Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A645:A651
Extra
PDB:
ATOM 1 O3' G A 644 24.711 91.082 44.988 1.00 44.48 O
ATOM 2 P G A 645 24.740 89.708 44.149 1.00 43.61 P
ATOM 3 OP1 G A 645 23.416 89.561 43.538 1.00 44.47 O
ATOM 4 OP2 G A 645 25.275 88.622 45.001 1.00 43.05 O
ATOM 5 O5' G A 645 25.797 89.984 42.986 1.00 42.97 O
ATOM 6 C5' G A 645 25.509 90.932 41.930 1.00 41.80 C
ATOM 7 C4' G A 645 26.649 90.982 40.950 1.00 41.88 C
ATOM 8 O4' G A 645 27.852 91.409 41.635 1.00 43.40 O
ATOM 9 C3' G A 645 27.027 89.631 40.373 1.00 42.93 C
ATOM 10 O3' G A 645 26.198 89.261 39.276 1.00 43.16 O
ATOM 11 C2' G A 645 28.480 89.827 39.970 1.00 42.83 C
ATOM 12 O2' G A 645 28.640 90.539 38.762 1.00 43.81 O
ATOM 13 C1' G A 645 28.981 90.707 41.111 1.00 43.62 C
ATOM 14 N9 G A 645 29.642 89.956 42.181 1.00 44.59 N
ATOM 15 C8 G A 645 29.117 89.595 43.402 1.00 46.25 C
ATOM 16 N7 G A 645 29.961 88.932 44.143 1.00 46.67 N
ATOM 17 C5 G A 645 31.111 88.855 43.373 1.00 44.70 C
ATOM 18 C6 G A 645 32.353 88.260 43.662 1.00 45.07 C
ATOM 19 O6 G A 645 32.704 87.679 44.692 1.00 46.51 O
ATOM 20 N1 G A 645 33.236 88.387 42.605 1.00 44.90 N
ATOM 21 C2 G A 645 32.953 89.008 41.415 1.00 44.74 C
ATOM 22 N2 G A 645 33.940 88.998 40.486 1.00 45.37 N
ATOM 23 N3 G A 645 31.797 89.585 41.143 1.00 44.43 N
ATOM 24 C4 G A 645 30.930 89.470 42.158 1.00 44.24 C
ATOM 25 P C A 646 25.680 87.744 39.154 1.00 42.99 P
ATOM 26 OP1 C A 646 24.674 87.778 38.075 1.00 43.19 O
ATOM 27 OP2 C A 646 25.294 87.254 40.517 1.00 42.64 O
ATOM 28 O5' C A 646 26.943 86.938 38.618 1.00 38.66 O
TER
ATOM 1 O3' U B 650 35.092 88.289 37.724 1.00 40.61 O
ATOM 2 P C B 651 34.822 89.529 36.752 1.00 42.95 P
ATOM 3 OP1 C B 651 33.783 90.312 37.444 1.00 41.80 O
ATOM 4 OP2 C B 651 34.608 89.091 35.342 1.00 43.27 O
ATOM 5 O5' C B 651 36.170 90.372 36.788 1.00 44.11 O
ATOM 6 C5' C B 651 36.451 91.251 37.887 1.00 46.45 C
ATOM 7 C4' C B 651 37.813 91.831 37.724 1.00 47.56 C
ATOM 8 O4' C B 651 38.784 90.770 37.615 1.00 46.94 O
ATOM 9 C3' C B 651 38.010 92.554 36.411 1.00 49.00 C
ATOM 10 O3' C B 651 37.408 93.838 36.495 1.00 50.22 O
ATOM 11 C2' C B 651 39.526 92.632 36.348 1.00 48.70 C
ATOM 12 O2' C B 651 40.000 93.646 37.217 1.00 50.28 O
ATOM 13 C1' C B 651 39.918 91.278 36.950 1.00 47.84 C
ATOM 14 N1 C B 651 40.381 90.287 35.972 1.00 48.45 N
ATOM 15 C2 C B 651 41.764 90.145 35.759 1.00 50.26 C
ATOM 16 O2 C B 651 42.539 90.864 36.385 1.00 51.90 O
ATOM 17 N3 C B 651 42.210 89.234 34.869 1.00 50.09 N
ATOM 18 C4 C B 651 41.334 88.488 34.190 1.00 49.67 C
ATOM 19 N4 C B 651 41.817 87.611 33.304 1.00 48.25 N
ATOM 20 C5 C B 651 39.917 88.612 34.386 1.00 49.37 C
ATOM 21 C6 C B 651 39.493 89.514 35.278 1.00 48.40 C
ATOM 22 P U B 652 36.444 94.341 35.321 1.00 50.99 P
ATOM 23 OP1 U B 652 35.950 95.651 35.773 1.00 51.52 O
ATOM 24 OP2 U B 652 35.462 93.270 35.003 1.00 53.34 O
ATOM 25 O5' U B 652 37.441 94.490 34.084 1.00 49.05 O
TER
ATOM 2 P G A 645 24.740 89.708 44.149 1.00 43.61 P
ATOM 3 OP1 G A 645 23.416 89.561 43.538 1.00 44.47 O
ATOM 4 OP2 G A 645 25.275 88.622 45.001 1.00 43.05 O
ATOM 5 O5' G A 645 25.797 89.984 42.986 1.00 42.97 O
ATOM 6 C5' G A 645 25.509 90.932 41.930 1.00 41.80 C
ATOM 7 C4' G A 645 26.649 90.982 40.950 1.00 41.88 C
ATOM 8 O4' G A 645 27.852 91.409 41.635 1.00 43.40 O
ATOM 9 C3' G A 645 27.027 89.631 40.373 1.00 42.93 C
ATOM 10 O3' G A 645 26.198 89.261 39.276 1.00 43.16 O
ATOM 11 C2' G A 645 28.480 89.827 39.970 1.00 42.83 C
ATOM 12 O2' G A 645 28.640 90.539 38.762 1.00 43.81 O
ATOM 13 C1' G A 645 28.981 90.707 41.111 1.00 43.62 C
ATOM 14 N9 G A 645 29.642 89.956 42.181 1.00 44.59 N
ATOM 15 C8 G A 645 29.117 89.595 43.402 1.00 46.25 C
ATOM 16 N7 G A 645 29.961 88.932 44.143 1.00 46.67 N
ATOM 17 C5 G A 645 31.111 88.855 43.373 1.00 44.70 C
ATOM 18 C6 G A 645 32.353 88.260 43.662 1.00 45.07 C
ATOM 19 O6 G A 645 32.704 87.679 44.692 1.00 46.51 O
ATOM 20 N1 G A 645 33.236 88.387 42.605 1.00 44.90 N
ATOM 21 C2 G A 645 32.953 89.008 41.415 1.00 44.74 C
ATOM 22 N2 G A 645 33.940 88.998 40.486 1.00 45.37 N
ATOM 23 N3 G A 645 31.797 89.585 41.143 1.00 44.43 N
ATOM 24 C4 G A 645 30.930 89.470 42.158 1.00 44.24 C
ATOM 25 P C A 646 25.680 87.744 39.154 1.00 42.99 P
ATOM 26 OP1 C A 646 24.674 87.778 38.075 1.00 43.19 O
ATOM 27 OP2 C A 646 25.294 87.254 40.517 1.00 42.64 O
ATOM 28 O5' C A 646 26.943 86.938 38.618 1.00 38.66 O
TER
ATOM 1 O3' U B 650 35.092 88.289 37.724 1.00 40.61 O
ATOM 2 P C B 651 34.822 89.529 36.752 1.00 42.95 P
ATOM 3 OP1 C B 651 33.783 90.312 37.444 1.00 41.80 O
ATOM 4 OP2 C B 651 34.608 89.091 35.342 1.00 43.27 O
ATOM 5 O5' C B 651 36.170 90.372 36.788 1.00 44.11 O
ATOM 6 C5' C B 651 36.451 91.251 37.887 1.00 46.45 C
ATOM 7 C4' C B 651 37.813 91.831 37.724 1.00 47.56 C
ATOM 8 O4' C B 651 38.784 90.770 37.615 1.00 46.94 O
ATOM 9 C3' C B 651 38.010 92.554 36.411 1.00 49.00 C
ATOM 10 O3' C B 651 37.408 93.838 36.495 1.00 50.22 O
ATOM 11 C2' C B 651 39.526 92.632 36.348 1.00 48.70 C
ATOM 12 O2' C B 651 40.000 93.646 37.217 1.00 50.28 O
ATOM 13 C1' C B 651 39.918 91.278 36.950 1.00 47.84 C
ATOM 14 N1 C B 651 40.381 90.287 35.972 1.00 48.45 N
ATOM 15 C2 C B 651 41.764 90.145 35.759 1.00 50.26 C
ATOM 16 O2 C B 651 42.539 90.864 36.385 1.00 51.90 O
ATOM 17 N3 C B 651 42.210 89.234 34.869 1.00 50.09 N
ATOM 18 C4 C B 651 41.334 88.488 34.190 1.00 49.67 C
ATOM 19 N4 C B 651 41.817 87.611 33.304 1.00 48.25 N
ATOM 20 C5 C B 651 39.917 88.612 34.386 1.00 49.37 C
ATOM 21 C6 C B 651 39.493 89.514 35.278 1.00 48.40 C
ATOM 22 P U B 652 36.444 94.341 35.321 1.00 50.99 P
ATOM 23 OP1 U B 652 35.950 95.651 35.773 1.00 51.52 O
ATOM 24 OP2 U B 652 35.462 93.270 35.003 1.00 53.34 O
ATOM 25 O5' U B 652 37.441 94.490 34.084 1.00 49.05 O
TER
Atoms:
OP1: (23.416,89.561,43.538)
OP2: (25.275,88.622,45.001)
C3': (27.027,89.631,40.373)
C1': (28.981,90.707,41.111)
C5': (25.509,90.932,41.930)
O6: (32.704,87.679,44.692)
O4': (27.852,91.409,41.635)
C8: (29.117,89.595,43.402)
C2: (32.953,89.008,41.415)
C6: (32.353,88.260,43.662)
C5: (31.111,88.855,43.373)
C4: (30.930,89.470,42.158)
P: (24.740,89.708,44.149)
C4': (26.649,90.982,40.950)
C2': (28.480,89.827,39.970)
O2': (28.640,90.539,38.762)
N1: (33.236,88.387,42.605)
N2: (33.940,88.998,40.486)
N3: (31.797,89.585,41.143)
N7: (29.961,88.932,44.143)
N9: (29.642,89.956,42.181)
O5': (25.797,89.984,42.986)
O3': (26.198,89.261,39.276)
OP2: (25.275,88.622,45.001)
C3': (27.027,89.631,40.373)
C1': (28.981,90.707,41.111)
C5': (25.509,90.932,41.930)
O6: (32.704,87.679,44.692)
O4': (27.852,91.409,41.635)
C8: (29.117,89.595,43.402)
C2: (32.953,89.008,41.415)
C6: (32.353,88.260,43.662)
C5: (31.111,88.855,43.373)
C4: (30.930,89.470,42.158)
P: (24.740,89.708,44.149)
C4': (26.649,90.982,40.950)
C2': (28.480,89.827,39.970)
O2': (28.640,90.539,38.762)
N1: (33.236,88.387,42.605)
N2: (33.940,88.998,40.486)
N3: (31.797,89.585,41.143)
N7: (29.961,88.932,44.143)
N9: (29.642,89.956,42.181)
O5': (25.797,89.984,42.986)
O3': (26.198,89.261,39.276)
C2: (41.764,90.145,35.759)
OP1: (33.783,90.312,37.444)
OP2: (34.608,89.091,35.342)
C4: (41.334,88.488,34.190)
O5': (36.170,90.372,36.788)
C3': (38.010,92.554,36.411)
C1': (39.918,91.278,36.950)
O4': (38.784,90.770,37.615)
C5': (36.451,91.251,37.887)
P: (34.822,89.529,36.752)
O2: (42.539,90.864,36.385)
C4': (37.813,91.831,37.724)
C2': (39.526,92.632,36.348)
O2': (40.000,93.646,37.217)
N1: (40.381,90.287,35.972)
N3: (42.210,89.234,34.869)
N4: (41.817,87.611,33.304)
C6: (39.493,89.514,35.278)
C5: (39.917,88.612,34.386)
O3': (37.408,93.838,36.495)
OP1: (33.783,90.312,37.444)
OP2: (34.608,89.091,35.342)
C4: (41.334,88.488,34.190)
O5': (36.170,90.372,36.788)
C3': (38.010,92.554,36.411)
C1': (39.918,91.278,36.950)
O4': (38.784,90.770,37.615)
C5': (36.451,91.251,37.887)
P: (34.822,89.529,36.752)
O2: (42.539,90.864,36.385)
C4': (37.813,91.831,37.724)
C2': (39.526,92.632,36.348)
O2': (40.000,93.646,37.217)
N1: (40.381,90.287,35.972)
N3: (42.210,89.234,34.869)
N4: (41.817,87.611,33.304)
C6: (39.493,89.514,35.278)
C5: (39.917,88.612,34.386)
O3': (37.408,93.838,36.495)
Image (generated by PyMOL):