Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3MDI:C5:C4
Extra
PDB:
ATOM 1 O3' A A 4 31.134 29.560 2.997 1.00 25.14 O
ATOM 2 P A A 5 30.895 28.141 3.691 1.00 24.12 P
ATOM 3 OP1 A A 5 29.474 28.051 4.116 1.00 26.90 O
ATOM 4 OP2 A A 5 31.999 28.039 4.680 1.00 23.10 O
ATOM 5 O5' A A 5 31.118 27.164 2.470 1.00 21.64 O
ATOM 6 C5' A A 5 32.211 26.263 2.448 1.00 15.70 C
ATOM 7 C4' A A 5 32.679 26.063 1.030 1.00 20.78 C
ATOM 8 O4' A A 5 31.794 25.127 0.353 1.00 22.26 O
ATOM 9 C3' A A 5 32.728 27.311 0.147 1.00 23.97 C
ATOM 10 O3' A A 5 33.945 27.338 -0.594 1.00 23.24 O
ATOM 11 C2' A A 5 31.579 27.113 -0.838 1.00 22.05 C
ATOM 12 O2' A A 5 31.818 27.689 -2.100 1.00 23.44 O
ATOM 13 C1' A A 5 31.542 25.597 -0.958 1.00 23.87 C
ATOM 14 N9 A A 5 30.275 25.020 -1.416 1.00 22.93 N
ATOM 15 C8 A A 5 29.017 25.576 -1.437 1.00 23.36 C
ATOM 16 N7 A A 5 28.095 24.756 -1.895 1.00 25.72 N
ATOM 17 C5 A A 5 28.797 23.595 -2.192 1.00 20.29 C
ATOM 18 C6 A A 5 28.395 22.352 -2.708 1.00 23.21 C
ATOM 19 N6 A A 5 27.134 22.050 -3.042 1.00 19.77 N
ATOM 20 N1 A A 5 29.356 21.418 -2.882 1.00 22.25 N
ATOM 21 C2 A A 5 30.620 21.717 -2.561 1.00 21.48 C
ATOM 22 N3 A A 5 31.119 22.838 -2.065 1.00 18.84 N
ATOM 23 C4 A A 5 30.138 23.745 -1.906 1.00 19.15 C
TER
ATOM 1 O3' A B 3 26.311 30.066 -1.815 1.00 29.85 O
ATOM 2 P A B 4 26.166 28.869 -0.759 1.00 26.30 P
ATOM 3 OP1 A B 4 25.963 27.663 -1.616 1.00 25.44 O
ATOM 4 OP2 A B 4 25.131 29.301 0.217 1.00 25.50 O
ATOM 5 O5' A B 4 27.593 28.756 -0.053 1.00 25.08 O
ATOM 6 C5' A B 4 28.106 29.736 0.841 1.00 26.20 C
ATOM 7 C4' A B 4 29.559 29.489 1.167 1.00 22.91 C
ATOM 8 O4' A B 4 30.391 29.914 0.048 1.00 23.27 O
ATOM 9 C3' A B 4 30.063 30.267 2.384 1.00 24.21 C
ATOM 10 O3' A B 4 31.134 29.560 2.997 1.00 25.14 O
ATOM 11 C2' A B 4 30.630 31.518 1.739 1.00 23.00 C
ATOM 12 O2' A B 4 31.530 32.263 2.536 1.00 22.98 O
ATOM 13 C1' A B 4 31.300 30.896 0.521 1.00 21.28 C
ATOM 14 N9 A B 4 31.611 31.886 -0.508 1.00 21.84 N
ATOM 15 C8 A B 4 31.369 33.239 -0.424 1.00 20.50 C
ATOM 16 N7 A B 4 31.773 33.903 -1.472 1.00 19.13 N
ATOM 17 C5 A B 4 32.337 32.928 -2.287 1.00 20.48 C
ATOM 18 C6 A B 4 32.956 32.995 -3.551 1.00 23.46 C
ATOM 19 N6 A B 4 33.108 34.133 -4.230 1.00 17.92 N
ATOM 20 N1 A B 4 33.400 31.840 -4.096 1.00 19.41 N
ATOM 21 C2 A B 4 33.241 30.705 -3.405 1.00 19.62 C
ATOM 22 N3 A B 4 32.686 30.521 -2.209 1.00 19.68 N
ATOM 23 C4 A B 4 32.247 31.682 -1.704 1.00 19.19 C
ATOM 24 P A B 5 30.895 28.141 3.691 1.00 24.12 P
ATOM 25 OP1 A B 5 29.474 28.051 4.116 1.00 26.90 O
ATOM 26 OP2 A B 5 31.999 28.039 4.680 1.00 23.10 O
ATOM 27 O5' A B 5 31.118 27.164 2.470 1.00 21.64 O
TER
ATOM 2 P A A 5 30.895 28.141 3.691 1.00 24.12 P
ATOM 3 OP1 A A 5 29.474 28.051 4.116 1.00 26.90 O
ATOM 4 OP2 A A 5 31.999 28.039 4.680 1.00 23.10 O
ATOM 5 O5' A A 5 31.118 27.164 2.470 1.00 21.64 O
ATOM 6 C5' A A 5 32.211 26.263 2.448 1.00 15.70 C
ATOM 7 C4' A A 5 32.679 26.063 1.030 1.00 20.78 C
ATOM 8 O4' A A 5 31.794 25.127 0.353 1.00 22.26 O
ATOM 9 C3' A A 5 32.728 27.311 0.147 1.00 23.97 C
ATOM 10 O3' A A 5 33.945 27.338 -0.594 1.00 23.24 O
ATOM 11 C2' A A 5 31.579 27.113 -0.838 1.00 22.05 C
ATOM 12 O2' A A 5 31.818 27.689 -2.100 1.00 23.44 O
ATOM 13 C1' A A 5 31.542 25.597 -0.958 1.00 23.87 C
ATOM 14 N9 A A 5 30.275 25.020 -1.416 1.00 22.93 N
ATOM 15 C8 A A 5 29.017 25.576 -1.437 1.00 23.36 C
ATOM 16 N7 A A 5 28.095 24.756 -1.895 1.00 25.72 N
ATOM 17 C5 A A 5 28.797 23.595 -2.192 1.00 20.29 C
ATOM 18 C6 A A 5 28.395 22.352 -2.708 1.00 23.21 C
ATOM 19 N6 A A 5 27.134 22.050 -3.042 1.00 19.77 N
ATOM 20 N1 A A 5 29.356 21.418 -2.882 1.00 22.25 N
ATOM 21 C2 A A 5 30.620 21.717 -2.561 1.00 21.48 C
ATOM 22 N3 A A 5 31.119 22.838 -2.065 1.00 18.84 N
ATOM 23 C4 A A 5 30.138 23.745 -1.906 1.00 19.15 C
TER
ATOM 1 O3' A B 3 26.311 30.066 -1.815 1.00 29.85 O
ATOM 2 P A B 4 26.166 28.869 -0.759 1.00 26.30 P
ATOM 3 OP1 A B 4 25.963 27.663 -1.616 1.00 25.44 O
ATOM 4 OP2 A B 4 25.131 29.301 0.217 1.00 25.50 O
ATOM 5 O5' A B 4 27.593 28.756 -0.053 1.00 25.08 O
ATOM 6 C5' A B 4 28.106 29.736 0.841 1.00 26.20 C
ATOM 7 C4' A B 4 29.559 29.489 1.167 1.00 22.91 C
ATOM 8 O4' A B 4 30.391 29.914 0.048 1.00 23.27 O
ATOM 9 C3' A B 4 30.063 30.267 2.384 1.00 24.21 C
ATOM 10 O3' A B 4 31.134 29.560 2.997 1.00 25.14 O
ATOM 11 C2' A B 4 30.630 31.518 1.739 1.00 23.00 C
ATOM 12 O2' A B 4 31.530 32.263 2.536 1.00 22.98 O
ATOM 13 C1' A B 4 31.300 30.896 0.521 1.00 21.28 C
ATOM 14 N9 A B 4 31.611 31.886 -0.508 1.00 21.84 N
ATOM 15 C8 A B 4 31.369 33.239 -0.424 1.00 20.50 C
ATOM 16 N7 A B 4 31.773 33.903 -1.472 1.00 19.13 N
ATOM 17 C5 A B 4 32.337 32.928 -2.287 1.00 20.48 C
ATOM 18 C6 A B 4 32.956 32.995 -3.551 1.00 23.46 C
ATOM 19 N6 A B 4 33.108 34.133 -4.230 1.00 17.92 N
ATOM 20 N1 A B 4 33.400 31.840 -4.096 1.00 19.41 N
ATOM 21 C2 A B 4 33.241 30.705 -3.405 1.00 19.62 C
ATOM 22 N3 A B 4 32.686 30.521 -2.209 1.00 19.68 N
ATOM 23 C4 A B 4 32.247 31.682 -1.704 1.00 19.19 C
ATOM 24 P A B 5 30.895 28.141 3.691 1.00 24.12 P
ATOM 25 OP1 A B 5 29.474 28.051 4.116 1.00 26.90 O
ATOM 26 OP2 A B 5 31.999 28.039 4.680 1.00 23.10 O
ATOM 27 O5' A B 5 31.118 27.164 2.470 1.00 21.64 O
TER
Atoms:
OP1: (29.474,28.051,4.116)
OP2: (31.999,28.039,4.680)
C3': (32.728,27.311,0.147)
C1': (31.542,25.597,-0.958)
C5': (32.211,26.263,2.448)
O4': (31.794,25.127,0.353)
C8: (29.017,25.576,-1.437)
O2': (31.818,27.689,-2.100)
C6: (28.395,22.352,-2.708)
C5: (28.797,23.595,-2.192)
C4: (30.138,23.745,-1.906)
P: (30.895,28.141,3.691)
C4': (32.679,26.063,1.030)
C2': (31.579,27.113,-0.838)
C2: (30.620,21.717,-2.561)
N1: (29.356,21.418,-2.882)
N3: (31.119,22.838,-2.065)
N6: (27.134,22.050,-3.042)
N7: (28.095,24.756,-1.895)
N9: (30.275,25.020,-1.416)
O5': (31.118,27.164,2.470)
O3': (33.945,27.338,-0.594)
OP2: (31.999,28.039,4.680)
C3': (32.728,27.311,0.147)
C1': (31.542,25.597,-0.958)
C5': (32.211,26.263,2.448)
O4': (31.794,25.127,0.353)
C8: (29.017,25.576,-1.437)
O2': (31.818,27.689,-2.100)
C6: (28.395,22.352,-2.708)
C5: (28.797,23.595,-2.192)
C4: (30.138,23.745,-1.906)
P: (30.895,28.141,3.691)
C4': (32.679,26.063,1.030)
C2': (31.579,27.113,-0.838)
C2: (30.620,21.717,-2.561)
N1: (29.356,21.418,-2.882)
N3: (31.119,22.838,-2.065)
N6: (27.134,22.050,-3.042)
N7: (28.095,24.756,-1.895)
N9: (30.275,25.020,-1.416)
O5': (31.118,27.164,2.470)
O3': (33.945,27.338,-0.594)
OP1: (25.963,27.663,-1.616)
OP2: (25.131,29.301,0.217)
C3': (30.063,30.267,2.384)
C1': (31.300,30.896,0.521)
C5': (28.106,29.736,0.841)
O4': (30.391,29.914,0.048)
C8: (31.369,33.239,-0.424)
O2': (31.530,32.263,2.536)
C6: (32.956,32.995,-3.551)
C5: (32.337,32.928,-2.287)
C4: (32.247,31.682,-1.704)
P: (26.166,28.869,-0.759)
C4': (29.559,29.489,1.167)
C2': (30.630,31.518,1.739)
C2: (33.241,30.705,-3.405)
N1: (33.400,31.840,-4.096)
N3: (32.686,30.521,-2.209)
N6: (33.108,34.133,-4.230)
N7: (31.773,33.903,-1.472)
N9: (31.611,31.886,-0.508)
O5': (27.593,28.756,-0.053)
O3': (31.134,29.560,2.997)
OP2: (25.131,29.301,0.217)
C3': (30.063,30.267,2.384)
C1': (31.300,30.896,0.521)
C5': (28.106,29.736,0.841)
O4': (30.391,29.914,0.048)
C8: (31.369,33.239,-0.424)
O2': (31.530,32.263,2.536)
C6: (32.956,32.995,-3.551)
C5: (32.337,32.928,-2.287)
C4: (32.247,31.682,-1.704)
P: (26.166,28.869,-0.759)
C4': (29.559,29.489,1.167)
C2': (30.630,31.518,1.739)
C2: (33.241,30.705,-3.405)
N1: (33.400,31.840,-4.096)
N3: (32.686,30.521,-2.209)
N6: (33.108,34.133,-4.230)
N7: (31.773,33.903,-1.472)
N9: (31.611,31.886,-0.508)
O5': (27.593,28.756,-0.053)
O3': (31.134,29.560,2.997)
Image (generated by PyMOL):