Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A388:A389
Extra
PDB:
ATOM 1 O3' G A 387 -95.874 -40.433 61.389 1.00 5.00 O
ATOM 2 P G A 388 -96.680 -39.106 61.794 1.00 6.01 P
ATOM 3 OP1 G A 388 -98.110 -39.322 61.438 1.00 6.01 O
ATOM 4 OP2 G A 388 -95.962 -37.961 61.198 1.00 6.01 O
ATOM 5 O5' G A 388 -96.503 -39.091 63.371 1.00 6.01 O
ATOM 6 C5' G A 388 -97.586 -38.881 64.245 1.00 6.01 C
ATOM 7 C4' G A 388 -97.131 -39.068 65.660 1.00 6.01 C
ATOM 8 O4' G A 388 -97.839 -40.186 66.244 1.00 6.01 O
ATOM 9 C3' G A 388 -95.651 -39.406 65.821 1.00 6.01 C
ATOM 10 O3' G A 388 -94.861 -38.257 65.997 1.00 6.01 O
ATOM 11 C2' G A 388 -95.628 -40.331 67.014 1.00 6.01 C
ATOM 12 O2' G A 388 -95.685 -39.596 68.214 1.00 6.01 O
ATOM 13 C1' G A 388 -96.942 -41.071 66.843 1.00 6.01 C
ATOM 14 N9 G A 388 -96.791 -42.204 65.942 1.00 5.88 N
ATOM 15 C8 G A 388 -96.876 -42.086 64.596 1.00 5.88 C
ATOM 16 N7 G A 388 -96.690 -43.221 64.023 1.00 5.88 N
ATOM 17 C5 G A 388 -96.453 -44.100 65.060 1.00 5.88 C
ATOM 18 C6 G A 388 -96.170 -45.457 65.022 1.00 5.88 C
ATOM 19 O6 G A 388 -96.084 -46.158 64.028 1.00 5.88 O
ATOM 20 N1 G A 388 -95.996 -46.005 66.270 1.00 5.88 N
ATOM 21 C2 G A 388 -96.078 -45.314 67.451 1.00 5.88 C
ATOM 22 N2 G A 388 -95.885 -46.034 68.591 1.00 5.88 N
ATOM 23 N3 G A 388 -96.336 -44.013 67.493 1.00 5.88 N
ATOM 24 C4 G A 388 -96.514 -43.493 66.261 1.00 5.88 C
ATOM 25 P U A 389 -93.277 -38.319 65.781 1.00 10.44 P
ATOM 26 OP1 U A 389 -92.702 -37.091 66.400 1.00 10.44 O
ATOM 27 OP2 U A 389 -93.047 -38.555 64.335 1.00 10.44 O
ATOM 28 O5' U A 389 -92.849 -39.591 66.625 1.00 10.44 O
TER
ATOM 1 O3' G B 388 -94.861 -38.257 65.997 1.00 6.01 O
ATOM 2 P U B 389 -93.277 -38.319 65.781 1.00 10.44 P
ATOM 3 OP1 U B 389 -92.702 -37.091 66.400 1.00 10.44 O
ATOM 4 OP2 U B 389 -93.047 -38.555 64.335 1.00 10.44 O
ATOM 5 O5' U B 389 -92.849 -39.591 66.625 1.00 10.44 O
ATOM 6 C5' U B 389 -92.564 -39.456 67.995 1.00 10.44 C
ATOM 7 C4' U B 389 -91.489 -40.394 68.445 1.00 10.44 C
ATOM 8 O4' U B 389 -91.840 -41.734 68.061 1.00 10.44 O
ATOM 9 C3' U B 389 -90.094 -40.138 67.890 1.00 10.44 C
ATOM 10 O3' U B 389 -89.139 -40.445 68.898 1.00 10.44 O
ATOM 11 C2' U B 389 -89.961 -41.171 66.797 1.00 10.44 C
ATOM 12 O2' U B 389 -88.621 -41.555 66.555 1.00 10.44 O
ATOM 13 C1' U B 389 -90.775 -42.326 67.374 1.00 10.44 C
ATOM 14 N1 U B 389 -91.347 -43.236 66.369 1.00 11.04 N
ATOM 15 C2 U B 389 -90.835 -44.497 66.226 1.00 11.04 C
ATOM 16 O2 U B 389 -89.908 -44.876 66.867 1.00 11.04 O
ATOM 17 N3 U B 389 -91.430 -45.289 65.286 1.00 11.04 N
ATOM 18 C4 U B 389 -92.513 -44.944 64.497 1.00 11.04 C
ATOM 19 O4 U B 389 -92.976 -45.735 63.667 1.00 11.04 O
ATOM 20 C5 U B 389 -93.006 -43.624 64.721 1.00 11.04 C
ATOM 21 C6 U B 389 -92.422 -42.839 65.627 1.00 11.04 C
ATOM 22 P A B 390 -87.964 -39.426 69.260 1.00 0.01 P
ATOM 23 OP1 A B 390 -88.522 -38.068 69.145 1.00 0.01 O
ATOM 24 OP2 A B 390 -86.805 -39.804 68.419 1.00 0.01 O
ATOM 25 O5' A B 390 -87.661 -39.765 70.784 1.00 0.01 O
TER
ATOM 2 P G A 388 -96.680 -39.106 61.794 1.00 6.01 P
ATOM 3 OP1 G A 388 -98.110 -39.322 61.438 1.00 6.01 O
ATOM 4 OP2 G A 388 -95.962 -37.961 61.198 1.00 6.01 O
ATOM 5 O5' G A 388 -96.503 -39.091 63.371 1.00 6.01 O
ATOM 6 C5' G A 388 -97.586 -38.881 64.245 1.00 6.01 C
ATOM 7 C4' G A 388 -97.131 -39.068 65.660 1.00 6.01 C
ATOM 8 O4' G A 388 -97.839 -40.186 66.244 1.00 6.01 O
ATOM 9 C3' G A 388 -95.651 -39.406 65.821 1.00 6.01 C
ATOM 10 O3' G A 388 -94.861 -38.257 65.997 1.00 6.01 O
ATOM 11 C2' G A 388 -95.628 -40.331 67.014 1.00 6.01 C
ATOM 12 O2' G A 388 -95.685 -39.596 68.214 1.00 6.01 O
ATOM 13 C1' G A 388 -96.942 -41.071 66.843 1.00 6.01 C
ATOM 14 N9 G A 388 -96.791 -42.204 65.942 1.00 5.88 N
ATOM 15 C8 G A 388 -96.876 -42.086 64.596 1.00 5.88 C
ATOM 16 N7 G A 388 -96.690 -43.221 64.023 1.00 5.88 N
ATOM 17 C5 G A 388 -96.453 -44.100 65.060 1.00 5.88 C
ATOM 18 C6 G A 388 -96.170 -45.457 65.022 1.00 5.88 C
ATOM 19 O6 G A 388 -96.084 -46.158 64.028 1.00 5.88 O
ATOM 20 N1 G A 388 -95.996 -46.005 66.270 1.00 5.88 N
ATOM 21 C2 G A 388 -96.078 -45.314 67.451 1.00 5.88 C
ATOM 22 N2 G A 388 -95.885 -46.034 68.591 1.00 5.88 N
ATOM 23 N3 G A 388 -96.336 -44.013 67.493 1.00 5.88 N
ATOM 24 C4 G A 388 -96.514 -43.493 66.261 1.00 5.88 C
ATOM 25 P U A 389 -93.277 -38.319 65.781 1.00 10.44 P
ATOM 26 OP1 U A 389 -92.702 -37.091 66.400 1.00 10.44 O
ATOM 27 OP2 U A 389 -93.047 -38.555 64.335 1.00 10.44 O
ATOM 28 O5' U A 389 -92.849 -39.591 66.625 1.00 10.44 O
TER
ATOM 1 O3' G B 388 -94.861 -38.257 65.997 1.00 6.01 O
ATOM 2 P U B 389 -93.277 -38.319 65.781 1.00 10.44 P
ATOM 3 OP1 U B 389 -92.702 -37.091 66.400 1.00 10.44 O
ATOM 4 OP2 U B 389 -93.047 -38.555 64.335 1.00 10.44 O
ATOM 5 O5' U B 389 -92.849 -39.591 66.625 1.00 10.44 O
ATOM 6 C5' U B 389 -92.564 -39.456 67.995 1.00 10.44 C
ATOM 7 C4' U B 389 -91.489 -40.394 68.445 1.00 10.44 C
ATOM 8 O4' U B 389 -91.840 -41.734 68.061 1.00 10.44 O
ATOM 9 C3' U B 389 -90.094 -40.138 67.890 1.00 10.44 C
ATOM 10 O3' U B 389 -89.139 -40.445 68.898 1.00 10.44 O
ATOM 11 C2' U B 389 -89.961 -41.171 66.797 1.00 10.44 C
ATOM 12 O2' U B 389 -88.621 -41.555 66.555 1.00 10.44 O
ATOM 13 C1' U B 389 -90.775 -42.326 67.374 1.00 10.44 C
ATOM 14 N1 U B 389 -91.347 -43.236 66.369 1.00 11.04 N
ATOM 15 C2 U B 389 -90.835 -44.497 66.226 1.00 11.04 C
ATOM 16 O2 U B 389 -89.908 -44.876 66.867 1.00 11.04 O
ATOM 17 N3 U B 389 -91.430 -45.289 65.286 1.00 11.04 N
ATOM 18 C4 U B 389 -92.513 -44.944 64.497 1.00 11.04 C
ATOM 19 O4 U B 389 -92.976 -45.735 63.667 1.00 11.04 O
ATOM 20 C5 U B 389 -93.006 -43.624 64.721 1.00 11.04 C
ATOM 21 C6 U B 389 -92.422 -42.839 65.627 1.00 11.04 C
ATOM 22 P A B 390 -87.964 -39.426 69.260 1.00 0.01 P
ATOM 23 OP1 A B 390 -88.522 -38.068 69.145 1.00 0.01 O
ATOM 24 OP2 A B 390 -86.805 -39.804 68.419 1.00 0.01 O
ATOM 25 O5' A B 390 -87.661 -39.765 70.784 1.00 0.01 O
TER
Atoms:
OP1: (-98.110,-39.322,61.438)
OP2: (-95.962,-37.961,61.198)
C3': (-95.651,-39.406,65.821)
C1': (-96.942,-41.071,66.843)
C5': (-97.586,-38.881,64.245)
O6: (-96.084,-46.158,64.028)
O4': (-97.839,-40.186,66.244)
C8: (-96.876,-42.086,64.596)
C2: (-96.078,-45.314,67.451)
C6: (-96.170,-45.457,65.022)
C5: (-96.453,-44.100,65.060)
C4: (-96.514,-43.493,66.261)
P: (-96.680,-39.106,61.794)
C4': (-97.131,-39.068,65.660)
C2': (-95.628,-40.331,67.014)
O2': (-95.685,-39.596,68.214)
N1: (-95.996,-46.005,66.270)
N2: (-95.885,-46.034,68.591)
N3: (-96.336,-44.013,67.493)
N7: (-96.690,-43.221,64.023)
N9: (-96.791,-42.204,65.942)
O5': (-96.503,-39.091,63.371)
O3': (-94.861,-38.257,65.997)
OP2: (-95.962,-37.961,61.198)
C3': (-95.651,-39.406,65.821)
C1': (-96.942,-41.071,66.843)
C5': (-97.586,-38.881,64.245)
O6: (-96.084,-46.158,64.028)
O4': (-97.839,-40.186,66.244)
C8: (-96.876,-42.086,64.596)
C2: (-96.078,-45.314,67.451)
C6: (-96.170,-45.457,65.022)
C5: (-96.453,-44.100,65.060)
C4: (-96.514,-43.493,66.261)
P: (-96.680,-39.106,61.794)
C4': (-97.131,-39.068,65.660)
C2': (-95.628,-40.331,67.014)
O2': (-95.685,-39.596,68.214)
N1: (-95.996,-46.005,66.270)
N2: (-95.885,-46.034,68.591)
N3: (-96.336,-44.013,67.493)
N7: (-96.690,-43.221,64.023)
N9: (-96.791,-42.204,65.942)
O5': (-96.503,-39.091,63.371)
O3': (-94.861,-38.257,65.997)
C4: (-92.513,-44.944,64.497)
N3: (-91.430,-45.289,65.286)
OP1: (-92.702,-37.091,66.400)
OP2: (-93.047,-38.555,64.335)
C2: (-90.835,-44.497,66.226)
C1': (-90.775,-42.326,67.374)
C3': (-90.094,-40.138,67.890)
O5': (-92.849,-39.591,66.625)
O4': (-91.840,-41.734,68.061)
C5': (-92.564,-39.456,67.995)
P: (-93.277,-38.319,65.781)
C4': (-91.489,-40.394,68.445)
C2': (-89.961,-41.171,66.797)
O2': (-88.621,-41.555,66.555)
N1: (-91.347,-43.236,66.369)
O4: (-92.976,-45.735,63.667)
O2: (-89.908,-44.876,66.867)
C6: (-92.422,-42.839,65.627)
C5: (-93.006,-43.624,64.721)
O3': (-89.139,-40.445,68.898)
N3: (-91.430,-45.289,65.286)
OP1: (-92.702,-37.091,66.400)
OP2: (-93.047,-38.555,64.335)
C2: (-90.835,-44.497,66.226)
C1': (-90.775,-42.326,67.374)
C3': (-90.094,-40.138,67.890)
O5': (-92.849,-39.591,66.625)
O4': (-91.840,-41.734,68.061)
C5': (-92.564,-39.456,67.995)
P: (-93.277,-38.319,65.781)
C4': (-91.489,-40.394,68.445)
C2': (-89.961,-41.171,66.797)
O2': (-88.621,-41.555,66.555)
N1: (-91.347,-43.236,66.369)
O4: (-92.976,-45.735,63.667)
O2: (-89.908,-44.876,66.867)
C6: (-92.422,-42.839,65.627)
C5: (-93.006,-43.624,64.721)
O3': (-89.139,-40.445,68.898)
Image (generated by PyMOL):