Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1NYI:B5:A9
Extra
PDB:
ATOM 1 O3' A A 4 20.606 -10.002 20.448 1.00 53.93 O
ATOM 2 P A A 5 21.621 -9.160 19.523 1.00 55.55 P
ATOM 3 OP1 A A 5 21.537 -9.735 18.166 1.00 55.94 O
ATOM 4 OP2 A A 5 22.975 -9.015 20.125 1.00 54.35 O
ATOM 5 O5' A A 5 20.900 -7.723 19.539 1.00 55.14 O
ATOM 6 C5' A A 5 19.488 -7.648 19.290 1.00 54.72 C
ATOM 7 C4' A A 5 18.915 -6.264 19.567 1.00 54.76 C
ATOM 8 O4' A A 5 18.711 -6.074 21.002 1.00 54.37 O
ATOM 9 C3' A A 5 19.751 -5.058 19.121 1.00 54.17 C
ATOM 10 O3' A A 5 19.558 -4.749 17.737 1.00 53.60 O
ATOM 11 C2' A A 5 19.155 -3.988 20.030 1.00 54.19 C
ATOM 12 O2' A A 5 17.895 -3.540 19.564 1.00 54.19 O
ATOM 13 C1' A A 5 19.058 -4.745 21.366 1.00 52.93 C
ATOM 14 N9 A A 5 20.355 -4.718 22.062 1.00 50.64 N
ATOM 15 C8 A A 5 21.266 -5.729 22.170 1.00 49.78 C
ATOM 16 N7 A A 5 22.352 -5.406 22.826 1.00 48.91 N
ATOM 17 C5 A A 5 22.162 -4.090 23.161 1.00 47.68 C
ATOM 18 C6 A A 5 22.962 -3.164 23.858 1.00 47.41 C
ATOM 19 N6 A A 5 24.156 -3.467 24.363 1.00 46.79 N
ATOM 20 N1 A A 5 22.490 -1.908 24.030 1.00 47.37 N
ATOM 21 C2 A A 5 21.282 -1.616 23.527 1.00 47.74 C
ATOM 22 N3 A A 5 20.437 -2.402 22.851 1.00 48.52 N
ATOM 23 C4 A A 5 20.940 -3.645 22.700 1.00 49.18 C
ATOM 24 P A A 6 20.813 -4.384 16.796 1.00 53.17 P
ATOM 25 OP1 A A 6 20.388 -4.535 15.387 1.00 53.46 O
ATOM 26 OP2 A A 6 22.032 -5.091 17.242 1.00 52.42 O
ATOM 27 O5' A A 6 21.019 -2.828 17.130 1.00 52.35 O
TER
ATOM 1 O3' A B 8 27.923 4.624 26.404 1.00 30.33 O
ATOM 2 P U B 9 26.924 5.104 27.544 1.00 30.97 P
ATOM 3 OP1 U B 9 26.519 6.496 27.292 1.00 32.53 O
ATOM 4 OP2 U B 9 27.522 4.837 28.865 1.00 32.43 O
ATOM 5 O5' U B 9 25.660 4.131 27.391 1.00 29.32 O
ATOM 6 C5' U B 9 24.827 4.362 26.297 1.00 30.26 C
ATOM 7 C4' U B 9 24.200 3.107 25.764 1.00 31.65 C
ATOM 8 O4' U B 9 25.235 2.336 25.101 1.00 33.38 O
ATOM 9 C3' U B 9 23.702 2.162 26.821 1.00 32.76 C
ATOM 10 O3' U B 9 22.397 2.507 27.199 1.00 32.72 O
ATOM 11 C2' U B 9 23.769 0.824 26.078 1.00 33.45 C
ATOM 12 O2' U B 9 22.731 0.719 25.126 1.00 36.91 O
ATOM 13 C1' U B 9 25.064 0.946 25.303 1.00 30.60 C
ATOM 14 N1 U B 9 26.249 0.500 26.016 1.00 28.67 N
ATOM 15 C2 U B 9 26.561 -0.859 26.155 1.00 30.60 C
ATOM 16 O2 U B 9 25.892 -1.794 25.724 1.00 31.53 O
ATOM 17 N3 U B 9 27.718 -1.113 26.850 1.00 28.40 N
ATOM 18 C4 U B 9 28.557 -0.159 27.376 1.00 28.02 C
ATOM 19 O4 U B 9 29.544 -0.515 27.972 1.00 27.97 O
ATOM 20 C5 U B 9 28.184 1.220 27.182 1.00 27.57 C
ATOM 21 C6 U B 9 27.068 1.484 26.519 1.00 26.54 C
ATOM 22 P G B 10 22.044 2.316 28.757 1.00 34.34 P
ATOM 23 OP1 G B 10 20.952 3.248 29.115 1.00 32.43 O
ATOM 24 OP2 G B 10 23.338 2.300 29.501 1.00 32.89 O
ATOM 25 O5' G B 10 21.433 0.835 28.816 1.00 35.58 O
TER
ATOM 2 P A A 5 21.621 -9.160 19.523 1.00 55.55 P
ATOM 3 OP1 A A 5 21.537 -9.735 18.166 1.00 55.94 O
ATOM 4 OP2 A A 5 22.975 -9.015 20.125 1.00 54.35 O
ATOM 5 O5' A A 5 20.900 -7.723 19.539 1.00 55.14 O
ATOM 6 C5' A A 5 19.488 -7.648 19.290 1.00 54.72 C
ATOM 7 C4' A A 5 18.915 -6.264 19.567 1.00 54.76 C
ATOM 8 O4' A A 5 18.711 -6.074 21.002 1.00 54.37 O
ATOM 9 C3' A A 5 19.751 -5.058 19.121 1.00 54.17 C
ATOM 10 O3' A A 5 19.558 -4.749 17.737 1.00 53.60 O
ATOM 11 C2' A A 5 19.155 -3.988 20.030 1.00 54.19 C
ATOM 12 O2' A A 5 17.895 -3.540 19.564 1.00 54.19 O
ATOM 13 C1' A A 5 19.058 -4.745 21.366 1.00 52.93 C
ATOM 14 N9 A A 5 20.355 -4.718 22.062 1.00 50.64 N
ATOM 15 C8 A A 5 21.266 -5.729 22.170 1.00 49.78 C
ATOM 16 N7 A A 5 22.352 -5.406 22.826 1.00 48.91 N
ATOM 17 C5 A A 5 22.162 -4.090 23.161 1.00 47.68 C
ATOM 18 C6 A A 5 22.962 -3.164 23.858 1.00 47.41 C
ATOM 19 N6 A A 5 24.156 -3.467 24.363 1.00 46.79 N
ATOM 20 N1 A A 5 22.490 -1.908 24.030 1.00 47.37 N
ATOM 21 C2 A A 5 21.282 -1.616 23.527 1.00 47.74 C
ATOM 22 N3 A A 5 20.437 -2.402 22.851 1.00 48.52 N
ATOM 23 C4 A A 5 20.940 -3.645 22.700 1.00 49.18 C
ATOM 24 P A A 6 20.813 -4.384 16.796 1.00 53.17 P
ATOM 25 OP1 A A 6 20.388 -4.535 15.387 1.00 53.46 O
ATOM 26 OP2 A A 6 22.032 -5.091 17.242 1.00 52.42 O
ATOM 27 O5' A A 6 21.019 -2.828 17.130 1.00 52.35 O
TER
ATOM 1 O3' A B 8 27.923 4.624 26.404 1.00 30.33 O
ATOM 2 P U B 9 26.924 5.104 27.544 1.00 30.97 P
ATOM 3 OP1 U B 9 26.519 6.496 27.292 1.00 32.53 O
ATOM 4 OP2 U B 9 27.522 4.837 28.865 1.00 32.43 O
ATOM 5 O5' U B 9 25.660 4.131 27.391 1.00 29.32 O
ATOM 6 C5' U B 9 24.827 4.362 26.297 1.00 30.26 C
ATOM 7 C4' U B 9 24.200 3.107 25.764 1.00 31.65 C
ATOM 8 O4' U B 9 25.235 2.336 25.101 1.00 33.38 O
ATOM 9 C3' U B 9 23.702 2.162 26.821 1.00 32.76 C
ATOM 10 O3' U B 9 22.397 2.507 27.199 1.00 32.72 O
ATOM 11 C2' U B 9 23.769 0.824 26.078 1.00 33.45 C
ATOM 12 O2' U B 9 22.731 0.719 25.126 1.00 36.91 O
ATOM 13 C1' U B 9 25.064 0.946 25.303 1.00 30.60 C
ATOM 14 N1 U B 9 26.249 0.500 26.016 1.00 28.67 N
ATOM 15 C2 U B 9 26.561 -0.859 26.155 1.00 30.60 C
ATOM 16 O2 U B 9 25.892 -1.794 25.724 1.00 31.53 O
ATOM 17 N3 U B 9 27.718 -1.113 26.850 1.00 28.40 N
ATOM 18 C4 U B 9 28.557 -0.159 27.376 1.00 28.02 C
ATOM 19 O4 U B 9 29.544 -0.515 27.972 1.00 27.97 O
ATOM 20 C5 U B 9 28.184 1.220 27.182 1.00 27.57 C
ATOM 21 C6 U B 9 27.068 1.484 26.519 1.00 26.54 C
ATOM 22 P G B 10 22.044 2.316 28.757 1.00 34.34 P
ATOM 23 OP1 G B 10 20.952 3.248 29.115 1.00 32.43 O
ATOM 24 OP2 G B 10 23.338 2.300 29.501 1.00 32.89 O
ATOM 25 O5' G B 10 21.433 0.835 28.816 1.00 35.58 O
TER
Atoms:
OP1: (21.537,-9.735,18.166)
OP2: (22.975,-9.015,20.125)
C3': (19.751,-5.058,19.121)
C1': (19.058,-4.745,21.366)
C5': (19.488,-7.648,19.290)
O4': (18.711,-6.074,21.002)
C8: (21.266,-5.729,22.170)
O2': (17.895,-3.540,19.564)
C6: (22.962,-3.164,23.858)
C5: (22.162,-4.090,23.161)
C4: (20.940,-3.645,22.700)
P: (21.621,-9.160,19.523)
C4': (18.915,-6.264,19.567)
C2': (19.155,-3.988,20.030)
C2: (21.282,-1.616,23.527)
N1: (22.490,-1.908,24.030)
N3: (20.437,-2.402,22.851)
N6: (24.156,-3.467,24.363)
N7: (22.352,-5.406,22.826)
N9: (20.355,-4.718,22.062)
O5': (20.900,-7.723,19.539)
O3': (19.558,-4.749,17.737)
OP2: (22.975,-9.015,20.125)
C3': (19.751,-5.058,19.121)
C1': (19.058,-4.745,21.366)
C5': (19.488,-7.648,19.290)
O4': (18.711,-6.074,21.002)
C8: (21.266,-5.729,22.170)
O2': (17.895,-3.540,19.564)
C6: (22.962,-3.164,23.858)
C5: (22.162,-4.090,23.161)
C4: (20.940,-3.645,22.700)
P: (21.621,-9.160,19.523)
C4': (18.915,-6.264,19.567)
C2': (19.155,-3.988,20.030)
C2: (21.282,-1.616,23.527)
N1: (22.490,-1.908,24.030)
N3: (20.437,-2.402,22.851)
N6: (24.156,-3.467,24.363)
N7: (22.352,-5.406,22.826)
N9: (20.355,-4.718,22.062)
O5': (20.900,-7.723,19.539)
O3': (19.558,-4.749,17.737)
C4: (28.557,-0.159,27.376)
N3: (27.718,-1.113,26.850)
OP1: (26.519,6.496,27.292)
OP2: (27.522,4.837,28.865)
C2: (26.561,-0.859,26.155)
C1': (25.064,0.946,25.303)
C3': (23.702,2.162,26.821)
O5': (25.660,4.131,27.391)
O4': (25.235,2.336,25.101)
C5': (24.827,4.362,26.297)
P: (26.924,5.104,27.544)
C4': (24.200,3.107,25.764)
C2': (23.769,0.824,26.078)
O2': (22.731,0.719,25.126)
N1: (26.249,0.500,26.016)
O4: (29.544,-0.515,27.972)
O2: (25.892,-1.794,25.724)
C6: (27.068,1.484,26.519)
C5: (28.184,1.220,27.182)
O3': (22.397,2.507,27.199)
N3: (27.718,-1.113,26.850)
OP1: (26.519,6.496,27.292)
OP2: (27.522,4.837,28.865)
C2: (26.561,-0.859,26.155)
C1': (25.064,0.946,25.303)
C3': (23.702,2.162,26.821)
O5': (25.660,4.131,27.391)
O4': (25.235,2.336,25.101)
C5': (24.827,4.362,26.297)
P: (26.924,5.104,27.544)
C4': (24.200,3.107,25.764)
C2': (23.769,0.824,26.078)
O2': (22.731,0.719,25.126)
N1: (26.249,0.500,26.016)
O4: (29.544,-0.515,27.972)
O2: (25.892,-1.794,25.724)
C6: (27.068,1.484,26.519)
C5: (28.184,1.220,27.182)
O3': (22.397,2.507,27.199)
Image (generated by PyMOL):