Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01040:0614
Extra
PDB:
ATOM 1 O3' C A1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 2 P A A1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 3 OP1 A A1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 4 OP2 A A1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 5 O5' A A1040 38.475 106.014 101.022 1.00 44.26 O
ATOM 6 C5' A A1040 38.730 104.738 101.624 1.00 34.17 C
ATOM 7 C4' A A1040 38.703 103.669 100.573 1.00 33.36 C
ATOM 8 O4' A A1040 39.742 103.935 99.607 1.00 31.89 O
ATOM 9 C3' A A1040 38.986 102.264 101.058 1.00 34.25 C
ATOM 10 O3' A A1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 11 C2' A A1040 39.473 101.583 99.783 1.00 34.55 C
ATOM 12 O2' A A1040 38.409 101.233 98.924 1.00 36.34 O
ATOM 13 C1' A A1040 40.251 102.715 99.110 1.00 31.59 C
ATOM 14 N9 A A1040 41.708 102.707 99.284 1.00 29.29 N
ATOM 15 C8 A A1040 42.452 103.284 100.285 1.00 27.84 C
ATOM 16 N7 A A1040 43.743 103.131 100.138 1.00 26.97 N
ATOM 17 C5 A A1040 43.862 102.397 98.966 1.00 27.79 C
ATOM 18 C6 A A1040 44.983 101.899 98.260 1.00 28.78 C
ATOM 19 N6 A A1040 46.249 102.082 98.643 1.00 25.60 N
ATOM 20 N1 A A1040 44.749 101.195 97.128 1.00 28.87 N
ATOM 21 C2 A A1040 43.482 101.012 96.740 1.00 26.25 C
ATOM 22 N3 A A1040 42.359 101.428 97.313 1.00 26.04 N
ATOM 23 C4 A A1040 42.618 102.122 98.434 1.00 26.75 C
ATOM 24 P A A1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 25 OP1 A A1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 26 OP2 A A1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 27 O5' A A1041 37.861 99.728 103.116 1.00 34.75 O
TER
ATOM 1 O3' U B 613 50.753 104.187 90.509 1.00 29.19 O
ATOM 2 P U B 614 50.310 102.681 90.139 1.00 28.08 P
ATOM 3 OP1 U B 614 51.487 101.793 90.290 1.00 26.67 O
ATOM 4 OP2 U B 614 49.582 102.703 88.847 1.00 27.19 O
ATOM 5 O5' U B 614 49.269 102.319 91.284 1.00 27.95 O
ATOM 6 C5' U B 614 48.472 101.128 91.208 1.00 27.40 C
ATOM 7 C4' U B 614 47.829 100.860 92.542 1.00 27.22 C
ATOM 8 O4' U B 614 48.855 100.542 93.516 1.00 26.24 O
ATOM 9 C3' U B 614 47.096 102.046 93.145 1.00 26.60 C
ATOM 10 O3' U B 614 45.777 102.128 92.625 1.00 25.08 O
ATOM 11 C2' U B 614 47.100 101.710 94.629 1.00 25.66 C
ATOM 12 O2' U B 614 46.107 100.768 94.954 1.00 24.89 O
ATOM 13 C1' U B 614 48.464 101.032 94.785 1.00 26.14 C
ATOM 14 N1 U B 614 49.543 101.874 95.329 1.00 28.09 N
ATOM 15 C2 U B 614 49.608 102.018 96.706 1.00 28.90 C
ATOM 16 O2 U B 614 48.795 101.534 97.461 1.00 31.31 O
ATOM 17 N3 U B 614 50.665 102.759 97.167 1.00 29.52 N
ATOM 18 C4 U B 614 51.640 103.372 96.413 1.00 29.64 C
ATOM 19 O4 U B 614 52.553 103.966 96.986 1.00 27.39 O
ATOM 20 C5 U B 614 51.493 103.211 94.991 1.00 27.81 C
ATOM 21 C6 U B 614 50.476 102.486 94.510 1.00 28.75 C
ATOM 22 P G B 615 45.176 103.546 92.170 1.00 29.29 P
ATOM 23 OP1 G B 615 43.857 103.220 91.574 1.00 27.30 O
ATOM 24 OP2 G B 615 46.179 104.260 91.357 1.00 28.39 O
ATOM 25 O5' G B 615 44.970 104.364 93.525 1.00 24.54 O
TER
ATOM 2 P A A1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 3 OP1 A A1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 4 OP2 A A1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 5 O5' A A1040 38.475 106.014 101.022 1.00 44.26 O
ATOM 6 C5' A A1040 38.730 104.738 101.624 1.00 34.17 C
ATOM 7 C4' A A1040 38.703 103.669 100.573 1.00 33.36 C
ATOM 8 O4' A A1040 39.742 103.935 99.607 1.00 31.89 O
ATOM 9 C3' A A1040 38.986 102.264 101.058 1.00 34.25 C
ATOM 10 O3' A A1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 11 C2' A A1040 39.473 101.583 99.783 1.00 34.55 C
ATOM 12 O2' A A1040 38.409 101.233 98.924 1.00 36.34 O
ATOM 13 C1' A A1040 40.251 102.715 99.110 1.00 31.59 C
ATOM 14 N9 A A1040 41.708 102.707 99.284 1.00 29.29 N
ATOM 15 C8 A A1040 42.452 103.284 100.285 1.00 27.84 C
ATOM 16 N7 A A1040 43.743 103.131 100.138 1.00 26.97 N
ATOM 17 C5 A A1040 43.862 102.397 98.966 1.00 27.79 C
ATOM 18 C6 A A1040 44.983 101.899 98.260 1.00 28.78 C
ATOM 19 N6 A A1040 46.249 102.082 98.643 1.00 25.60 N
ATOM 20 N1 A A1040 44.749 101.195 97.128 1.00 28.87 N
ATOM 21 C2 A A1040 43.482 101.012 96.740 1.00 26.25 C
ATOM 22 N3 A A1040 42.359 101.428 97.313 1.00 26.04 N
ATOM 23 C4 A A1040 42.618 102.122 98.434 1.00 26.75 C
ATOM 24 P A A1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 25 OP1 A A1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 26 OP2 A A1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 27 O5' A A1041 37.861 99.728 103.116 1.00 34.75 O
TER
ATOM 1 O3' U B 613 50.753 104.187 90.509 1.00 29.19 O
ATOM 2 P U B 614 50.310 102.681 90.139 1.00 28.08 P
ATOM 3 OP1 U B 614 51.487 101.793 90.290 1.00 26.67 O
ATOM 4 OP2 U B 614 49.582 102.703 88.847 1.00 27.19 O
ATOM 5 O5' U B 614 49.269 102.319 91.284 1.00 27.95 O
ATOM 6 C5' U B 614 48.472 101.128 91.208 1.00 27.40 C
ATOM 7 C4' U B 614 47.829 100.860 92.542 1.00 27.22 C
ATOM 8 O4' U B 614 48.855 100.542 93.516 1.00 26.24 O
ATOM 9 C3' U B 614 47.096 102.046 93.145 1.00 26.60 C
ATOM 10 O3' U B 614 45.777 102.128 92.625 1.00 25.08 O
ATOM 11 C2' U B 614 47.100 101.710 94.629 1.00 25.66 C
ATOM 12 O2' U B 614 46.107 100.768 94.954 1.00 24.89 O
ATOM 13 C1' U B 614 48.464 101.032 94.785 1.00 26.14 C
ATOM 14 N1 U B 614 49.543 101.874 95.329 1.00 28.09 N
ATOM 15 C2 U B 614 49.608 102.018 96.706 1.00 28.90 C
ATOM 16 O2 U B 614 48.795 101.534 97.461 1.00 31.31 O
ATOM 17 N3 U B 614 50.665 102.759 97.167 1.00 29.52 N
ATOM 18 C4 U B 614 51.640 103.372 96.413 1.00 29.64 C
ATOM 19 O4 U B 614 52.553 103.966 96.986 1.00 27.39 O
ATOM 20 C5 U B 614 51.493 103.211 94.991 1.00 27.81 C
ATOM 21 C6 U B 614 50.476 102.486 94.510 1.00 28.75 C
ATOM 22 P G B 615 45.176 103.546 92.170 1.00 29.29 P
ATOM 23 OP1 G B 615 43.857 103.220 91.574 1.00 27.30 O
ATOM 24 OP2 G B 615 46.179 104.260 91.357 1.00 28.39 O
ATOM 25 O5' G B 615 44.970 104.364 93.525 1.00 24.54 O
TER
Atoms:
OP1: (39.313,107.945,102.326)
OP2: (37.003,108.030,101.194)
C3': (38.986,102.264,101.058)
C1': (40.251,102.715,99.110)
C5': (38.730,104.738,101.624)
O4': (39.742,103.935,99.607)
C8: (42.452,103.284,100.285)
O2': (38.409,101.233,98.924)
C6: (44.983,101.899,98.260)
C5: (43.862,102.397,98.966)
C4: (42.618,102.122,98.434)
P: (38.053,107.264,101.913)
C4': (38.703,103.669,100.573)
C2': (39.473,101.583,99.783)
C2: (43.482,101.012,96.740)
N1: (44.749,101.195,97.128)
N3: (42.359,101.428,97.313)
N6: (46.249,102.082,98.643)
N7: (43.743,103.131,100.138)
N9: (41.708,102.707,99.284)
O5': (38.475,106.014,101.022)
O3': (37.775,101.679,101.529)
OP2: (37.003,108.030,101.194)
C3': (38.986,102.264,101.058)
C1': (40.251,102.715,99.110)
C5': (38.730,104.738,101.624)
O4': (39.742,103.935,99.607)
C8: (42.452,103.284,100.285)
O2': (38.409,101.233,98.924)
C6: (44.983,101.899,98.260)
C5: (43.862,102.397,98.966)
C4: (42.618,102.122,98.434)
P: (38.053,107.264,101.913)
C4': (38.703,103.669,100.573)
C2': (39.473,101.583,99.783)
C2: (43.482,101.012,96.740)
N1: (44.749,101.195,97.128)
N3: (42.359,101.428,97.313)
N6: (46.249,102.082,98.643)
N7: (43.743,103.131,100.138)
N9: (41.708,102.707,99.284)
O5': (38.475,106.014,101.022)
O3': (37.775,101.679,101.529)
C4: (51.640,103.372,96.413)
N3: (50.665,102.759,97.167)
OP1: (51.487,101.793,90.290)
OP2: (49.582,102.703,88.847)
C2: (49.608,102.018,96.706)
C1': (48.464,101.032,94.785)
C3': (47.096,102.046,93.145)
O5': (49.269,102.319,91.284)
O4': (48.855,100.542,93.516)
C5': (48.472,101.128,91.208)
P: (50.310,102.681,90.139)
C4': (47.829,100.860,92.542)
C2': (47.100,101.710,94.629)
O2': (46.107,100.768,94.954)
N1: (49.543,101.874,95.329)
O4: (52.553,103.966,96.986)
O2: (48.795,101.534,97.461)
C6: (50.476,102.486,94.510)
C5: (51.493,103.211,94.991)
O3': (45.777,102.128,92.625)
N3: (50.665,102.759,97.167)
OP1: (51.487,101.793,90.290)
OP2: (49.582,102.703,88.847)
C2: (49.608,102.018,96.706)
C1': (48.464,101.032,94.785)
C3': (47.096,102.046,93.145)
O5': (49.269,102.319,91.284)
O4': (48.855,100.542,93.516)
C5': (48.472,101.128,91.208)
P: (50.310,102.681,90.139)
C4': (47.829,100.860,92.542)
C2': (47.100,101.710,94.629)
O2': (46.107,100.768,94.954)
N1: (49.543,101.874,95.329)
O4: (52.553,103.966,96.986)
O2: (48.795,101.534,97.461)
C6: (50.476,102.486,94.510)
C5: (51.493,103.211,94.991)
O3': (45.777,102.128,92.625)
Image (generated by PyMOL):