Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:4104:4103
Extra
PDB:
ATOM 1 O3' A A 103 46.384 -3.928 128.506 1.00 47.00 O
ATOM 2 P A A 104 45.433 -3.845 129.778 1.00 47.40 P
ATOM 3 OP1 A A 104 45.274 -5.210 130.320 1.00 47.56 O
ATOM 4 OP2 A A 104 44.244 -3.118 129.363 1.00 47.27 O
ATOM 5 O5' A A 104 46.296 -2.979 130.779 1.00 48.02 O
ATOM 6 C5' A A 104 46.383 -1.578 130.643 1.00 48.11 C
ATOM 7 C4' A A 104 47.036 -0.978 131.838 1.00 48.84 C
ATOM 8 O4' A A 104 48.438 -1.355 131.867 1.00 48.82 O
ATOM 9 C3' A A 104 46.992 0.531 131.916 1.00 49.09 C
ATOM 10 O3' A A 104 46.709 0.898 133.263 1.00 49.92 O
ATOM 11 C2' A A 104 48.423 0.945 131.566 1.00 48.98 C
ATOM 12 O2' A A 104 48.824 2.144 132.167 1.00 49.51 O
ATOM 13 C1' A A 104 49.225 -0.224 132.103 1.00 49.13 C
ATOM 14 N9 A A 104 50.528 -0.438 131.463 1.00 48.78 N
ATOM 15 C8 A A 104 50.803 -1.015 130.237 1.00 48.04 C
ATOM 16 N7 A A 104 52.097 -1.101 129.956 1.00 47.94 N
ATOM 17 C5 A A 104 52.718 -0.569 131.075 1.00 48.66 C
ATOM 18 C6 A A 104 54.050 -0.387 131.400 1.00 48.95 C
ATOM 19 N6 A A 104 55.089 -0.710 130.637 1.00 48.57 N
ATOM 20 N1 A A 104 54.289 0.163 132.583 1.00 49.71 N
ATOM 21 C2 A A 104 53.310 0.509 133.394 1.00 50.15 C
ATOM 22 N3 A A 104 52.033 0.404 133.221 1.00 49.96 N
ATOM 23 C4 A A 104 51.784 -0.158 132.021 1.00 49.19 C
ATOM 24 P C A 105 45.192 1.115 133.750 1.00 50.30 P
ATOM 25 OP1 C A 105 44.286 0.466 132.764 1.00 49.65 O
ATOM 26 OP2 C A 105 45.026 2.590 134.015 1.00 50.70 O
ATOM 27 O5' C A 105 45.178 0.310 135.119 1.00 50.98 O
TER
ATOM 1 O3' G B 102 48.434 0.882 126.481 1.00 43.91 O
ATOM 2 P A B 103 47.356 0.055 127.344 1.00 46.85 P
ATOM 3 OP1 A B 103 46.296 -0.310 126.410 1.00 46.32 O
ATOM 4 OP2 A B 103 47.016 0.875 128.546 1.00 47.59 O
ATOM 5 O5' A B 103 48.157 -1.263 127.768 1.00 46.92 O
ATOM 6 C5' A B 103 48.480 -2.248 126.794 1.00 46.32 C
ATOM 7 C4' A B 103 48.493 -3.652 127.361 1.00 46.46 C
ATOM 8 O4' A B 103 49.850 -4.058 127.666 1.00 46.61 O
ATOM 9 C3' A B 103 47.775 -3.860 128.668 1.00 47.10 C
ATOM 10 O3' A B 103 46.384 -3.928 128.506 1.00 47.00 O
ATOM 11 C2' A B 103 48.386 -5.161 129.179 1.00 47.26 C
ATOM 12 O2' A B 103 47.806 -6.266 128.511 1.00 46.82 O
ATOM 13 C1' A B 103 49.831 -5.033 128.694 1.00 47.05 C
ATOM 14 N9 A B 103 50.767 -4.636 129.763 1.00 47.68 N
ATOM 15 C8 A B 103 50.583 -3.921 130.905 1.00 48.35 C
ATOM 16 N7 A B 103 51.653 -3.758 131.625 1.00 48.81 N
ATOM 17 C5 A B 103 52.633 -4.417 130.904 1.00 48.40 C
ATOM 18 C6 A B 103 54.021 -4.660 131.083 1.00 48.56 C
ATOM 19 N6 A B 103 54.785 -4.257 132.100 1.00 49.22 N
ATOM 20 N1 A B 103 54.650 -5.379 130.130 1.00 48.04 N
ATOM 21 C2 A B 103 53.978 -5.833 129.074 1.00 47.40 C
ATOM 22 N3 A B 103 52.702 -5.671 128.808 1.00 47.19 N
ATOM 23 C4 A B 103 52.081 -4.960 129.756 1.00 47.71 C
ATOM 24 P A B 104 45.433 -3.845 129.778 1.00 47.40 P
ATOM 25 OP1 A B 104 45.274 -5.210 130.320 1.00 47.56 O
ATOM 26 OP2 A B 104 44.244 -3.118 129.363 1.00 47.27 O
ATOM 27 O5' A B 104 46.296 -2.979 130.779 1.00 48.02 O
TER
ATOM 2 P A A 104 45.433 -3.845 129.778 1.00 47.40 P
ATOM 3 OP1 A A 104 45.274 -5.210 130.320 1.00 47.56 O
ATOM 4 OP2 A A 104 44.244 -3.118 129.363 1.00 47.27 O
ATOM 5 O5' A A 104 46.296 -2.979 130.779 1.00 48.02 O
ATOM 6 C5' A A 104 46.383 -1.578 130.643 1.00 48.11 C
ATOM 7 C4' A A 104 47.036 -0.978 131.838 1.00 48.84 C
ATOM 8 O4' A A 104 48.438 -1.355 131.867 1.00 48.82 O
ATOM 9 C3' A A 104 46.992 0.531 131.916 1.00 49.09 C
ATOM 10 O3' A A 104 46.709 0.898 133.263 1.00 49.92 O
ATOM 11 C2' A A 104 48.423 0.945 131.566 1.00 48.98 C
ATOM 12 O2' A A 104 48.824 2.144 132.167 1.00 49.51 O
ATOM 13 C1' A A 104 49.225 -0.224 132.103 1.00 49.13 C
ATOM 14 N9 A A 104 50.528 -0.438 131.463 1.00 48.78 N
ATOM 15 C8 A A 104 50.803 -1.015 130.237 1.00 48.04 C
ATOM 16 N7 A A 104 52.097 -1.101 129.956 1.00 47.94 N
ATOM 17 C5 A A 104 52.718 -0.569 131.075 1.00 48.66 C
ATOM 18 C6 A A 104 54.050 -0.387 131.400 1.00 48.95 C
ATOM 19 N6 A A 104 55.089 -0.710 130.637 1.00 48.57 N
ATOM 20 N1 A A 104 54.289 0.163 132.583 1.00 49.71 N
ATOM 21 C2 A A 104 53.310 0.509 133.394 1.00 50.15 C
ATOM 22 N3 A A 104 52.033 0.404 133.221 1.00 49.96 N
ATOM 23 C4 A A 104 51.784 -0.158 132.021 1.00 49.19 C
ATOM 24 P C A 105 45.192 1.115 133.750 1.00 50.30 P
ATOM 25 OP1 C A 105 44.286 0.466 132.764 1.00 49.65 O
ATOM 26 OP2 C A 105 45.026 2.590 134.015 1.00 50.70 O
ATOM 27 O5' C A 105 45.178 0.310 135.119 1.00 50.98 O
TER
ATOM 1 O3' G B 102 48.434 0.882 126.481 1.00 43.91 O
ATOM 2 P A B 103 47.356 0.055 127.344 1.00 46.85 P
ATOM 3 OP1 A B 103 46.296 -0.310 126.410 1.00 46.32 O
ATOM 4 OP2 A B 103 47.016 0.875 128.546 1.00 47.59 O
ATOM 5 O5' A B 103 48.157 -1.263 127.768 1.00 46.92 O
ATOM 6 C5' A B 103 48.480 -2.248 126.794 1.00 46.32 C
ATOM 7 C4' A B 103 48.493 -3.652 127.361 1.00 46.46 C
ATOM 8 O4' A B 103 49.850 -4.058 127.666 1.00 46.61 O
ATOM 9 C3' A B 103 47.775 -3.860 128.668 1.00 47.10 C
ATOM 10 O3' A B 103 46.384 -3.928 128.506 1.00 47.00 O
ATOM 11 C2' A B 103 48.386 -5.161 129.179 1.00 47.26 C
ATOM 12 O2' A B 103 47.806 -6.266 128.511 1.00 46.82 O
ATOM 13 C1' A B 103 49.831 -5.033 128.694 1.00 47.05 C
ATOM 14 N9 A B 103 50.767 -4.636 129.763 1.00 47.68 N
ATOM 15 C8 A B 103 50.583 -3.921 130.905 1.00 48.35 C
ATOM 16 N7 A B 103 51.653 -3.758 131.625 1.00 48.81 N
ATOM 17 C5 A B 103 52.633 -4.417 130.904 1.00 48.40 C
ATOM 18 C6 A B 103 54.021 -4.660 131.083 1.00 48.56 C
ATOM 19 N6 A B 103 54.785 -4.257 132.100 1.00 49.22 N
ATOM 20 N1 A B 103 54.650 -5.379 130.130 1.00 48.04 N
ATOM 21 C2 A B 103 53.978 -5.833 129.074 1.00 47.40 C
ATOM 22 N3 A B 103 52.702 -5.671 128.808 1.00 47.19 N
ATOM 23 C4 A B 103 52.081 -4.960 129.756 1.00 47.71 C
ATOM 24 P A B 104 45.433 -3.845 129.778 1.00 47.40 P
ATOM 25 OP1 A B 104 45.274 -5.210 130.320 1.00 47.56 O
ATOM 26 OP2 A B 104 44.244 -3.118 129.363 1.00 47.27 O
ATOM 27 O5' A B 104 46.296 -2.979 130.779 1.00 48.02 O
TER
Atoms:
OP1: (45.274,-5.210,130.320)
OP2: (44.244,-3.118,129.363)
C3': (46.992,0.531,131.916)
C1': (49.225,-0.224,132.103)
C5': (46.383,-1.578,130.643)
O4': (48.438,-1.355,131.867)
C8: (50.803,-1.015,130.237)
O2': (48.824,2.144,132.167)
C6: (54.050,-0.387,131.400)
C5: (52.718,-0.569,131.075)
C4: (51.784,-0.158,132.021)
P: (45.433,-3.845,129.778)
C4': (47.036,-0.978,131.838)
C2': (48.423,0.945,131.566)
C2: (53.310,0.509,133.394)
N1: (54.289,0.163,132.583)
N3: (52.033,0.404,133.221)
N6: (55.089,-0.710,130.637)
N7: (52.097,-1.101,129.956)
N9: (50.528,-0.438,131.463)
O5': (46.296,-2.979,130.779)
O3': (46.709,0.898,133.263)
OP2: (44.244,-3.118,129.363)
C3': (46.992,0.531,131.916)
C1': (49.225,-0.224,132.103)
C5': (46.383,-1.578,130.643)
O4': (48.438,-1.355,131.867)
C8: (50.803,-1.015,130.237)
O2': (48.824,2.144,132.167)
C6: (54.050,-0.387,131.400)
C5: (52.718,-0.569,131.075)
C4: (51.784,-0.158,132.021)
P: (45.433,-3.845,129.778)
C4': (47.036,-0.978,131.838)
C2': (48.423,0.945,131.566)
C2: (53.310,0.509,133.394)
N1: (54.289,0.163,132.583)
N3: (52.033,0.404,133.221)
N6: (55.089,-0.710,130.637)
N7: (52.097,-1.101,129.956)
N9: (50.528,-0.438,131.463)
O5': (46.296,-2.979,130.779)
O3': (46.709,0.898,133.263)
OP1: (46.296,-0.310,126.410)
OP2: (47.016,0.875,128.546)
C3': (47.775,-3.860,128.668)
C1': (49.831,-5.033,128.694)
C5': (48.480,-2.248,126.794)
O4': (49.850,-4.058,127.666)
C8: (50.583,-3.921,130.905)
O2': (47.806,-6.266,128.511)
C6: (54.021,-4.660,131.083)
C5: (52.633,-4.417,130.904)
C4: (52.081,-4.960,129.756)
P: (47.356,0.055,127.344)
C4': (48.493,-3.652,127.361)
C2': (48.386,-5.161,129.179)
C2: (53.978,-5.833,129.074)
N1: (54.650,-5.379,130.130)
N3: (52.702,-5.671,128.808)
N6: (54.785,-4.257,132.100)
N7: (51.653,-3.758,131.625)
N9: (50.767,-4.636,129.763)
O5': (48.157,-1.263,127.768)
O3': (46.384,-3.928,128.506)
OP2: (47.016,0.875,128.546)
C3': (47.775,-3.860,128.668)
C1': (49.831,-5.033,128.694)
C5': (48.480,-2.248,126.794)
O4': (49.850,-4.058,127.666)
C8: (50.583,-3.921,130.905)
O2': (47.806,-6.266,128.511)
C6: (54.021,-4.660,131.083)
C5: (52.633,-4.417,130.904)
C4: (52.081,-4.960,129.756)
P: (47.356,0.055,127.344)
C4': (48.493,-3.652,127.361)
C2': (48.386,-5.161,129.179)
C2: (53.978,-5.833,129.074)
N1: (54.650,-5.379,130.130)
N3: (52.702,-5.671,128.808)
N6: (54.785,-4.257,132.100)
N7: (51.653,-3.758,131.625)
N9: (50.767,-4.636,129.763)
O5': (48.157,-1.263,127.768)
O3': (46.384,-3.928,128.506)
Image (generated by PyMOL):