Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DLC:Y20:Y12
Extra
PDB:
ATOM 1 O3' A A 19 -2.308 2.212 128.048 1.00 34.84 O
ATOM 2 P A A 20 -3.110 3.384 128.789 1.00 35.22 P
ATOM 3 OP1 A A 20 -3.613 4.313 127.748 1.00 35.09 O
ATOM 4 OP2 A A 20 -2.290 3.895 129.912 1.00 34.59 O
ATOM 5 O5' A A 20 -4.351 2.594 129.417 1.00 34.88 O
ATOM 6 C5' A A 20 -4.581 1.224 129.080 1.00 34.66 C
ATOM 7 C4' A A 20 -5.412 0.518 130.136 1.00 34.61 C
ATOM 8 O4' A A 20 -4.563 -0.118 131.126 1.00 34.46 O
ATOM 9 C3' A A 20 -6.309 1.401 130.989 1.00 34.60 C
ATOM 10 O3' A A 20 -7.441 1.849 130.242 1.00 34.79 O
ATOM 11 C2' A A 20 -6.647 0.433 132.121 1.00 34.40 C
ATOM 12 O2' A A 20 -7.634 -0.523 131.775 1.00 34.41 O
ATOM 13 C1' A A 20 -5.290 -0.240 132.340 1.00 34.24 C
ATOM 14 N9 A A 20 -4.528 0.360 133.437 1.00 33.97 N
ATOM 15 C8 A A 20 -3.528 1.291 133.343 1.00 33.80 C
ATOM 16 N7 A A 20 -3.023 1.657 134.497 1.00 33.63 N
ATOM 17 C5 A A 20 -3.742 0.916 135.419 1.00 33.69 C
ATOM 18 C6 A A 20 -3.693 0.844 136.828 1.00 33.63 C
ATOM 19 N6 A A 20 -2.840 1.561 137.566 1.00 33.52 N
ATOM 20 N1 A A 20 -4.549 -0.002 137.451 1.00 33.74 N
ATOM 21 C2 A A 20 -5.402 -0.723 136.708 1.00 33.74 C
ATOM 22 N3 A A 20 -5.542 -0.737 135.378 1.00 33.78 N
ATOM 23 C4 A A 20 -4.676 0.110 134.785 1.00 33.84 C
ATOM 24 P G A 21 -8.125 3.263 130.568 1.00 34.94 P
ATOM 25 OP1 G A 21 -9.061 3.568 129.461 1.00 34.96 O
ATOM 26 OP2 G A 21 -7.068 4.244 130.918 1.00 34.55 O
ATOM 27 O5' G A 21 -8.983 2.908 131.875 1.00 34.70 O
TER
ATOM 1 O3' C B 11 0.933 5.664 145.245 1.00 33.66 O
ATOM 2 P A B 12 1.899 4.428 144.916 1.00 34.03 P
ATOM 3 OP1 A B 12 1.240 3.200 145.421 1.00 34.18 O
ATOM 4 OP2 A B 12 3.252 4.782 145.398 1.00 34.13 O
ATOM 5 O5' A B 12 1.966 4.377 143.318 1.00 33.94 O
ATOM 6 C5' A B 12 2.060 3.139 142.625 1.00 33.62 C
ATOM 7 C4' A B 12 0.734 2.780 141.977 1.00 33.46 C
ATOM 8 O4' A B 12 0.185 3.932 141.284 1.00 33.26 O
ATOM 9 C3' A B 12 0.836 1.680 140.930 1.00 33.29 C
ATOM 10 O3' A B 12 0.540 0.433 141.536 1.00 33.24 O
ATOM 11 C2' A B 12 -0.208 2.070 139.886 1.00 33.10 C
ATOM 12 O2' A B 12 -1.512 1.617 140.198 1.00 33.08 O
ATOM 13 C1' A B 12 -0.163 3.592 139.954 1.00 33.07 C
ATOM 14 N9 A B 12 0.783 4.228 139.034 1.00 33.01 N
ATOM 15 C8 A B 12 1.930 4.896 139.368 1.00 32.92 C
ATOM 16 N7 A B 12 2.591 5.374 138.342 1.00 32.91 N
ATOM 17 C5 A B 12 1.825 4.997 137.253 1.00 32.96 C
ATOM 18 C6 A B 12 1.981 5.205 135.865 1.00 32.94 C
ATOM 19 N6 A B 12 3.012 5.870 135.339 1.00 32.83 N
ATOM 20 N1 A B 12 1.038 4.700 135.037 1.00 33.20 N
ATOM 21 C2 A B 12 0.002 4.033 135.570 1.00 33.25 C
ATOM 22 N3 A B 12 -0.252 3.779 136.856 1.00 32.94 N
ATOM 23 C4 A B 12 0.704 4.292 137.657 1.00 32.96 C
ATOM 24 P A B 13 1.334 -0.885 141.110 1.00 33.06 P
ATOM 25 OP1 A B 13 1.233 -1.834 142.246 1.00 33.29 O
ATOM 26 OP2 A B 13 2.668 -0.496 140.597 1.00 32.94 O
ATOM 27 O5' A B 13 0.475 -1.426 139.870 1.00 33.18 O
TER
ATOM 2 P A A 20 -3.110 3.384 128.789 1.00 35.22 P
ATOM 3 OP1 A A 20 -3.613 4.313 127.748 1.00 35.09 O
ATOM 4 OP2 A A 20 -2.290 3.895 129.912 1.00 34.59 O
ATOM 5 O5' A A 20 -4.351 2.594 129.417 1.00 34.88 O
ATOM 6 C5' A A 20 -4.581 1.224 129.080 1.00 34.66 C
ATOM 7 C4' A A 20 -5.412 0.518 130.136 1.00 34.61 C
ATOM 8 O4' A A 20 -4.563 -0.118 131.126 1.00 34.46 O
ATOM 9 C3' A A 20 -6.309 1.401 130.989 1.00 34.60 C
ATOM 10 O3' A A 20 -7.441 1.849 130.242 1.00 34.79 O
ATOM 11 C2' A A 20 -6.647 0.433 132.121 1.00 34.40 C
ATOM 12 O2' A A 20 -7.634 -0.523 131.775 1.00 34.41 O
ATOM 13 C1' A A 20 -5.290 -0.240 132.340 1.00 34.24 C
ATOM 14 N9 A A 20 -4.528 0.360 133.437 1.00 33.97 N
ATOM 15 C8 A A 20 -3.528 1.291 133.343 1.00 33.80 C
ATOM 16 N7 A A 20 -3.023 1.657 134.497 1.00 33.63 N
ATOM 17 C5 A A 20 -3.742 0.916 135.419 1.00 33.69 C
ATOM 18 C6 A A 20 -3.693 0.844 136.828 1.00 33.63 C
ATOM 19 N6 A A 20 -2.840 1.561 137.566 1.00 33.52 N
ATOM 20 N1 A A 20 -4.549 -0.002 137.451 1.00 33.74 N
ATOM 21 C2 A A 20 -5.402 -0.723 136.708 1.00 33.74 C
ATOM 22 N3 A A 20 -5.542 -0.737 135.378 1.00 33.78 N
ATOM 23 C4 A A 20 -4.676 0.110 134.785 1.00 33.84 C
ATOM 24 P G A 21 -8.125 3.263 130.568 1.00 34.94 P
ATOM 25 OP1 G A 21 -9.061 3.568 129.461 1.00 34.96 O
ATOM 26 OP2 G A 21 -7.068 4.244 130.918 1.00 34.55 O
ATOM 27 O5' G A 21 -8.983 2.908 131.875 1.00 34.70 O
TER
ATOM 1 O3' C B 11 0.933 5.664 145.245 1.00 33.66 O
ATOM 2 P A B 12 1.899 4.428 144.916 1.00 34.03 P
ATOM 3 OP1 A B 12 1.240 3.200 145.421 1.00 34.18 O
ATOM 4 OP2 A B 12 3.252 4.782 145.398 1.00 34.13 O
ATOM 5 O5' A B 12 1.966 4.377 143.318 1.00 33.94 O
ATOM 6 C5' A B 12 2.060 3.139 142.625 1.00 33.62 C
ATOM 7 C4' A B 12 0.734 2.780 141.977 1.00 33.46 C
ATOM 8 O4' A B 12 0.185 3.932 141.284 1.00 33.26 O
ATOM 9 C3' A B 12 0.836 1.680 140.930 1.00 33.29 C
ATOM 10 O3' A B 12 0.540 0.433 141.536 1.00 33.24 O
ATOM 11 C2' A B 12 -0.208 2.070 139.886 1.00 33.10 C
ATOM 12 O2' A B 12 -1.512 1.617 140.198 1.00 33.08 O
ATOM 13 C1' A B 12 -0.163 3.592 139.954 1.00 33.07 C
ATOM 14 N9 A B 12 0.783 4.228 139.034 1.00 33.01 N
ATOM 15 C8 A B 12 1.930 4.896 139.368 1.00 32.92 C
ATOM 16 N7 A B 12 2.591 5.374 138.342 1.00 32.91 N
ATOM 17 C5 A B 12 1.825 4.997 137.253 1.00 32.96 C
ATOM 18 C6 A B 12 1.981 5.205 135.865 1.00 32.94 C
ATOM 19 N6 A B 12 3.012 5.870 135.339 1.00 32.83 N
ATOM 20 N1 A B 12 1.038 4.700 135.037 1.00 33.20 N
ATOM 21 C2 A B 12 0.002 4.033 135.570 1.00 33.25 C
ATOM 22 N3 A B 12 -0.252 3.779 136.856 1.00 32.94 N
ATOM 23 C4 A B 12 0.704 4.292 137.657 1.00 32.96 C
ATOM 24 P A B 13 1.334 -0.885 141.110 1.00 33.06 P
ATOM 25 OP1 A B 13 1.233 -1.834 142.246 1.00 33.29 O
ATOM 26 OP2 A B 13 2.668 -0.496 140.597 1.00 32.94 O
ATOM 27 O5' A B 13 0.475 -1.426 139.870 1.00 33.18 O
TER
Atoms:
OP1: (-3.613,4.313,127.748)
OP2: (-2.290,3.895,129.912)
C3': (-6.309,1.401,130.989)
C1': (-5.290,-0.240,132.340)
C5': (-4.581,1.224,129.080)
O4': (-4.563,-0.118,131.126)
C8: (-3.528,1.291,133.343)
O2': (-7.634,-0.523,131.775)
C6: (-3.693,0.844,136.828)
C5: (-3.742,0.916,135.419)
C4: (-4.676,0.110,134.785)
P: (-3.110,3.384,128.789)
C4': (-5.412,0.518,130.136)
C2': (-6.647,0.433,132.121)
C2: (-5.402,-0.723,136.708)
N1: (-4.549,-0.002,137.451)
N3: (-5.542,-0.737,135.378)
N6: (-2.840,1.561,137.566)
N7: (-3.023,1.657,134.497)
N9: (-4.528,0.360,133.437)
O5': (-4.351,2.594,129.417)
O3': (-7.441,1.849,130.242)
OP2: (-2.290,3.895,129.912)
C3': (-6.309,1.401,130.989)
C1': (-5.290,-0.240,132.340)
C5': (-4.581,1.224,129.080)
O4': (-4.563,-0.118,131.126)
C8: (-3.528,1.291,133.343)
O2': (-7.634,-0.523,131.775)
C6: (-3.693,0.844,136.828)
C5: (-3.742,0.916,135.419)
C4: (-4.676,0.110,134.785)
P: (-3.110,3.384,128.789)
C4': (-5.412,0.518,130.136)
C2': (-6.647,0.433,132.121)
C2: (-5.402,-0.723,136.708)
N1: (-4.549,-0.002,137.451)
N3: (-5.542,-0.737,135.378)
N6: (-2.840,1.561,137.566)
N7: (-3.023,1.657,134.497)
N9: (-4.528,0.360,133.437)
O5': (-4.351,2.594,129.417)
O3': (-7.441,1.849,130.242)
OP1: (1.240,3.200,145.421)
OP2: (3.252,4.782,145.398)
C3': (0.836,1.680,140.930)
C1': (-0.163,3.592,139.954)
C5': (2.060,3.139,142.625)
O4': (0.185,3.932,141.284)
C8: (1.930,4.896,139.368)
O2': (-1.512,1.617,140.198)
C6: (1.981,5.205,135.865)
C5: (1.825,4.997,137.253)
C4: (0.704,4.292,137.657)
P: (1.899,4.428,144.916)
C4': (0.734,2.780,141.977)
C2': (-0.208,2.070,139.886)
C2: (0.002,4.033,135.570)
N1: (1.038,4.700,135.037)
N3: (-0.252,3.779,136.856)
N6: (3.012,5.870,135.339)
N7: (2.591,5.374,138.342)
N9: (0.783,4.228,139.034)
O5': (1.966,4.377,143.318)
O3': (0.540,0.433,141.536)
OP2: (3.252,4.782,145.398)
C3': (0.836,1.680,140.930)
C1': (-0.163,3.592,139.954)
C5': (2.060,3.139,142.625)
O4': (0.185,3.932,141.284)
C8: (1.930,4.896,139.368)
O2': (-1.512,1.617,140.198)
C6: (1.981,5.205,135.865)
C5: (1.825,4.997,137.253)
C4: (0.704,4.292,137.657)
P: (1.899,4.428,144.916)
C4': (0.734,2.780,141.977)
C2': (-0.208,2.070,139.886)
C2: (0.002,4.033,135.570)
N1: (1.038,4.700,135.037)
N3: (-0.252,3.779,136.856)
N6: (3.012,5.870,135.339)
N7: (2.591,5.374,138.342)
N9: (0.783,4.228,139.034)
O5': (1.966,4.377,143.318)
O3': (0.540,0.433,141.536)
Image (generated by PyMOL):