.511,-92.859,-1.109)
C4: (-70.729,-93.526,0.075)
P: (-75.883,-94.928,3.379)
C4': (-72.592,-96.568,2.258)
C2': (-70.297,-96.034,1.903)
C2: (-70.732,-91.639,1.158)
N1: (-70.525,-90.863,0.104)
N3: (-70.843,-92.955,1.263)
N6: (-70.199,-90.723,-2.096)
N7: (-70.432,-93.755,-2.164)
N9: (-70.785,-94.859,-0.241)
O5': (-74.793,-95.882,2.823)
O3': (-70.939,-98.264,2.614)
Image (generated by PyMOL):