Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0645:0651
Extra
PDB:
ATOM 1 O3' G A 644 24.680 91.293 44.943 1.00 48.85 O
ATOM 2 P G A 645 24.714 89.946 44.054 1.00 49.11 P
ATOM 3 OP1 G A 645 23.438 89.877 43.310 1.00 50.57 O
ATOM 4 OP2 G A 645 25.120 88.804 44.903 1.00 48.53 O
ATOM 5 O5' G A 645 25.875 90.204 42.990 1.00 48.14 O
ATOM 6 C5' G A 645 25.709 91.178 41.938 1.00 46.51 C
ATOM 7 C4' G A 645 26.857 91.099 40.955 1.00 46.79 C
ATOM 8 O4' G A 645 28.095 91.446 41.617 1.00 45.30 O
ATOM 9 C3' G A 645 27.141 89.737 40.343 1.00 46.99 C
ATOM 10 O3' G A 645 26.255 89.471 39.254 1.00 49.57 O
ATOM 11 C2' G A 645 28.598 89.872 39.905 1.00 44.80 C
ATOM 12 O2' G A 645 28.791 90.573 38.697 1.00 44.57 O
ATOM 13 C1' G A 645 29.167 90.735 41.025 1.00 44.21 C
ATOM 14 N9 G A 645 29.847 89.974 42.063 1.00 43.24 N
ATOM 15 C8 G A 645 29.348 89.604 43.286 1.00 44.30 C
ATOM 16 N7 G A 645 30.210 88.949 44.012 1.00 44.52 N
ATOM 17 C5 G A 645 31.342 88.877 43.216 1.00 42.09 C
ATOM 18 C6 G A 645 32.592 88.280 43.466 1.00 42.47 C
ATOM 19 O6 G A 645 32.964 87.689 44.483 1.00 41.34 O
ATOM 20 N1 G A 645 33.456 88.422 42.379 1.00 42.61 N
ATOM 21 C2 G A 645 33.144 89.063 41.201 1.00 42.25 C
ATOM 22 N2 G A 645 34.093 89.079 40.244 1.00 41.49 N
ATOM 23 N3 G A 645 31.979 89.639 40.970 1.00 42.05 N
ATOM 24 C4 G A 645 31.132 89.502 42.009 1.00 42.29 C
ATOM 25 P C A 646 25.733 87.971 38.994 1.00 50.88 P
ATOM 26 OP1 C A 646 24.753 88.061 37.879 1.00 50.59 O
ATOM 27 OP2 C A 646 25.311 87.392 40.294 1.00 49.57 O
ATOM 28 O5' C A 646 27.024 87.201 38.464 1.00 46.99 O
TER
ATOM 1 O3' U B 650 35.111 88.575 37.666 1.00 42.66 O
ATOM 2 P C B 651 34.735 89.760 36.663 1.00 45.17 P
ATOM 3 OP1 C B 651 33.589 90.493 37.251 1.00 40.69 O
ATOM 4 OP2 C B 651 34.639 89.199 35.289 1.00 43.18 O
ATOM 5 O5' C B 651 36.018 90.697 36.666 1.00 46.99 O
ATOM 6 C5' C B 651 36.290 91.567 37.769 1.00 49.21 C
ATOM 7 C4' C B 651 37.683 92.117 37.658 1.00 50.38 C
ATOM 8 O4' C B 651 38.613 91.018 37.527 1.00 49.12 O
ATOM 9 C3' C B 651 37.988 92.895 36.394 1.00 51.51 C
ATOM 10 O3' C B 651 37.463 94.208 36.470 1.00 54.55 O
ATOM 11 C2' C B 651 39.511 92.904 36.412 1.00 50.76 C
ATOM 12 O2' C B 651 40.036 93.844 37.328 1.00 51.01 O
ATOM 13 C1' C B 651 39.808 91.508 36.957 1.00 49.68 C
ATOM 14 N1 C B 651 40.276 90.565 35.939 1.00 51.64 N
ATOM 15 C2 C B 651 41.646 90.468 35.714 1.00 53.88 C
ATOM 16 O2 C B 651 42.407 91.186 36.364 1.00 56.14 O
ATOM 17 N3 C B 651 42.110 89.601 34.791 1.00 55.89 N
ATOM 18 C4 C B 651 41.256 88.855 34.092 1.00 56.08 C
ATOM 19 N4 C B 651 41.766 88.016 33.181 1.00 55.85 N
ATOM 20 C5 C B 651 39.843 88.936 34.296 1.00 54.52 C
ATOM 21 C6 C B 651 39.402 89.795 35.223 1.00 52.79 C
ATOM 22 P U B 652 36.577 94.777 35.262 1.00 56.47 P
ATOM 23 OP1 U B 652 36.257 96.185 35.603 1.00 56.13 O
ATOM 24 OP2 U B 652 35.465 93.821 35.030 1.00 56.41 O
ATOM 25 O5' U B 652 37.579 94.710 34.018 1.00 53.77 O
TER
ATOM 2 P G A 645 24.714 89.946 44.054 1.00 49.11 P
ATOM 3 OP1 G A 645 23.438 89.877 43.310 1.00 50.57 O
ATOM 4 OP2 G A 645 25.120 88.804 44.903 1.00 48.53 O
ATOM 5 O5' G A 645 25.875 90.204 42.990 1.00 48.14 O
ATOM 6 C5' G A 645 25.709 91.178 41.938 1.00 46.51 C
ATOM 7 C4' G A 645 26.857 91.099 40.955 1.00 46.79 C
ATOM 8 O4' G A 645 28.095 91.446 41.617 1.00 45.30 O
ATOM 9 C3' G A 645 27.141 89.737 40.343 1.00 46.99 C
ATOM 10 O3' G A 645 26.255 89.471 39.254 1.00 49.57 O
ATOM 11 C2' G A 645 28.598 89.872 39.905 1.00 44.80 C
ATOM 12 O2' G A 645 28.791 90.573 38.697 1.00 44.57 O
ATOM 13 C1' G A 645 29.167 90.735 41.025 1.00 44.21 C
ATOM 14 N9 G A 645 29.847 89.974 42.063 1.00 43.24 N
ATOM 15 C8 G A 645 29.348 89.604 43.286 1.00 44.30 C
ATOM 16 N7 G A 645 30.210 88.949 44.012 1.00 44.52 N
ATOM 17 C5 G A 645 31.342 88.877 43.216 1.00 42.09 C
ATOM 18 C6 G A 645 32.592 88.280 43.466 1.00 42.47 C
ATOM 19 O6 G A 645 32.964 87.689 44.483 1.00 41.34 O
ATOM 20 N1 G A 645 33.456 88.422 42.379 1.00 42.61 N
ATOM 21 C2 G A 645 33.144 89.063 41.201 1.00 42.25 C
ATOM 22 N2 G A 645 34.093 89.079 40.244 1.00 41.49 N
ATOM 23 N3 G A 645 31.979 89.639 40.970 1.00 42.05 N
ATOM 24 C4 G A 645 31.132 89.502 42.009 1.00 42.29 C
ATOM 25 P C A 646 25.733 87.971 38.994 1.00 50.88 P
ATOM 26 OP1 C A 646 24.753 88.061 37.879 1.00 50.59 O
ATOM 27 OP2 C A 646 25.311 87.392 40.294 1.00 49.57 O
ATOM 28 O5' C A 646 27.024 87.201 38.464 1.00 46.99 O
TER
ATOM 1 O3' U B 650 35.111 88.575 37.666 1.00 42.66 O
ATOM 2 P C B 651 34.735 89.760 36.663 1.00 45.17 P
ATOM 3 OP1 C B 651 33.589 90.493 37.251 1.00 40.69 O
ATOM 4 OP2 C B 651 34.639 89.199 35.289 1.00 43.18 O
ATOM 5 O5' C B 651 36.018 90.697 36.666 1.00 46.99 O
ATOM 6 C5' C B 651 36.290 91.567 37.769 1.00 49.21 C
ATOM 7 C4' C B 651 37.683 92.117 37.658 1.00 50.38 C
ATOM 8 O4' C B 651 38.613 91.018 37.527 1.00 49.12 O
ATOM 9 C3' C B 651 37.988 92.895 36.394 1.00 51.51 C
ATOM 10 O3' C B 651 37.463 94.208 36.470 1.00 54.55 O
ATOM 11 C2' C B 651 39.511 92.904 36.412 1.00 50.76 C
ATOM 12 O2' C B 651 40.036 93.844 37.328 1.00 51.01 O
ATOM 13 C1' C B 651 39.808 91.508 36.957 1.00 49.68 C
ATOM 14 N1 C B 651 40.276 90.565 35.939 1.00 51.64 N
ATOM 15 C2 C B 651 41.646 90.468 35.714 1.00 53.88 C
ATOM 16 O2 C B 651 42.407 91.186 36.364 1.00 56.14 O
ATOM 17 N3 C B 651 42.110 89.601 34.791 1.00 55.89 N
ATOM 18 C4 C B 651 41.256 88.855 34.092 1.00 56.08 C
ATOM 19 N4 C B 651 41.766 88.016 33.181 1.00 55.85 N
ATOM 20 C5 C B 651 39.843 88.936 34.296 1.00 54.52 C
ATOM 21 C6 C B 651 39.402 89.795 35.223 1.00 52.79 C
ATOM 22 P U B 652 36.577 94.777 35.262 1.00 56.47 P
ATOM 23 OP1 U B 652 36.257 96.185 35.603 1.00 56.13 O
ATOM 24 OP2 U B 652 35.465 93.821 35.030 1.00 56.41 O
ATOM 25 O5' U B 652 37.579 94.710 34.018 1.00 53.77 O
TER
Atoms:
OP1: (23.438,89.877,43.310)
OP2: (25.120,88.804,44.903)
C3': (27.141,89.737,40.343)
C1': (29.167,90.735,41.025)
C5': (25.709,91.178,41.938)
O6: (32.964,87.689,44.483)
O4': (28.095,91.446,41.617)
C8: (29.348,89.604,43.286)
C2: (33.144,89.063,41.201)
C6: (32.592,88.280,43.466)
C5: (31.342,88.877,43.216)
C4: (31.132,89.502,42.009)
P: (24.714,89.946,44.054)
C4': (26.857,91.099,40.955)
C2': (28.598,89.872,39.905)
O2': (28.791,90.573,38.697)
N1: (33.456,88.422,42.379)
N2: (34.093,89.079,40.244)
N3: (31.979,89.639,40.970)
N7: (30.210,88.949,44.012)
N9: (29.847,89.974,42.063)
O5': (25.875,90.204,42.990)
O3': (26.255,89.471,39.254)
OP2: (25.120,88.804,44.903)
C3': (27.141,89.737,40.343)
C1': (29.167,90.735,41.025)
C5': (25.709,91.178,41.938)
O6: (32.964,87.689,44.483)
O4': (28.095,91.446,41.617)
C8: (29.348,89.604,43.286)
C2: (33.144,89.063,41.201)
C6: (32.592,88.280,43.466)
C5: (31.342,88.877,43.216)
C4: (31.132,89.502,42.009)
P: (24.714,89.946,44.054)
C4': (26.857,91.099,40.955)
C2': (28.598,89.872,39.905)
O2': (28.791,90.573,38.697)
N1: (33.456,88.422,42.379)
N2: (34.093,89.079,40.244)
N3: (31.979,89.639,40.970)
N7: (30.210,88.949,44.012)
N9: (29.847,89.974,42.063)
O5': (25.875,90.204,42.990)
O3': (26.255,89.471,39.254)
C2: (41.646,90.468,35.714)
OP1: (33.589,90.493,37.251)
OP2: (34.639,89.199,35.289)
C4: (41.256,88.855,34.092)
O5': (36.018,90.697,36.666)
C3': (37.988,92.895,36.394)
C1': (39.808,91.508,36.957)
O4': (38.613,91.018,37.527)
C5': (36.290,91.567,37.769)
P: (34.735,89.760,36.663)
O2: (42.407,91.186,36.364)
C4': (37.683,92.117,37.658)
C2': (39.511,92.904,36.412)
O2': (40.036,93.844,37.328)
N1: (40.276,90.565,35.939)
N3: (42.110,89.601,34.791)
N4: (41.766,88.016,33.181)
C6: (39.402,89.795,35.223)
C5: (39.843,88.936,34.296)
O3': (37.463,94.208,36.470)
OP1: (33.589,90.493,37.251)
OP2: (34.639,89.199,35.289)
C4: (41.256,88.855,34.092)
O5': (36.018,90.697,36.666)
C3': (37.988,92.895,36.394)
C1': (39.808,91.508,36.957)
O4': (38.613,91.018,37.527)
C5': (36.290,91.567,37.769)
P: (34.735,89.760,36.663)
O2: (42.407,91.186,36.364)
C4': (37.683,92.117,37.658)
C2': (39.511,92.904,36.412)
O2': (40.036,93.844,37.328)
N1: (40.276,90.565,35.939)
N3: (42.110,89.601,34.791)
N4: (41.766,88.016,33.181)
C6: (39.402,89.795,35.223)
C5: (39.843,88.936,34.296)
O3': (37.463,94.208,36.470)
Image (generated by PyMOL):