Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11222:11175
Extra
PDB:
ATOM 1 O3' C A1221 3.874 3.619 -19.036 1.00200.62 O
ATOM 2 P A A1222 4.885 2.496 -19.600 1.00215.90 P
ATOM 3 OP1 A A1222 5.907 2.258 -18.554 1.00215.14 O
ATOM 4 OP2 A A1222 5.335 2.937 -20.947 1.00215.51 O
ATOM 5 O5' A A1222 3.936 1.219 -19.731 1.00216.75 O
ATOM 6 C5' A A1222 3.983 0.156 -18.776 1.00216.82 C
ATOM 7 C4' A A1222 4.148 -1.187 -19.451 1.00216.80 C
ATOM 8 O4' A A1222 3.019 -1.404 -20.349 1.00217.70 O
ATOM 9 C3' A A1222 5.390 -1.305 -20.330 1.00215.84 C
ATOM 10 O3' A A1222 5.750 -2.684 -20.475 1.00215.68 O
ATOM 11 C2' A A1222 4.862 -0.794 -21.651 1.00216.20 C
ATOM 12 O2' A A1222 5.652 -1.128 -22.762 1.00215.61 O
ATOM 13 C1' A A1222 3.493 -1.469 -21.683 1.00217.33 C
ATOM 14 N9 A A1222 2.520 -0.810 -22.556 1.00218.02 N
ATOM 15 C8 A A1222 1.991 0.441 -22.403 1.00218.32 C
ATOM 16 N7 A A1222 1.144 0.778 -23.343 1.00218.95 N
ATOM 17 C5 A A1222 1.111 -0.325 -24.182 1.00219.07 C
ATOM 18 C6 A A1222 0.398 -0.596 -25.368 1.00219.64 C
ATOM 19 N6 A A1222 -0.452 0.264 -25.938 1.00220.23 N
ATOM 20 N1 A A1222 0.592 -1.800 -25.956 1.00219.60 N
ATOM 21 C2 A A1222 1.442 -2.659 -25.380 1.00219.02 C
ATOM 22 N3 A A1222 2.160 -2.517 -24.268 1.00218.45 N
ATOM 23 C4 A A1222 1.951 -1.316 -23.705 1.00218.51 C
ATOM 24 P C A1223 7.097 -3.102 -21.267 1.00163.66 P
ATOM 25 OP1 C A1223 7.361 -4.527 -20.948 1.00163.58 O
ATOM 26 OP2 C A1223 8.131 -2.091 -20.924 1.00162.76 O
ATOM 27 O5' C A1223 6.686 -2.955 -22.817 1.00163.96 O
TER
ATOM 1 O3' G B1174 -1.355 6.607 -32.765 1.00165.95 O
ATOM 2 P A B1175 -2.512 6.236 -31.695 1.00183.00 P
ATOM 3 OP1 A B1175 -3.774 6.046 -32.456 1.00184.00 O
ATOM 4 OP2 A B1175 -2.476 7.268 -30.627 1.00182.89 O
ATOM 5 O5' A B1175 -2.021 4.837 -31.114 1.00182.74 O
ATOM 6 C5' A B1175 -2.421 3.614 -31.718 1.00183.16 C
ATOM 7 C4' A B1175 -2.244 2.455 -30.771 1.00183.12 C
ATOM 8 O4' A B1175 -0.829 2.289 -30.488 1.00182.04 O
ATOM 9 C3' A B1175 -2.909 2.612 -29.402 1.00183.63 C
ATOM 10 O3' A B1175 -4.256 2.148 -29.379 1.00184.73 O
ATOM 11 C2' A B1175 -1.987 1.835 -28.469 1.00182.99 C
ATOM 12 O2' A B1175 -2.277 0.443 -28.521 1.00183.34 O
ATOM 13 C1' A B1175 -0.619 2.071 -29.113 1.00181.90 C
ATOM 14 N9 A B1175 0.070 3.260 -28.560 1.00181.26 N
ATOM 15 C8 A B1175 0.171 4.494 -29.154 1.00181.07 C
ATOM 16 N7 A B1175 0.841 5.382 -28.460 1.00180.48 N
ATOM 17 C5 A B1175 1.222 4.688 -27.323 1.00180.24 C
ATOM 18 C6 A B1175 1.956 5.072 -26.184 1.00179.64 C
ATOM 19 N6 A B1175 2.466 6.290 -25.990 1.00179.15 N
ATOM 20 N1 A B1175 2.163 4.142 -25.233 1.00179.57 N
ATOM 21 C2 A B1175 1.650 2.924 -25.422 1.00180.07 C
ATOM 22 N3 A B1175 0.947 2.440 -26.438 1.00180.66 N
ATOM 23 C4 A B1175 0.760 3.381 -27.373 1.00180.72 C
ATOM 24 P C B1176 -5.454 3.038 -29.995 1.00176.62 P
ATOM 25 OP1 C B1176 -5.018 4.460 -29.954 1.00176.16 O
ATOM 26 OP2 C B1176 -6.695 2.650 -29.279 1.00177.63 O
ATOM 27 O5' C B1176 -5.525 2.535 -31.505 1.00176.71 O
TER
ATOM 2 P A A1222 4.885 2.496 -19.600 1.00215.90 P
ATOM 3 OP1 A A1222 5.907 2.258 -18.554 1.00215.14 O
ATOM 4 OP2 A A1222 5.335 2.937 -20.947 1.00215.51 O
ATOM 5 O5' A A1222 3.936 1.219 -19.731 1.00216.75 O
ATOM 6 C5' A A1222 3.983 0.156 -18.776 1.00216.82 C
ATOM 7 C4' A A1222 4.148 -1.187 -19.451 1.00216.80 C
ATOM 8 O4' A A1222 3.019 -1.404 -20.349 1.00217.70 O
ATOM 9 C3' A A1222 5.390 -1.305 -20.330 1.00215.84 C
ATOM 10 O3' A A1222 5.750 -2.684 -20.475 1.00215.68 O
ATOM 11 C2' A A1222 4.862 -0.794 -21.651 1.00216.20 C
ATOM 12 O2' A A1222 5.652 -1.128 -22.762 1.00215.61 O
ATOM 13 C1' A A1222 3.493 -1.469 -21.683 1.00217.33 C
ATOM 14 N9 A A1222 2.520 -0.810 -22.556 1.00218.02 N
ATOM 15 C8 A A1222 1.991 0.441 -22.403 1.00218.32 C
ATOM 16 N7 A A1222 1.144 0.778 -23.343 1.00218.95 N
ATOM 17 C5 A A1222 1.111 -0.325 -24.182 1.00219.07 C
ATOM 18 C6 A A1222 0.398 -0.596 -25.368 1.00219.64 C
ATOM 19 N6 A A1222 -0.452 0.264 -25.938 1.00220.23 N
ATOM 20 N1 A A1222 0.592 -1.800 -25.956 1.00219.60 N
ATOM 21 C2 A A1222 1.442 -2.659 -25.380 1.00219.02 C
ATOM 22 N3 A A1222 2.160 -2.517 -24.268 1.00218.45 N
ATOM 23 C4 A A1222 1.951 -1.316 -23.705 1.00218.51 C
ATOM 24 P C A1223 7.097 -3.102 -21.267 1.00163.66 P
ATOM 25 OP1 C A1223 7.361 -4.527 -20.948 1.00163.58 O
ATOM 26 OP2 C A1223 8.131 -2.091 -20.924 1.00162.76 O
ATOM 27 O5' C A1223 6.686 -2.955 -22.817 1.00163.96 O
TER
ATOM 1 O3' G B1174 -1.355 6.607 -32.765 1.00165.95 O
ATOM 2 P A B1175 -2.512 6.236 -31.695 1.00183.00 P
ATOM 3 OP1 A B1175 -3.774 6.046 -32.456 1.00184.00 O
ATOM 4 OP2 A B1175 -2.476 7.268 -30.627 1.00182.89 O
ATOM 5 O5' A B1175 -2.021 4.837 -31.114 1.00182.74 O
ATOM 6 C5' A B1175 -2.421 3.614 -31.718 1.00183.16 C
ATOM 7 C4' A B1175 -2.244 2.455 -30.771 1.00183.12 C
ATOM 8 O4' A B1175 -0.829 2.289 -30.488 1.00182.04 O
ATOM 9 C3' A B1175 -2.909 2.612 -29.402 1.00183.63 C
ATOM 10 O3' A B1175 -4.256 2.148 -29.379 1.00184.73 O
ATOM 11 C2' A B1175 -1.987 1.835 -28.469 1.00182.99 C
ATOM 12 O2' A B1175 -2.277 0.443 -28.521 1.00183.34 O
ATOM 13 C1' A B1175 -0.619 2.071 -29.113 1.00181.90 C
ATOM 14 N9 A B1175 0.070 3.260 -28.560 1.00181.26 N
ATOM 15 C8 A B1175 0.171 4.494 -29.154 1.00181.07 C
ATOM 16 N7 A B1175 0.841 5.382 -28.460 1.00180.48 N
ATOM 17 C5 A B1175 1.222 4.688 -27.323 1.00180.24 C
ATOM 18 C6 A B1175 1.956 5.072 -26.184 1.00179.64 C
ATOM 19 N6 A B1175 2.466 6.290 -25.990 1.00179.15 N
ATOM 20 N1 A B1175 2.163 4.142 -25.233 1.00179.57 N
ATOM 21 C2 A B1175 1.650 2.924 -25.422 1.00180.07 C
ATOM 22 N3 A B1175 0.947 2.440 -26.438 1.00180.66 N
ATOM 23 C4 A B1175 0.760 3.381 -27.373 1.00180.72 C
ATOM 24 P C B1176 -5.454 3.038 -29.995 1.00176.62 P
ATOM 25 OP1 C B1176 -5.018 4.460 -29.954 1.00176.16 O
ATOM 26 OP2 C B1176 -6.695 2.650 -29.279 1.00177.63 O
ATOM 27 O5' C B1176 -5.525 2.535 -31.505 1.00176.71 O
TER
Atoms:
OP1: (5.907,2.258,-18.554)
OP2: (5.335,2.937,-20.947)
C3': (5.390,-1.305,-20.330)
C1': (3.493,-1.469,-21.683)
C5': (3.983,0.156,-18.776)
O4': (3.019,-1.404,-20.349)
C8: (1.991,0.441,-22.403)
O2': (5.652,-1.128,-22.762)
C6: (0.398,-0.596,-25.368)
C5: (1.111,-0.325,-24.182)
C4: (1.951,-1.316,-23.705)
P: (4.885,2.496,-19.600)
C4': (4.148,-1.187,-19.451)
C2': (4.862,-0.794,-21.651)
C2: (1.442,-2.659,-25.380)
N1: (0.592,-1.800,-25.956)
N3: (2.160,-2.517,-24.268)
N6: (-0.452,0.264,-25.938)
N7: (1.144,0.778,-23.343)
N9: (2.520,-0.810,-22.556)
O5': (3.936,1.219,-19.731)
O3': (5.750,-2.684,-20.475)
OP2: (5.335,2.937,-20.947)
C3': (5.390,-1.305,-20.330)
C1': (3.493,-1.469,-21.683)
C5': (3.983,0.156,-18.776)
O4': (3.019,-1.404,-20.349)
C8: (1.991,0.441,-22.403)
O2': (5.652,-1.128,-22.762)
C6: (0.398,-0.596,-25.368)
C5: (1.111,-0.325,-24.182)
C4: (1.951,-1.316,-23.705)
P: (4.885,2.496,-19.600)
C4': (4.148,-1.187,-19.451)
C2': (4.862,-0.794,-21.651)
C2: (1.442,-2.659,-25.380)
N1: (0.592,-1.800,-25.956)
N3: (2.160,-2.517,-24.268)
N6: (-0.452,0.264,-25.938)
N7: (1.144,0.778,-23.343)
N9: (2.520,-0.810,-22.556)
O5': (3.936,1.219,-19.731)
O3': (5.750,-2.684,-20.475)
OP1: (-3.774,6.046,-32.456)
OP2: (-2.476,7.268,-30.627)
C3': (-2.909,2.612,-29.402)
C1': (-0.619,2.071,-29.113)
C5': (-2.421,3.614,-31.718)
O4': (-0.829,2.289,-30.488)
C8: (0.171,4.494,-29.154)
O2': (-2.277,0.443,-28.521)
C6: (1.956,5.072,-26.184)
C5: (1.222,4.688,-27.323)
C4: (0.760,3.381,-27.373)
P: (-2.512,6.236,-31.695)
C4': (-2.244,2.455,-30.771)
C2': (-1.987,1.835,-28.469)
C2: (1.650,2.924,-25.422)
N1: (2.163,4.142,-25.233)
N3: (0.947,2.440,-26.438)
N6: (2.466,6.290,-25.990)
N7: (0.841,5.382,-28.460)
N9: (0.070,3.260,-28.560)
O5': (-2.021,4.837,-31.114)
O3': (-4.256,2.148,-29.379)
OP2: (-2.476,7.268,-30.627)
C3': (-2.909,2.612,-29.402)
C1': (-0.619,2.071,-29.113)
C5': (-2.421,3.614,-31.718)
O4': (-0.829,2.289,-30.488)
C8: (0.171,4.494,-29.154)
O2': (-2.277,0.443,-28.521)
C6: (1.956,5.072,-26.184)
C5: (1.222,4.688,-27.323)
C4: (0.760,3.381,-27.373)
P: (-2.512,6.236,-31.695)
C4': (-2.244,2.455,-30.771)
C2': (-1.987,1.835,-28.469)
C2: (1.650,2.924,-25.422)
N1: (2.163,4.142,-25.233)
N3: (0.947,2.440,-26.438)
N6: (2.466,6.290,-25.990)
N7: (0.841,5.382,-28.460)
N9: (0.070,3.260,-28.560)
O5': (-2.021,4.837,-31.114)
O3': (-4.256,2.148,-29.379)
Image (generated by PyMOL):