Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0645:0651
Extra
PDB:
ATOM 1 O3' G A 644 24.537 91.057 44.524 1.00 44.90 O
ATOM 2 P G A 645 24.620 89.675 43.698 1.00 42.85 P
ATOM 3 OP1 G A 645 23.326 89.452 43.041 1.00 43.38 O
ATOM 4 OP2 G A 645 25.174 88.629 44.582 1.00 43.38 O
ATOM 5 O5' G A 645 25.691 89.964 42.553 1.00 43.08 O
ATOM 6 C5' G A 645 25.442 90.955 41.536 1.00 41.32 C
ATOM 7 C4' G A 645 26.574 90.976 40.536 1.00 41.53 C
ATOM 8 O4' G A 645 27.802 91.334 41.211 1.00 41.62 O
ATOM 9 C3' G A 645 26.904 89.650 39.881 1.00 42.32 C
ATOM 10 O3' G A 645 26.029 89.374 38.794 1.00 43.62 O
ATOM 11 C2' G A 645 28.353 89.845 39.452 1.00 40.90 C
ATOM 12 O2' G A 645 28.493 90.636 38.289 1.00 41.31 O
ATOM 13 C1' G A 645 28.895 90.646 40.629 1.00 40.35 C
ATOM 14 N9 G A 645 29.522 89.842 41.668 1.00 41.22 N
ATOM 15 C8 G A 645 28.972 89.481 42.876 1.00 41.86 C
ATOM 16 N7 G A 645 29.794 88.804 43.630 1.00 42.57 N
ATOM 17 C5 G A 645 30.952 88.698 42.870 1.00 40.23 C
ATOM 18 C6 G A 645 32.192 88.078 43.168 1.00 39.34 C
ATOM 19 O6 G A 645 32.531 87.494 44.206 1.00 38.30 O
ATOM 20 N1 G A 645 33.090 88.196 42.112 1.00 40.97 N
ATOM 21 C2 G A 645 32.833 88.843 40.923 1.00 42.70 C
ATOM 22 N2 G A 645 33.834 88.853 40.013 1.00 41.09 N
ATOM 23 N3 G A 645 31.682 89.437 40.641 1.00 42.21 N
ATOM 24 C4 G A 645 30.795 89.323 41.650 1.00 41.02 C
ATOM 25 P C A 646 25.500 87.876 38.571 1.00 43.55 P
ATOM 26 OP1 C A 646 24.496 87.935 37.477 1.00 43.55 O
ATOM 27 OP2 C A 646 25.106 87.348 39.906 1.00 44.05 O
ATOM 28 O5' C A 646 26.784 87.084 38.051 1.00 39.29 O
TER
ATOM 1 O3' U B 650 34.980 88.328 37.296 1.00 38.10 O
ATOM 2 P C B 651 34.668 89.515 36.266 1.00 40.78 P
ATOM 3 OP1 C B 651 33.536 90.290 36.841 1.00 37.75 O
ATOM 4 OP2 C B 651 34.570 88.973 34.888 1.00 37.91 O
ATOM 5 O5' C B 651 35.979 90.410 36.315 1.00 40.58 O
ATOM 6 C5' C B 651 36.256 91.216 37.463 1.00 43.56 C
ATOM 7 C4' C B 651 37.614 91.847 37.346 1.00 44.39 C
ATOM 8 O4' C B 651 38.617 90.813 37.238 1.00 44.89 O
ATOM 9 C3' C B 651 37.878 92.655 36.093 1.00 45.24 C
ATOM 10 O3' C B 651 37.276 93.935 36.174 1.00 47.10 O
ATOM 11 C2' C B 651 39.394 92.755 36.134 1.00 45.15 C
ATOM 12 O2' C B 651 39.820 93.691 37.104 1.00 46.06 O
ATOM 13 C1' C B 651 39.770 91.359 36.632 1.00 44.72 C
ATOM 14 N1 C B 651 40.224 90.450 35.575 1.00 46.54 N
ATOM 15 C2 C B 651 41.598 90.329 35.342 1.00 49.06 C
ATOM 16 O2 C B 651 42.384 90.992 36.031 1.00 51.01 O
ATOM 17 N3 C B 651 42.038 89.498 34.373 1.00 49.21 N
ATOM 18 C4 C B 651 41.164 88.805 33.646 1.00 49.28 C
ATOM 19 N4 C B 651 41.646 87.997 32.696 1.00 48.84 N
ATOM 20 C5 C B 651 39.755 88.908 33.860 1.00 49.13 C
ATOM 21 C6 C B 651 39.334 89.733 34.827 1.00 47.73 C
ATOM 22 P U B 652 36.403 94.481 34.944 1.00 48.39 P
ATOM 23 OP1 U B 652 36.073 95.891 35.266 1.00 47.84 O
ATOM 24 OP2 U B 652 35.303 93.521 34.682 1.00 48.95 O
ATOM 25 O5' U B 652 37.413 94.404 33.711 1.00 46.44 O
TER
ATOM 2 P G A 645 24.620 89.675 43.698 1.00 42.85 P
ATOM 3 OP1 G A 645 23.326 89.452 43.041 1.00 43.38 O
ATOM 4 OP2 G A 645 25.174 88.629 44.582 1.00 43.38 O
ATOM 5 O5' G A 645 25.691 89.964 42.553 1.00 43.08 O
ATOM 6 C5' G A 645 25.442 90.955 41.536 1.00 41.32 C
ATOM 7 C4' G A 645 26.574 90.976 40.536 1.00 41.53 C
ATOM 8 O4' G A 645 27.802 91.334 41.211 1.00 41.62 O
ATOM 9 C3' G A 645 26.904 89.650 39.881 1.00 42.32 C
ATOM 10 O3' G A 645 26.029 89.374 38.794 1.00 43.62 O
ATOM 11 C2' G A 645 28.353 89.845 39.452 1.00 40.90 C
ATOM 12 O2' G A 645 28.493 90.636 38.289 1.00 41.31 O
ATOM 13 C1' G A 645 28.895 90.646 40.629 1.00 40.35 C
ATOM 14 N9 G A 645 29.522 89.842 41.668 1.00 41.22 N
ATOM 15 C8 G A 645 28.972 89.481 42.876 1.00 41.86 C
ATOM 16 N7 G A 645 29.794 88.804 43.630 1.00 42.57 N
ATOM 17 C5 G A 645 30.952 88.698 42.870 1.00 40.23 C
ATOM 18 C6 G A 645 32.192 88.078 43.168 1.00 39.34 C
ATOM 19 O6 G A 645 32.531 87.494 44.206 1.00 38.30 O
ATOM 20 N1 G A 645 33.090 88.196 42.112 1.00 40.97 N
ATOM 21 C2 G A 645 32.833 88.843 40.923 1.00 42.70 C
ATOM 22 N2 G A 645 33.834 88.853 40.013 1.00 41.09 N
ATOM 23 N3 G A 645 31.682 89.437 40.641 1.00 42.21 N
ATOM 24 C4 G A 645 30.795 89.323 41.650 1.00 41.02 C
ATOM 25 P C A 646 25.500 87.876 38.571 1.00 43.55 P
ATOM 26 OP1 C A 646 24.496 87.935 37.477 1.00 43.55 O
ATOM 27 OP2 C A 646 25.106 87.348 39.906 1.00 44.05 O
ATOM 28 O5' C A 646 26.784 87.084 38.051 1.00 39.29 O
TER
ATOM 1 O3' U B 650 34.980 88.328 37.296 1.00 38.10 O
ATOM 2 P C B 651 34.668 89.515 36.266 1.00 40.78 P
ATOM 3 OP1 C B 651 33.536 90.290 36.841 1.00 37.75 O
ATOM 4 OP2 C B 651 34.570 88.973 34.888 1.00 37.91 O
ATOM 5 O5' C B 651 35.979 90.410 36.315 1.00 40.58 O
ATOM 6 C5' C B 651 36.256 91.216 37.463 1.00 43.56 C
ATOM 7 C4' C B 651 37.614 91.847 37.346 1.00 44.39 C
ATOM 8 O4' C B 651 38.617 90.813 37.238 1.00 44.89 O
ATOM 9 C3' C B 651 37.878 92.655 36.093 1.00 45.24 C
ATOM 10 O3' C B 651 37.276 93.935 36.174 1.00 47.10 O
ATOM 11 C2' C B 651 39.394 92.755 36.134 1.00 45.15 C
ATOM 12 O2' C B 651 39.820 93.691 37.104 1.00 46.06 O
ATOM 13 C1' C B 651 39.770 91.359 36.632 1.00 44.72 C
ATOM 14 N1 C B 651 40.224 90.450 35.575 1.00 46.54 N
ATOM 15 C2 C B 651 41.598 90.329 35.342 1.00 49.06 C
ATOM 16 O2 C B 651 42.384 90.992 36.031 1.00 51.01 O
ATOM 17 N3 C B 651 42.038 89.498 34.373 1.00 49.21 N
ATOM 18 C4 C B 651 41.164 88.805 33.646 1.00 49.28 C
ATOM 19 N4 C B 651 41.646 87.997 32.696 1.00 48.84 N
ATOM 20 C5 C B 651 39.755 88.908 33.860 1.00 49.13 C
ATOM 21 C6 C B 651 39.334 89.733 34.827 1.00 47.73 C
ATOM 22 P U B 652 36.403 94.481 34.944 1.00 48.39 P
ATOM 23 OP1 U B 652 36.073 95.891 35.266 1.00 47.84 O
ATOM 24 OP2 U B 652 35.303 93.521 34.682 1.00 48.95 O
ATOM 25 O5' U B 652 37.413 94.404 33.711 1.00 46.44 O
TER
Atoms:
OP1: (23.326,89.452,43.041)
OP2: (25.174,88.629,44.582)
C3': (26.904,89.650,39.881)
C1': (28.895,90.646,40.629)
C5': (25.442,90.955,41.536)
O6: (32.531,87.494,44.206)
O4': (27.802,91.334,41.211)
C8: (28.972,89.481,42.876)
C2: (32.833,88.843,40.923)
C6: (32.192,88.078,43.168)
C5: (30.952,88.698,42.870)
C4: (30.795,89.323,41.650)
P: (24.620,89.675,43.698)
C4': (26.574,90.976,40.536)
C2': (28.353,89.845,39.452)
O2': (28.493,90.636,38.289)
N1: (33.090,88.196,42.112)
N2: (33.834,88.853,40.013)
N3: (31.682,89.437,40.641)
N7: (29.794,88.804,43.630)
N9: (29.522,89.842,41.668)
O5': (25.691,89.964,42.553)
O3': (26.029,89.374,38.794)
OP2: (25.174,88.629,44.582)
C3': (26.904,89.650,39.881)
C1': (28.895,90.646,40.629)
C5': (25.442,90.955,41.536)
O6: (32.531,87.494,44.206)
O4': (27.802,91.334,41.211)
C8: (28.972,89.481,42.876)
C2: (32.833,88.843,40.923)
C6: (32.192,88.078,43.168)
C5: (30.952,88.698,42.870)
C4: (30.795,89.323,41.650)
P: (24.620,89.675,43.698)
C4': (26.574,90.976,40.536)
C2': (28.353,89.845,39.452)
O2': (28.493,90.636,38.289)
N1: (33.090,88.196,42.112)
N2: (33.834,88.853,40.013)
N3: (31.682,89.437,40.641)
N7: (29.794,88.804,43.630)
N9: (29.522,89.842,41.668)
O5': (25.691,89.964,42.553)
O3': (26.029,89.374,38.794)
C2: (41.598,90.329,35.342)
OP1: (33.536,90.290,36.841)
OP2: (34.570,88.973,34.888)
C4: (41.164,88.805,33.646)
O5': (35.979,90.410,36.315)
C3': (37.878,92.655,36.093)
C1': (39.770,91.359,36.632)
O4': (38.617,90.813,37.238)
C5': (36.256,91.216,37.463)
P: (34.668,89.515,36.266)
O2: (42.384,90.992,36.031)
C4': (37.614,91.847,37.346)
C2': (39.394,92.755,36.134)
O2': (39.820,93.691,37.104)
N1: (40.224,90.450,35.575)
N3: (42.038,89.498,34.373)
N4: (41.646,87.997,32.696)
C6: (39.334,89.733,34.827)
C5: (39.755,88.908,33.860)
O3': (37.276,93.935,36.174)
OP1: (33.536,90.290,36.841)
OP2: (34.570,88.973,34.888)
C4: (41.164,88.805,33.646)
O5': (35.979,90.410,36.315)
C3': (37.878,92.655,36.093)
C1': (39.770,91.359,36.632)
O4': (38.617,90.813,37.238)
C5': (36.256,91.216,37.463)
P: (34.668,89.515,36.266)
O2: (42.384,90.992,36.031)
C4': (37.614,91.847,37.346)
C2': (39.394,92.755,36.134)
O2': (39.820,93.691,37.104)
N1: (40.224,90.450,35.575)
N3: (42.038,89.498,34.373)
N4: (41.646,87.997,32.696)
C6: (39.334,89.733,34.827)
C5: (39.755,88.908,33.860)
O3': (37.276,93.935,36.174)
Image (generated by PyMOL):