Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12553:12555
Extra
PDB:
ATOM 1 O3' G A2552 31.286 -37.648 74.043 1.00 41.22 O
ATOM 2 P A A2553 32.251 -36.884 75.038 1.00 37.87 P
ATOM 3 OP1 A A2553 33.276 -36.293 74.235 1.00 37.71 O
ATOM 4 OP2 A A2553 32.650 -37.851 76.101 1.00 38.08 O
ATOM 5 O5' A A2553 31.293 -35.734 75.634 1.00 37.74 O
ATOM 6 C5' A A2553 30.225 -36.040 76.531 1.00 37.87 C
ATOM 7 C4' A A2553 30.505 -35.514 77.913 1.00 37.85 C
ATOM 8 O4' A A2553 30.761 -34.108 77.846 1.00 37.62 O
ATOM 9 C3' A A2553 29.408 -35.671 78.960 1.00 37.99 C
ATOM 10 O3' A A2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 11 C2' A A2553 29.431 -34.325 79.735 1.00 37.83 C
ATOM 12 O2' A A2553 29.587 -34.457 81.136 1.00 37.95 O
ATOM 13 C1' A A2553 30.614 -33.580 79.136 1.00 37.63 C
ATOM 14 N9 A A2553 30.406 -32.150 78.995 1.00 37.42 N
ATOM 15 C8 A A2553 29.320 -31.405 79.310 1.00 37.39 C
ATOM 16 N7 A A2553 29.457 -30.145 78.971 1.00 37.20 N
ATOM 17 C5 A A2553 30.689 -30.073 78.386 1.00 37.10 C
ATOM 18 C6 A A2553 31.371 -29.030 77.817 1.00 36.91 C
ATOM 19 N6 A A2553 30.908 -27.785 77.723 1.00 36.78 N
ATOM 20 N1 A A2553 32.570 -29.317 77.310 1.00 36.87 N
ATOM 21 C2 A A2553 33.040 -30.536 77.378 1.00 37.02 C
ATOM 22 N3 A A2553 32.514 -31.606 77.892 1.00 37.21 N
ATOM 23 C4 A A2553 31.300 -31.295 78.381 1.00 37.24 C
ATOM 24 P A A2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 25 OP1 A A2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 26 OP2 A A2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 27 O5' A A2554 27.640 -36.784 81.183 1.00 42.73 O
TER
ATOM 1 O3' A B2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 2 P A B2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 3 OP1 A B2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 4 OP2 A B2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 5 O5' A B2555 23.642 -31.732 80.641 1.00 48.38 O
ATOM 6 C5' A B2555 22.352 -31.818 81.209 1.00 48.52 C
ATOM 7 C4' A B2555 21.948 -30.500 81.775 1.00 48.43 C
ATOM 8 O4' A B2555 22.878 -30.184 82.845 1.00 48.41 O
ATOM 9 C3' A B2555 22.021 -29.334 80.777 1.00 48.21 C
ATOM 10 O3' A B2555 20.951 -28.411 80.992 1.00 48.20 O
ATOM 11 C2' A B2555 23.357 -28.684 81.106 1.00 48.06 C
ATOM 12 O2' A B2555 23.437 -27.318 80.805 1.00 47.88 O
ATOM 13 C1' A B2555 23.465 -28.924 82.603 1.00 48.20 C
ATOM 14 N9 A B2555 24.834 -28.927 83.075 1.00 48.16 N
ATOM 15 C8 A B2555 25.894 -29.493 82.456 1.00 48.11 C
ATOM 16 N7 A B2555 27.025 -29.286 83.077 1.00 48.08 N
ATOM 17 C5 A B2555 26.671 -28.505 84.151 1.00 48.11 C
ATOM 18 C6 A B2555 27.425 -27.930 85.169 1.00 48.11 C
ATOM 19 N6 A B2555 28.745 -28.080 85.216 1.00 48.08 N
ATOM 20 N1 A B2555 26.782 -27.192 86.106 1.00 48.17 N
ATOM 21 C2 A B2555 25.465 -27.043 85.991 1.00 48.21 C
ATOM 22 N3 A B2555 24.634 -27.523 85.071 1.00 48.21 N
ATOM 23 C4 A B2555 25.314 -28.251 84.158 1.00 48.16 C
ATOM 24 P A B2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 25 OP1 A B2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 26 OP2 A B2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 27 O5' A B2556 18.675 -27.374 80.578 1.00 32.96 O
TER
ATOM 2 P A A2553 32.251 -36.884 75.038 1.00 37.87 P
ATOM 3 OP1 A A2553 33.276 -36.293 74.235 1.00 37.71 O
ATOM 4 OP2 A A2553 32.650 -37.851 76.101 1.00 38.08 O
ATOM 5 O5' A A2553 31.293 -35.734 75.634 1.00 37.74 O
ATOM 6 C5' A A2553 30.225 -36.040 76.531 1.00 37.87 C
ATOM 7 C4' A A2553 30.505 -35.514 77.913 1.00 37.85 C
ATOM 8 O4' A A2553 30.761 -34.108 77.846 1.00 37.62 O
ATOM 9 C3' A A2553 29.408 -35.671 78.960 1.00 37.99 C
ATOM 10 O3' A A2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 11 C2' A A2553 29.431 -34.325 79.735 1.00 37.83 C
ATOM 12 O2' A A2553 29.587 -34.457 81.136 1.00 37.95 O
ATOM 13 C1' A A2553 30.614 -33.580 79.136 1.00 37.63 C
ATOM 14 N9 A A2553 30.406 -32.150 78.995 1.00 37.42 N
ATOM 15 C8 A A2553 29.320 -31.405 79.310 1.00 37.39 C
ATOM 16 N7 A A2553 29.457 -30.145 78.971 1.00 37.20 N
ATOM 17 C5 A A2553 30.689 -30.073 78.386 1.00 37.10 C
ATOM 18 C6 A A2553 31.371 -29.030 77.817 1.00 36.91 C
ATOM 19 N6 A A2553 30.908 -27.785 77.723 1.00 36.78 N
ATOM 20 N1 A A2553 32.570 -29.317 77.310 1.00 36.87 N
ATOM 21 C2 A A2553 33.040 -30.536 77.378 1.00 37.02 C
ATOM 22 N3 A A2553 32.514 -31.606 77.892 1.00 37.21 N
ATOM 23 C4 A A2553 31.300 -31.295 78.381 1.00 37.24 C
ATOM 24 P A A2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 25 OP1 A A2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 26 OP2 A A2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 27 O5' A A2554 27.640 -36.784 81.183 1.00 42.73 O
TER
ATOM 1 O3' A B2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 2 P A B2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 3 OP1 A B2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 4 OP2 A B2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 5 O5' A B2555 23.642 -31.732 80.641 1.00 48.38 O
ATOM 6 C5' A B2555 22.352 -31.818 81.209 1.00 48.52 C
ATOM 7 C4' A B2555 21.948 -30.500 81.775 1.00 48.43 C
ATOM 8 O4' A B2555 22.878 -30.184 82.845 1.00 48.41 O
ATOM 9 C3' A B2555 22.021 -29.334 80.777 1.00 48.21 C
ATOM 10 O3' A B2555 20.951 -28.411 80.992 1.00 48.20 O
ATOM 11 C2' A B2555 23.357 -28.684 81.106 1.00 48.06 C
ATOM 12 O2' A B2555 23.437 -27.318 80.805 1.00 47.88 O
ATOM 13 C1' A B2555 23.465 -28.924 82.603 1.00 48.20 C
ATOM 14 N9 A B2555 24.834 -28.927 83.075 1.00 48.16 N
ATOM 15 C8 A B2555 25.894 -29.493 82.456 1.00 48.11 C
ATOM 16 N7 A B2555 27.025 -29.286 83.077 1.00 48.08 N
ATOM 17 C5 A B2555 26.671 -28.505 84.151 1.00 48.11 C
ATOM 18 C6 A B2555 27.425 -27.930 85.169 1.00 48.11 C
ATOM 19 N6 A B2555 28.745 -28.080 85.216 1.00 48.08 N
ATOM 20 N1 A B2555 26.782 -27.192 86.106 1.00 48.17 N
ATOM 21 C2 A B2555 25.465 -27.043 85.991 1.00 48.21 C
ATOM 22 N3 A B2555 24.634 -27.523 85.071 1.00 48.21 N
ATOM 23 C4 A B2555 25.314 -28.251 84.158 1.00 48.16 C
ATOM 24 P A B2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 25 OP1 A B2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 26 OP2 A B2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 27 O5' A B2556 18.675 -27.374 80.578 1.00 32.96 O
TER
Atoms:
OP1: (33.276,-36.293,74.235)
OP2: (32.650,-37.851,76.101)
C3': (29.408,-35.671,78.960)
C1': (30.614,-33.580,79.136)
C5': (30.225,-36.040,76.531)
O4': (30.761,-34.108,77.846)
C8: (29.320,-31.405,79.310)
O2': (29.587,-34.457,81.136)
C6: (31.371,-29.030,77.817)
C5: (30.689,-30.073,78.386)
C4: (31.300,-31.295,78.381)
P: (32.251,-36.884,75.038)
C4': (30.505,-35.514,77.913)
C2': (29.431,-34.325,79.735)
C2: (33.040,-30.536,77.378)
N1: (32.570,-29.317,77.310)
N3: (32.514,-31.606,77.892)
N6: (30.908,-27.785,77.723)
N7: (29.457,-30.145,78.971)
N9: (30.406,-32.150,78.995)
O5': (31.293,-35.734,75.634)
O3': (29.713,-36.745,79.846)
OP2: (32.650,-37.851,76.101)
C3': (29.408,-35.671,78.960)
C1': (30.614,-33.580,79.136)
C5': (30.225,-36.040,76.531)
O4': (30.761,-34.108,77.846)
C8: (29.320,-31.405,79.310)
O2': (29.587,-34.457,81.136)
C6: (31.371,-29.030,77.817)
C5: (30.689,-30.073,78.386)
C4: (31.300,-31.295,78.381)
P: (32.251,-36.884,75.038)
C4': (30.505,-35.514,77.913)
C2': (29.431,-34.325,79.735)
C2: (33.040,-30.536,77.378)
N1: (32.570,-29.317,77.310)
N3: (32.514,-31.606,77.892)
N6: (30.908,-27.785,77.723)
N7: (29.457,-30.145,78.971)
N9: (30.406,-32.150,78.995)
O5': (31.293,-35.734,75.634)
O3': (29.713,-36.745,79.846)
OP1: (23.351,-33.827,79.301)
OP2: (25.596,-32.582,79.312)
C3': (22.021,-29.334,80.777)
C1': (23.465,-28.924,82.603)
C5': (22.352,-31.818,81.209)
O4': (22.878,-30.184,82.845)
C8: (25.894,-29.493,82.456)
O2': (23.437,-27.318,80.805)
C6: (27.425,-27.930,85.169)
C5: (26.671,-28.505,84.151)
C4: (25.314,-28.251,84.158)
P: (24.345,-32.994,80.025)
C4': (21.948,-30.500,81.775)
C2': (23.357,-28.684,81.106)
C2: (25.465,-27.043,85.991)
N1: (26.782,-27.192,86.106)
N3: (24.634,-27.523,85.071)
N6: (28.745,-28.080,85.216)
N7: (27.025,-29.286,83.077)
N9: (24.834,-28.927,83.075)
O5': (23.642,-31.732,80.641)
O3': (20.951,-28.411,80.992)
OP2: (25.596,-32.582,79.312)
C3': (22.021,-29.334,80.777)
C1': (23.465,-28.924,82.603)
C5': (22.352,-31.818,81.209)
O4': (22.878,-30.184,82.845)
C8: (25.894,-29.493,82.456)
O2': (23.437,-27.318,80.805)
C6: (27.425,-27.930,85.169)
C5: (26.671,-28.505,84.151)
C4: (25.314,-28.251,84.158)
P: (24.345,-32.994,80.025)
C4': (21.948,-30.500,81.775)
C2': (23.357,-28.684,81.106)
C2: (25.465,-27.043,85.991)
N1: (26.782,-27.192,86.106)
N3: (24.634,-27.523,85.071)
N6: (28.745,-28.080,85.216)
N7: (27.025,-29.286,83.077)
N9: (24.834,-28.927,83.075)
O5': (23.642,-31.732,80.641)
O3': (20.951,-28.411,80.992)
Image (generated by PyMOL):