Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:21009:21008
Extra
PDB:
ATOM 1 O3' A A1008 -54.708 0.994 98.055 1.00 56.93 O
ATOM 2 P A A1009 -53.883 0.766 99.398 1.00 59.16 P
ATOM 3 OP1 A A1009 -53.020 -0.403 99.171 1.00 59.43 O
ATOM 4 OP2 A A1009 -54.820 0.728 100.515 1.00 59.94 O
ATOM 5 O5' A A1009 -53.022 2.080 99.482 1.00 58.26 O
ATOM 6 C5' A A1009 -53.639 3.333 99.647 1.00 57.90 C
ATOM 7 C4' A A1009 -53.340 3.912 101.005 1.00 58.08 C
ATOM 8 O4' A A1009 -51.921 4.200 101.124 1.00 57.57 O
ATOM 9 C3' A A1009 -54.008 5.238 101.311 1.00 57.81 C
ATOM 10 O3' A A1009 -55.359 5.108 101.702 1.00 58.49 O
ATOM 11 C2' A A1009 -53.110 5.836 102.379 1.00 57.72 C
ATOM 12 O2' A A1009 -53.385 5.243 103.643 1.00 58.65 O
ATOM 13 C1' A A1009 -51.732 5.360 101.907 1.00 57.31 C
ATOM 14 N9 A A1009 -51.024 6.374 101.083 1.00 56.31 N
ATOM 15 C8 A A1009 -51.229 6.670 99.754 1.00 55.70 C
ATOM 16 N7 A A1009 -50.469 7.609 99.227 1.00 54.88 N
ATOM 17 C5 A A1009 -49.674 7.947 100.306 1.00 54.95 C
ATOM 18 C6 A A1009 -48.661 8.865 100.396 1.00 54.35 C
ATOM 19 N6 A A1009 -48.286 9.581 99.356 1.00 53.57 N
ATOM 20 N1 A A1009 -48.058 9.012 101.574 1.00 54.63 N
ATOM 21 C2 A A1009 -48.440 8.269 102.601 1.00 55.48 C
ATOM 22 N3 A A1009 -49.380 7.344 102.658 1.00 56.13 N
ATOM 23 C4 A A1009 -49.973 7.217 101.446 1.00 55.81 C
ATOM 24 P C A1010 -56.396 6.154 101.127 1.00 67.68 P
ATOM 25 OP1 C A1010 -55.822 6.623 99.825 1.00 66.75 O
ATOM 26 OP2 C A1010 -56.652 7.146 102.193 1.00 67.81 O
ATOM 27 O5' C A1010 -57.704 5.280 100.865 1.00 68.44 O
TER
ATOM 1 O3' A B1007 -51.412 3.364 96.198 1.00 67.82 O
ATOM 2 P A B1008 -52.382 4.599 95.851 1.00 53.69 P
ATOM 3 OP1 A B1008 -52.049 5.077 94.509 1.00 52.96 O
ATOM 4 OP2 A B1008 -52.326 5.528 96.967 1.00 53.63 O
ATOM 5 O5' A B1008 -53.795 3.941 95.825 1.00 54.43 O
ATOM 6 C5' A B1008 -54.066 2.814 95.030 1.00 54.80 C
ATOM 7 C4' A B1008 -54.840 1.839 95.814 1.00 55.78 C
ATOM 8 O4' A B1008 -55.445 0.895 94.926 1.00 56.17 O
ATOM 9 C3' A B1008 -54.021 1.048 96.815 1.00 56.24 C
ATOM 10 O3' A B1008 -54.708 0.994 98.055 1.00 56.93 O
ATOM 11 C2' A B1008 -53.974 -0.340 96.210 1.00 56.74 C
ATOM 12 O2' A B1008 -53.902 -1.355 97.162 1.00 57.60 O
ATOM 13 C1' A B1008 -55.287 -0.386 95.457 1.00 56.95 C
ATOM 14 N9 A B1008 -55.332 -1.338 94.354 1.00 57.14 N
ATOM 15 C8 A B1008 -54.594 -1.328 93.214 1.00 56.55 C
ATOM 16 N7 A B1008 -54.876 -2.294 92.396 1.00 56.95 N
ATOM 17 C5 A B1008 -55.908 -2.963 93.029 1.00 57.85 C
ATOM 18 C6 A B1008 -56.676 -4.095 92.659 1.00 58.67 C
ATOM 19 N6 A B1008 -56.492 -4.758 91.507 1.00 58.69 N
ATOM 20 N1 A B1008 -57.643 -4.511 93.528 1.00 59.50 N
ATOM 21 C2 A B1008 -57.809 -3.827 94.678 1.00 59.51 C
ATOM 22 N3 A B1008 -57.145 -2.751 95.121 1.00 58.79 N
ATOM 23 C4 A B1008 -56.209 -2.368 94.235 1.00 57.97 C
ATOM 24 P A B1009 -53.883 0.766 99.398 1.00 59.16 P
ATOM 25 OP1 A B1009 -53.020 -0.403 99.171 1.00 59.43 O
ATOM 26 OP2 A B1009 -54.820 0.728 100.515 1.00 59.94 O
ATOM 27 O5' A B1009 -53.022 2.080 99.482 1.00 58.26 O
TER
ATOM 2 P A A1009 -53.883 0.766 99.398 1.00 59.16 P
ATOM 3 OP1 A A1009 -53.020 -0.403 99.171 1.00 59.43 O
ATOM 4 OP2 A A1009 -54.820 0.728 100.515 1.00 59.94 O
ATOM 5 O5' A A1009 -53.022 2.080 99.482 1.00 58.26 O
ATOM 6 C5' A A1009 -53.639 3.333 99.647 1.00 57.90 C
ATOM 7 C4' A A1009 -53.340 3.912 101.005 1.00 58.08 C
ATOM 8 O4' A A1009 -51.921 4.200 101.124 1.00 57.57 O
ATOM 9 C3' A A1009 -54.008 5.238 101.311 1.00 57.81 C
ATOM 10 O3' A A1009 -55.359 5.108 101.702 1.00 58.49 O
ATOM 11 C2' A A1009 -53.110 5.836 102.379 1.00 57.72 C
ATOM 12 O2' A A1009 -53.385 5.243 103.643 1.00 58.65 O
ATOM 13 C1' A A1009 -51.732 5.360 101.907 1.00 57.31 C
ATOM 14 N9 A A1009 -51.024 6.374 101.083 1.00 56.31 N
ATOM 15 C8 A A1009 -51.229 6.670 99.754 1.00 55.70 C
ATOM 16 N7 A A1009 -50.469 7.609 99.227 1.00 54.88 N
ATOM 17 C5 A A1009 -49.674 7.947 100.306 1.00 54.95 C
ATOM 18 C6 A A1009 -48.661 8.865 100.396 1.00 54.35 C
ATOM 19 N6 A A1009 -48.286 9.581 99.356 1.00 53.57 N
ATOM 20 N1 A A1009 -48.058 9.012 101.574 1.00 54.63 N
ATOM 21 C2 A A1009 -48.440 8.269 102.601 1.00 55.48 C
ATOM 22 N3 A A1009 -49.380 7.344 102.658 1.00 56.13 N
ATOM 23 C4 A A1009 -49.973 7.217 101.446 1.00 55.81 C
ATOM 24 P C A1010 -56.396 6.154 101.127 1.00 67.68 P
ATOM 25 OP1 C A1010 -55.822 6.623 99.825 1.00 66.75 O
ATOM 26 OP2 C A1010 -56.652 7.146 102.193 1.00 67.81 O
ATOM 27 O5' C A1010 -57.704 5.280 100.865 1.00 68.44 O
TER
ATOM 1 O3' A B1007 -51.412 3.364 96.198 1.00 67.82 O
ATOM 2 P A B1008 -52.382 4.599 95.851 1.00 53.69 P
ATOM 3 OP1 A B1008 -52.049 5.077 94.509 1.00 52.96 O
ATOM 4 OP2 A B1008 -52.326 5.528 96.967 1.00 53.63 O
ATOM 5 O5' A B1008 -53.795 3.941 95.825 1.00 54.43 O
ATOM 6 C5' A B1008 -54.066 2.814 95.030 1.00 54.80 C
ATOM 7 C4' A B1008 -54.840 1.839 95.814 1.00 55.78 C
ATOM 8 O4' A B1008 -55.445 0.895 94.926 1.00 56.17 O
ATOM 9 C3' A B1008 -54.021 1.048 96.815 1.00 56.24 C
ATOM 10 O3' A B1008 -54.708 0.994 98.055 1.00 56.93 O
ATOM 11 C2' A B1008 -53.974 -0.340 96.210 1.00 56.74 C
ATOM 12 O2' A B1008 -53.902 -1.355 97.162 1.00 57.60 O
ATOM 13 C1' A B1008 -55.287 -0.386 95.457 1.00 56.95 C
ATOM 14 N9 A B1008 -55.332 -1.338 94.354 1.00 57.14 N
ATOM 15 C8 A B1008 -54.594 -1.328 93.214 1.00 56.55 C
ATOM 16 N7 A B1008 -54.876 -2.294 92.396 1.00 56.95 N
ATOM 17 C5 A B1008 -55.908 -2.963 93.029 1.00 57.85 C
ATOM 18 C6 A B1008 -56.676 -4.095 92.659 1.00 58.67 C
ATOM 19 N6 A B1008 -56.492 -4.758 91.507 1.00 58.69 N
ATOM 20 N1 A B1008 -57.643 -4.511 93.528 1.00 59.50 N
ATOM 21 C2 A B1008 -57.809 -3.827 94.678 1.00 59.51 C
ATOM 22 N3 A B1008 -57.145 -2.751 95.121 1.00 58.79 N
ATOM 23 C4 A B1008 -56.209 -2.368 94.235 1.00 57.97 C
ATOM 24 P A B1009 -53.883 0.766 99.398 1.00 59.16 P
ATOM 25 OP1 A B1009 -53.020 -0.403 99.171 1.00 59.43 O
ATOM 26 OP2 A B1009 -54.820 0.728 100.515 1.00 59.94 O
ATOM 27 O5' A B1009 -53.022 2.080 99.482 1.00 58.26 O
TER
Atoms:
OP1: (-53.020,-0.403,99.171)
OP2: (-54.820,0.728,100.515)
C3': (-54.008,5.238,101.311)
C1': (-51.732,5.360,101.907)
C5': (-53.639,3.333,99.647)
O4': (-51.921,4.200,101.124)
C8: (-51.229,6.670,99.754)
O2': (-53.385,5.243,103.643)
C6: (-48.661,8.865,100.396)
C5: (-49.674,7.947,100.306)
C4: (-49.973,7.217,101.446)
P: (-53.883,0.766,99.398)
C4': (-53.340,3.912,101.005)
C2': (-53.110,5.836,102.379)
C2: (-48.440,8.269,102.601)
N1: (-48.058,9.012,101.574)
N3: (-49.380,7.344,102.658)
N6: (-48.286,9.581,99.356)
N7: (-50.469,7.609,99.227)
N9: (-51.024,6.374,101.083)
O5': (-53.022,2.080,99.482)
O3': (-55.359,5.108,101.702)
OP2: (-54.820,0.728,100.515)
C3': (-54.008,5.238,101.311)
C1': (-51.732,5.360,101.907)
C5': (-53.639,3.333,99.647)
O4': (-51.921,4.200,101.124)
C8: (-51.229,6.670,99.754)
O2': (-53.385,5.243,103.643)
C6: (-48.661,8.865,100.396)
C5: (-49.674,7.947,100.306)
C4: (-49.973,7.217,101.446)
P: (-53.883,0.766,99.398)
C4': (-53.340,3.912,101.005)
C2': (-53.110,5.836,102.379)
C2: (-48.440,8.269,102.601)
N1: (-48.058,9.012,101.574)
N3: (-49.380,7.344,102.658)
N6: (-48.286,9.581,99.356)
N7: (-50.469,7.609,99.227)
N9: (-51.024,6.374,101.083)
O5': (-53.022,2.080,99.482)
O3': (-55.359,5.108,101.702)
OP1: (-52.049,5.077,94.509)
OP2: (-52.326,5.528,96.967)
C3': (-54.021,1.048,96.815)
C1': (-55.287,-0.386,95.457)
C5': (-54.066,2.814,95.030)
O4': (-55.445,0.895,94.926)
C8: (-54.594,-1.328,93.214)
O2': (-53.902,-1.355,97.162)
C6: (-56.676,-4.095,92.659)
C5: (-55.908,-2.963,93.029)
C4: (-56.209,-2.368,94.235)
P: (-52.382,4.599,95.851)
C4': (-54.840,1.839,95.814)
C2': (-53.974,-0.340,96.210)
C2: (-57.809,-3.827,94.678)
N1: (-57.643,-4.511,93.528)
N3: (-57.145,-2.751,95.121)
N6: (-56.492,-4.758,91.507)
N7: (-54.876,-2.294,92.396)
N9: (-55.332,-1.338,94.354)
O5': (-53.795,3.941,95.825)
O3': (-54.708,0.994,98.055)
OP2: (-52.326,5.528,96.967)
C3': (-54.021,1.048,96.815)
C1': (-55.287,-0.386,95.457)
C5': (-54.066,2.814,95.030)
O4': (-55.445,0.895,94.926)
C8: (-54.594,-1.328,93.214)
O2': (-53.902,-1.355,97.162)
C6: (-56.676,-4.095,92.659)
C5: (-55.908,-2.963,93.029)
C4: (-56.209,-2.368,94.235)
P: (-52.382,4.599,95.851)
C4': (-54.840,1.839,95.814)
C2': (-53.974,-0.340,96.210)
C2: (-57.809,-3.827,94.678)
N1: (-57.643,-4.511,93.528)
N3: (-57.145,-2.751,95.121)
N6: (-56.492,-4.758,91.507)
N7: (-54.876,-2.294,92.396)
N9: (-55.332,-1.338,94.354)
O5': (-53.795,3.941,95.825)
O3': (-54.708,0.994,98.055)
Image (generated by PyMOL):