Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1040:A614
Extra
PDB:
ATOM 1 O3' C A1039 37.424 106.612 103.415 1.00 52.20 O
ATOM 2 P A A1040 38.184 107.283 102.167 1.00 54.06 P
ATOM 3 OP1 A A1040 39.399 107.971 102.670 1.00 53.49 O
ATOM 4 OP2 A A1040 37.197 108.032 101.337 1.00 54.86 O
ATOM 5 O5' A A1040 38.658 106.025 101.315 1.00 49.77 O
ATOM 6 C5' A A1040 38.758 104.739 101.925 1.00 43.68 C
ATOM 7 C4' A A1040 38.781 103.665 100.884 1.00 41.34 C
ATOM 8 O4' A A1040 39.813 103.942 99.915 1.00 39.52 O
ATOM 9 C3' A A1040 39.145 102.306 101.443 1.00 40.71 C
ATOM 10 O3' A A1040 37.980 101.659 101.933 1.00 38.92 O
ATOM 11 C2' A A1040 39.679 101.580 100.216 1.00 41.17 C
ATOM 12 O2' A A1040 38.668 101.023 99.410 1.00 43.70 O
ATOM 13 C1' A A1040 40.351 102.720 99.448 1.00 39.76 C
ATOM 14 N9 A A1040 41.802 102.732 99.624 1.00 39.46 N
ATOM 15 C8 A A1040 42.556 103.291 100.617 1.00 38.66 C
ATOM 16 N7 A A1040 43.839 103.086 100.480 1.00 39.51 N
ATOM 17 C5 A A1040 43.943 102.350 99.311 1.00 37.65 C
ATOM 18 C6 A A1040 45.054 101.807 98.612 1.00 36.07 C
ATOM 19 N6 A A1040 46.319 101.928 99.004 1.00 32.41 N
ATOM 20 N1 A A1040 44.804 101.121 97.482 1.00 36.66 N
ATOM 21 C2 A A1040 43.537 100.990 97.085 1.00 36.18 C
ATOM 22 N3 A A1040 42.424 101.448 97.648 1.00 37.41 N
ATOM 23 C4 A A1040 42.697 102.127 98.772 1.00 38.06 C
ATOM 24 P A A1041 37.806 101.367 103.502 1.00 38.06 P
ATOM 25 OP1 A A1041 36.402 101.715 103.797 1.00 38.02 O
ATOM 26 OP2 A A1041 38.890 101.966 104.300 1.00 36.50 O
ATOM 27 O5' A A1041 37.978 99.793 103.598 1.00 36.35 O
TER
ATOM 1 O3' U B 613 50.910 104.172 90.865 1.00 30.74 O
ATOM 2 P U B 614 50.418 102.662 90.586 1.00 30.90 P
ATOM 3 OP1 U B 614 51.520 101.695 90.817 1.00 29.99 O
ATOM 4 OP2 U B 614 49.670 102.602 89.316 1.00 29.30 O
ATOM 5 O5' U B 614 49.364 102.434 91.740 1.00 29.82 O
ATOM 6 C5' U B 614 48.443 101.362 91.662 1.00 31.14 C
ATOM 7 C4' U B 614 47.928 101.035 93.028 1.00 30.61 C
ATOM 8 O4' U B 614 49.019 100.656 93.896 1.00 30.16 O
ATOM 9 C3' U B 614 47.252 102.176 93.756 1.00 30.53 C
ATOM 10 O3' U B 614 45.908 102.215 93.327 1.00 28.56 O
ATOM 11 C2' U B 614 47.327 101.709 95.199 1.00 30.63 C
ATOM 12 O2' U B 614 46.337 100.745 95.454 1.00 30.61 O
ATOM 13 C1' U B 614 48.692 101.013 95.228 1.00 30.53 C
ATOM 14 N1 U B 614 49.759 101.871 95.760 1.00 32.36 N
ATOM 15 C2 U B 614 49.788 102.097 97.113 1.00 32.44 C
ATOM 16 O2 U B 614 48.980 101.631 97.881 1.00 35.00 O
ATOM 17 N3 U B 614 50.804 102.896 97.542 1.00 33.19 N
ATOM 18 C4 U B 614 51.782 103.479 96.771 1.00 34.99 C
ATOM 19 O4 U B 614 52.698 104.093 97.314 1.00 36.17 O
ATOM 20 C5 U B 614 51.678 103.210 95.382 1.00 34.01 C
ATOM 21 C6 U B 614 50.696 102.431 94.936 1.00 33.73 C
ATOM 22 P G B 615 45.281 103.572 92.770 1.00 30.34 P
ATOM 23 OP1 G B 615 43.980 103.228 92.190 1.00 31.30 O
ATOM 24 OP2 G B 615 46.288 104.268 91.938 1.00 31.80 O
ATOM 25 O5' G B 615 45.011 104.424 94.080 1.00 29.24 O
TER
ATOM 2 P A A1040 38.184 107.283 102.167 1.00 54.06 P
ATOM 3 OP1 A A1040 39.399 107.971 102.670 1.00 53.49 O
ATOM 4 OP2 A A1040 37.197 108.032 101.337 1.00 54.86 O
ATOM 5 O5' A A1040 38.658 106.025 101.315 1.00 49.77 O
ATOM 6 C5' A A1040 38.758 104.739 101.925 1.00 43.68 C
ATOM 7 C4' A A1040 38.781 103.665 100.884 1.00 41.34 C
ATOM 8 O4' A A1040 39.813 103.942 99.915 1.00 39.52 O
ATOM 9 C3' A A1040 39.145 102.306 101.443 1.00 40.71 C
ATOM 10 O3' A A1040 37.980 101.659 101.933 1.00 38.92 O
ATOM 11 C2' A A1040 39.679 101.580 100.216 1.00 41.17 C
ATOM 12 O2' A A1040 38.668 101.023 99.410 1.00 43.70 O
ATOM 13 C1' A A1040 40.351 102.720 99.448 1.00 39.76 C
ATOM 14 N9 A A1040 41.802 102.732 99.624 1.00 39.46 N
ATOM 15 C8 A A1040 42.556 103.291 100.617 1.00 38.66 C
ATOM 16 N7 A A1040 43.839 103.086 100.480 1.00 39.51 N
ATOM 17 C5 A A1040 43.943 102.350 99.311 1.00 37.65 C
ATOM 18 C6 A A1040 45.054 101.807 98.612 1.00 36.07 C
ATOM 19 N6 A A1040 46.319 101.928 99.004 1.00 32.41 N
ATOM 20 N1 A A1040 44.804 101.121 97.482 1.00 36.66 N
ATOM 21 C2 A A1040 43.537 100.990 97.085 1.00 36.18 C
ATOM 22 N3 A A1040 42.424 101.448 97.648 1.00 37.41 N
ATOM 23 C4 A A1040 42.697 102.127 98.772 1.00 38.06 C
ATOM 24 P A A1041 37.806 101.367 103.502 1.00 38.06 P
ATOM 25 OP1 A A1041 36.402 101.715 103.797 1.00 38.02 O
ATOM 26 OP2 A A1041 38.890 101.966 104.300 1.00 36.50 O
ATOM 27 O5' A A1041 37.978 99.793 103.598 1.00 36.35 O
TER
ATOM 1 O3' U B 613 50.910 104.172 90.865 1.00 30.74 O
ATOM 2 P U B 614 50.418 102.662 90.586 1.00 30.90 P
ATOM 3 OP1 U B 614 51.520 101.695 90.817 1.00 29.99 O
ATOM 4 OP2 U B 614 49.670 102.602 89.316 1.00 29.30 O
ATOM 5 O5' U B 614 49.364 102.434 91.740 1.00 29.82 O
ATOM 6 C5' U B 614 48.443 101.362 91.662 1.00 31.14 C
ATOM 7 C4' U B 614 47.928 101.035 93.028 1.00 30.61 C
ATOM 8 O4' U B 614 49.019 100.656 93.896 1.00 30.16 O
ATOM 9 C3' U B 614 47.252 102.176 93.756 1.00 30.53 C
ATOM 10 O3' U B 614 45.908 102.215 93.327 1.00 28.56 O
ATOM 11 C2' U B 614 47.327 101.709 95.199 1.00 30.63 C
ATOM 12 O2' U B 614 46.337 100.745 95.454 1.00 30.61 O
ATOM 13 C1' U B 614 48.692 101.013 95.228 1.00 30.53 C
ATOM 14 N1 U B 614 49.759 101.871 95.760 1.00 32.36 N
ATOM 15 C2 U B 614 49.788 102.097 97.113 1.00 32.44 C
ATOM 16 O2 U B 614 48.980 101.631 97.881 1.00 35.00 O
ATOM 17 N3 U B 614 50.804 102.896 97.542 1.00 33.19 N
ATOM 18 C4 U B 614 51.782 103.479 96.771 1.00 34.99 C
ATOM 19 O4 U B 614 52.698 104.093 97.314 1.00 36.17 O
ATOM 20 C5 U B 614 51.678 103.210 95.382 1.00 34.01 C
ATOM 21 C6 U B 614 50.696 102.431 94.936 1.00 33.73 C
ATOM 22 P G B 615 45.281 103.572 92.770 1.00 30.34 P
ATOM 23 OP1 G B 615 43.980 103.228 92.190 1.00 31.30 O
ATOM 24 OP2 G B 615 46.288 104.268 91.938 1.00 31.80 O
ATOM 25 O5' G B 615 45.011 104.424 94.080 1.00 29.24 O
TER
Atoms:
OP1: (39.399,107.971,102.670)
OP2: (37.197,108.032,101.337)
C3': (39.145,102.306,101.443)
C1': (40.351,102.720,99.448)
C5': (38.758,104.739,101.925)
O4': (39.813,103.942,99.915)
C8: (42.556,103.291,100.617)
O2': (38.668,101.023,99.410)
C6: (45.054,101.807,98.612)
C5: (43.943,102.350,99.311)
C4: (42.697,102.127,98.772)
P: (38.184,107.283,102.167)
C4': (38.781,103.665,100.884)
C2': (39.679,101.580,100.216)
C2: (43.537,100.990,97.085)
N1: (44.804,101.121,97.482)
N3: (42.424,101.448,97.648)
N6: (46.319,101.928,99.004)
N7: (43.839,103.086,100.480)
N9: (41.802,102.732,99.624)
O5': (38.658,106.025,101.315)
O3': (37.980,101.659,101.933)
OP2: (37.197,108.032,101.337)
C3': (39.145,102.306,101.443)
C1': (40.351,102.720,99.448)
C5': (38.758,104.739,101.925)
O4': (39.813,103.942,99.915)
C8: (42.556,103.291,100.617)
O2': (38.668,101.023,99.410)
C6: (45.054,101.807,98.612)
C5: (43.943,102.350,99.311)
C4: (42.697,102.127,98.772)
P: (38.184,107.283,102.167)
C4': (38.781,103.665,100.884)
C2': (39.679,101.580,100.216)
C2: (43.537,100.990,97.085)
N1: (44.804,101.121,97.482)
N3: (42.424,101.448,97.648)
N6: (46.319,101.928,99.004)
N7: (43.839,103.086,100.480)
N9: (41.802,102.732,99.624)
O5': (38.658,106.025,101.315)
O3': (37.980,101.659,101.933)
C4: (51.782,103.479,96.771)
N3: (50.804,102.896,97.542)
OP1: (51.520,101.695,90.817)
OP2: (49.670,102.602,89.316)
C2: (49.788,102.097,97.113)
C1': (48.692,101.013,95.228)
C3': (47.252,102.176,93.756)
O5': (49.364,102.434,91.740)
O4': (49.019,100.656,93.896)
C5': (48.443,101.362,91.662)
P: (50.418,102.662,90.586)
C4': (47.928,101.035,93.028)
C2': (47.327,101.709,95.199)
O2': (46.337,100.745,95.454)
N1: (49.759,101.871,95.760)
O4: (52.698,104.093,97.314)
O2: (48.980,101.631,97.881)
C6: (50.696,102.431,94.936)
C5: (51.678,103.210,95.382)
O3': (45.908,102.215,93.327)
N3: (50.804,102.896,97.542)
OP1: (51.520,101.695,90.817)
OP2: (49.670,102.602,89.316)
C2: (49.788,102.097,97.113)
C1': (48.692,101.013,95.228)
C3': (47.252,102.176,93.756)
O5': (49.364,102.434,91.740)
O4': (49.019,100.656,93.896)
C5': (48.443,101.362,91.662)
P: (50.418,102.662,90.586)
C4': (47.928,101.035,93.028)
C2': (47.327,101.709,95.199)
O2': (46.337,100.745,95.454)
N1: (49.759,101.871,95.760)
O4: (52.698,104.093,97.314)
O2: (48.980,101.631,97.881)
C6: (50.696,102.431,94.936)
C5: (51.678,103.210,95.382)
O3': (45.908,102.215,93.327)
Image (generated by PyMOL):