Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02047:0887
Extra
PDB:
ATOM 1 O3' A A2046 60.257 128.091 84.908 1.00 52.84 O
ATOM 2 P A A2047 58.837 127.540 84.384 1.00 47.40 P
ATOM 3 OP1 A A2047 58.931 127.613 82.907 1.00 50.12 O
ATOM 4 OP2 A A2047 57.721 128.225 85.071 1.00 48.98 O
ATOM 5 O5' A A2047 58.811 126.012 84.837 1.00 46.40 O
ATOM 6 C5' A A2047 59.713 125.049 84.257 1.00 45.16 C
ATOM 7 C4' A A2047 59.652 123.731 85.006 1.00 43.71 C
ATOM 8 O4' A A2047 58.383 123.055 84.727 1.00 41.80 O
ATOM 9 C3' A A2047 60.744 122.741 84.597 1.00 43.16 C
ATOM 10 O3' A A2047 61.205 121.972 85.713 1.00 45.02 O
ATOM 11 C2' A A2047 60.017 121.845 83.611 1.00 42.77 C
ATOM 12 O2' A A2047 60.593 120.569 83.425 1.00 43.57 O
ATOM 13 C1' A A2047 58.650 121.743 84.273 1.00 42.02 C
ATOM 14 N9 A A2047 57.641 121.310 83.308 1.00 41.37 N
ATOM 15 C8 A A2047 57.064 122.006 82.271 1.00 43.04 C
ATOM 16 N7 A A2047 56.301 121.265 81.499 1.00 42.31 N
ATOM 17 C5 A A2047 56.357 120.006 82.084 1.00 41.44 C
ATOM 18 C6 A A2047 55.791 118.768 81.729 1.00 41.00 C
ATOM 19 N6 A A2047 55.044 118.579 80.644 1.00 40.65 N
ATOM 20 N1 A A2047 56.035 117.711 82.533 1.00 40.43 N
ATOM 21 C2 A A2047 56.801 117.892 83.611 1.00 40.77 C
ATOM 22 N3 A A2047 57.400 118.999 84.044 1.00 41.57 N
ATOM 23 C4 A A2047 57.142 120.032 83.223 1.00 41.52 C
ATOM 24 P G A2048 62.784 121.744 85.917 1.00 45.87 P
ATOM 25 OP1 G A2048 63.428 123.074 86.041 1.00 49.00 O
ATOM 26 OP2 G A2048 63.263 120.802 84.888 1.00 47.43 O
ATOM 27 O5' G A2048 62.907 121.007 87.319 1.00 49.82 O
TER
ATOM 1 O3' C B 886 58.152 109.050 81.574 1.00 33.77 O
ATOM 2 P U B 887 56.569 108.863 81.748 1.00 32.96 P
ATOM 3 OP1 U B 887 56.314 108.364 83.122 1.00 28.68 O
ATOM 4 OP2 U B 887 56.067 108.096 80.584 1.00 33.59 O
ATOM 5 O5' U B 887 56.005 110.343 81.670 1.00 31.27 O
ATOM 6 C5' U B 887 56.163 111.214 82.784 1.00 34.55 C
ATOM 7 C4' U B 887 55.852 112.635 82.404 1.00 34.69 C
ATOM 8 O4' U B 887 56.610 113.018 81.230 1.00 36.06 O
ATOM 9 C3' U B 887 54.447 112.941 81.950 1.00 34.52 C
ATOM 10 O3' U B 887 53.539 113.001 83.034 1.00 35.39 O
ATOM 11 C2' U B 887 54.651 114.322 81.362 1.00 36.43 C
ATOM 12 O2' U B 887 54.860 115.253 82.403 1.00 39.65 O
ATOM 13 C1' U B 887 55.976 114.131 80.626 1.00 37.01 C
ATOM 14 N1 U B 887 55.791 113.890 79.183 1.00 38.24 N
ATOM 15 C2 U B 887 55.463 114.988 78.407 1.00 38.62 C
ATOM 16 O2 U B 887 55.353 116.112 78.867 1.00 41.76 O
ATOM 17 N3 U B 887 55.264 114.727 77.078 1.00 37.60 N
ATOM 18 C4 U B 887 55.359 113.513 76.447 1.00 38.92 C
ATOM 19 O4 U B 887 55.103 113.442 75.239 1.00 39.40 O
ATOM 20 C5 U B 887 55.721 112.420 77.305 1.00 37.41 C
ATOM 21 C6 U B 887 55.919 112.640 78.611 1.00 37.31 C
ATOM 22 P G B 888 51.990 112.661 82.780 1.00 33.24 P
ATOM 23 OP1 G B 888 51.267 112.739 84.070 1.00 32.34 O
ATOM 24 OP2 G B 888 51.938 111.423 81.979 1.00 34.16 O
ATOM 25 O5' G B 888 51.498 113.845 81.850 1.00 31.09 O
TER
ATOM 2 P A A2047 58.837 127.540 84.384 1.00 47.40 P
ATOM 3 OP1 A A2047 58.931 127.613 82.907 1.00 50.12 O
ATOM 4 OP2 A A2047 57.721 128.225 85.071 1.00 48.98 O
ATOM 5 O5' A A2047 58.811 126.012 84.837 1.00 46.40 O
ATOM 6 C5' A A2047 59.713 125.049 84.257 1.00 45.16 C
ATOM 7 C4' A A2047 59.652 123.731 85.006 1.00 43.71 C
ATOM 8 O4' A A2047 58.383 123.055 84.727 1.00 41.80 O
ATOM 9 C3' A A2047 60.744 122.741 84.597 1.00 43.16 C
ATOM 10 O3' A A2047 61.205 121.972 85.713 1.00 45.02 O
ATOM 11 C2' A A2047 60.017 121.845 83.611 1.00 42.77 C
ATOM 12 O2' A A2047 60.593 120.569 83.425 1.00 43.57 O
ATOM 13 C1' A A2047 58.650 121.743 84.273 1.00 42.02 C
ATOM 14 N9 A A2047 57.641 121.310 83.308 1.00 41.37 N
ATOM 15 C8 A A2047 57.064 122.006 82.271 1.00 43.04 C
ATOM 16 N7 A A2047 56.301 121.265 81.499 1.00 42.31 N
ATOM 17 C5 A A2047 56.357 120.006 82.084 1.00 41.44 C
ATOM 18 C6 A A2047 55.791 118.768 81.729 1.00 41.00 C
ATOM 19 N6 A A2047 55.044 118.579 80.644 1.00 40.65 N
ATOM 20 N1 A A2047 56.035 117.711 82.533 1.00 40.43 N
ATOM 21 C2 A A2047 56.801 117.892 83.611 1.00 40.77 C
ATOM 22 N3 A A2047 57.400 118.999 84.044 1.00 41.57 N
ATOM 23 C4 A A2047 57.142 120.032 83.223 1.00 41.52 C
ATOM 24 P G A2048 62.784 121.744 85.917 1.00 45.87 P
ATOM 25 OP1 G A2048 63.428 123.074 86.041 1.00 49.00 O
ATOM 26 OP2 G A2048 63.263 120.802 84.888 1.00 47.43 O
ATOM 27 O5' G A2048 62.907 121.007 87.319 1.00 49.82 O
TER
ATOM 1 O3' C B 886 58.152 109.050 81.574 1.00 33.77 O
ATOM 2 P U B 887 56.569 108.863 81.748 1.00 32.96 P
ATOM 3 OP1 U B 887 56.314 108.364 83.122 1.00 28.68 O
ATOM 4 OP2 U B 887 56.067 108.096 80.584 1.00 33.59 O
ATOM 5 O5' U B 887 56.005 110.343 81.670 1.00 31.27 O
ATOM 6 C5' U B 887 56.163 111.214 82.784 1.00 34.55 C
ATOM 7 C4' U B 887 55.852 112.635 82.404 1.00 34.69 C
ATOM 8 O4' U B 887 56.610 113.018 81.230 1.00 36.06 O
ATOM 9 C3' U B 887 54.447 112.941 81.950 1.00 34.52 C
ATOM 10 O3' U B 887 53.539 113.001 83.034 1.00 35.39 O
ATOM 11 C2' U B 887 54.651 114.322 81.362 1.00 36.43 C
ATOM 12 O2' U B 887 54.860 115.253 82.403 1.00 39.65 O
ATOM 13 C1' U B 887 55.976 114.131 80.626 1.00 37.01 C
ATOM 14 N1 U B 887 55.791 113.890 79.183 1.00 38.24 N
ATOM 15 C2 U B 887 55.463 114.988 78.407 1.00 38.62 C
ATOM 16 O2 U B 887 55.353 116.112 78.867 1.00 41.76 O
ATOM 17 N3 U B 887 55.264 114.727 77.078 1.00 37.60 N
ATOM 18 C4 U B 887 55.359 113.513 76.447 1.00 38.92 C
ATOM 19 O4 U B 887 55.103 113.442 75.239 1.00 39.40 O
ATOM 20 C5 U B 887 55.721 112.420 77.305 1.00 37.41 C
ATOM 21 C6 U B 887 55.919 112.640 78.611 1.00 37.31 C
ATOM 22 P G B 888 51.990 112.661 82.780 1.00 33.24 P
ATOM 23 OP1 G B 888 51.267 112.739 84.070 1.00 32.34 O
ATOM 24 OP2 G B 888 51.938 111.423 81.979 1.00 34.16 O
ATOM 25 O5' G B 888 51.498 113.845 81.850 1.00 31.09 O
TER
Atoms:
OP1: (58.931,127.613,82.907)
OP2: (57.721,128.225,85.071)
C3': (60.744,122.741,84.597)
C1': (58.650,121.743,84.273)
C5': (59.713,125.049,84.257)
O4': (58.383,123.055,84.727)
C8: (57.064,122.006,82.271)
O2': (60.593,120.569,83.425)
C6: (55.791,118.768,81.729)
C5: (56.357,120.006,82.084)
C4: (57.142,120.032,83.223)
P: (58.837,127.540,84.384)
C4': (59.652,123.731,85.006)
C2': (60.017,121.845,83.611)
C2: (56.801,117.892,83.611)
N1: (56.035,117.711,82.533)
N3: (57.400,118.999,84.044)
N6: (55.044,118.579,80.644)
N7: (56.301,121.265,81.499)
N9: (57.641,121.310,83.308)
O5': (58.811,126.012,84.837)
O3': (61.205,121.972,85.713)
OP2: (57.721,128.225,85.071)
C3': (60.744,122.741,84.597)
C1': (58.650,121.743,84.273)
C5': (59.713,125.049,84.257)
O4': (58.383,123.055,84.727)
C8: (57.064,122.006,82.271)
O2': (60.593,120.569,83.425)
C6: (55.791,118.768,81.729)
C5: (56.357,120.006,82.084)
C4: (57.142,120.032,83.223)
P: (58.837,127.540,84.384)
C4': (59.652,123.731,85.006)
C2': (60.017,121.845,83.611)
C2: (56.801,117.892,83.611)
N1: (56.035,117.711,82.533)
N3: (57.400,118.999,84.044)
N6: (55.044,118.579,80.644)
N7: (56.301,121.265,81.499)
N9: (57.641,121.310,83.308)
O5': (58.811,126.012,84.837)
O3': (61.205,121.972,85.713)
C4: (55.359,113.513,76.447)
N3: (55.264,114.727,77.078)
OP1: (56.314,108.364,83.122)
OP2: (56.067,108.096,80.584)
C2: (55.463,114.988,78.407)
C1': (55.976,114.131,80.626)
C3': (54.447,112.941,81.950)
O5': (56.005,110.343,81.670)
O4': (56.610,113.018,81.230)
C5': (56.163,111.214,82.784)
P: (56.569,108.863,81.748)
C4': (55.852,112.635,82.404)
C2': (54.651,114.322,81.362)
O2': (54.860,115.253,82.403)
N1: (55.791,113.890,79.183)
O4: (55.103,113.442,75.239)
O2: (55.353,116.112,78.867)
C6: (55.919,112.640,78.611)
C5: (55.721,112.420,77.305)
O3': (53.539,113.001,83.034)
N3: (55.264,114.727,77.078)
OP1: (56.314,108.364,83.122)
OP2: (56.067,108.096,80.584)
C2: (55.463,114.988,78.407)
C1': (55.976,114.131,80.626)
C3': (54.447,112.941,81.950)
O5': (56.005,110.343,81.670)
O4': (56.610,113.018,81.230)
C5': (56.163,111.214,82.784)
P: (56.569,108.863,81.748)
C4': (55.852,112.635,82.404)
C2': (54.651,114.322,81.362)
O2': (54.860,115.253,82.403)
N1: (55.791,113.890,79.183)
O4: (55.103,113.442,75.239)
O2: (55.353,116.112,78.867)
C6: (55.919,112.640,78.611)
C5: (55.721,112.420,77.305)
O3': (53.539,113.001,83.034)
Image (generated by PyMOL):