Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02047:0887
Extra
PDB:
ATOM 1 O3' A A2046 59.963 127.970 84.600 1.00 47.86 O
ATOM 2 P A A2047 58.534 127.469 84.051 1.00 45.13 P
ATOM 3 OP1 A A2047 58.593 127.591 82.574 1.00 45.69 O
ATOM 4 OP2 A A2047 57.446 128.152 84.794 1.00 47.15 O
ATOM 5 O5' A A2047 58.482 125.920 84.434 1.00 46.55 O
ATOM 6 C5' A A2047 59.439 124.985 83.890 1.00 45.73 C
ATOM 7 C4' A A2047 59.357 123.656 84.610 1.00 45.08 C
ATOM 8 O4' A A2047 58.117 122.967 84.249 1.00 43.16 O
ATOM 9 C3' A A2047 60.483 122.684 84.253 1.00 45.41 C
ATOM 10 O3' A A2047 60.870 121.913 85.393 1.00 48.56 O
ATOM 11 C2' A A2047 59.817 121.770 83.238 1.00 44.20 C
ATOM 12 O2' A A2047 60.443 120.513 83.081 1.00 41.97 O
ATOM 13 C1' A A2047 58.427 121.649 83.848 1.00 43.65 C
ATOM 14 N9 A A2047 57.443 121.162 82.884 1.00 45.37 N
ATOM 15 C8 A A2047 56.859 121.816 81.829 1.00 45.93 C
ATOM 16 N7 A A2047 56.099 121.046 81.086 1.00 45.57 N
ATOM 17 C5 A A2047 56.169 119.807 81.709 1.00 44.13 C
ATOM 18 C6 A A2047 55.612 118.562 81.398 1.00 43.23 C
ATOM 19 N6 A A2047 54.875 118.330 80.314 1.00 43.23 N
ATOM 20 N1 A A2047 55.858 117.539 82.237 1.00 43.68 N
ATOM 21 C2 A A2047 56.636 117.753 83.299 1.00 43.17 C
ATOM 22 N3 A A2047 57.240 118.866 83.684 1.00 43.83 N
ATOM 23 C4 A A2047 56.964 119.872 82.836 1.00 44.71 C
ATOM 24 P G A2048 62.422 121.550 85.614 1.00 50.05 P
ATOM 25 OP1 G A2048 63.138 122.844 85.744 1.00 52.95 O
ATOM 26 OP2 G A2048 62.858 120.577 84.572 1.00 48.57 O
ATOM 27 O5' G A2048 62.458 120.807 87.022 1.00 48.32 O
TER
ATOM 1 O3' C B 886 57.856 108.841 81.209 1.00 30.61 O
ATOM 2 P U B 887 56.271 108.637 81.354 1.00 30.53 P
ATOM 3 OP1 U B 887 56.054 108.081 82.709 1.00 26.66 O
ATOM 4 OP2 U B 887 55.787 107.887 80.161 1.00 29.12 O
ATOM 5 O5' U B 887 55.692 110.119 81.339 1.00 29.84 O
ATOM 6 C5' U B 887 55.968 110.992 82.439 1.00 32.96 C
ATOM 7 C4' U B 887 55.646 112.427 82.103 1.00 33.60 C
ATOM 8 O4' U B 887 56.416 112.875 80.958 1.00 34.74 O
ATOM 9 C3' U B 887 54.236 112.762 81.672 1.00 34.00 C
ATOM 10 O3' U B 887 53.301 112.756 82.737 1.00 33.23 O
ATOM 11 C2' U B 887 54.440 114.164 81.119 1.00 34.45 C
ATOM 12 O2' U B 887 54.620 115.120 82.146 1.00 33.43 O
ATOM 13 C1' U B 887 55.755 113.984 80.362 1.00 35.03 C
ATOM 14 N1 U B 887 55.516 113.718 78.932 1.00 37.00 N
ATOM 15 C2 U B 887 55.110 114.794 78.151 1.00 37.53 C
ATOM 16 O2 U B 887 55.000 115.927 78.592 1.00 40.05 O
ATOM 17 N3 U B 887 54.845 114.499 76.838 1.00 36.59 N
ATOM 18 C4 U B 887 54.954 113.273 76.226 1.00 37.41 C
ATOM 19 O4 U B 887 54.642 113.167 75.041 1.00 38.04 O
ATOM 20 C5 U B 887 55.407 112.211 77.082 1.00 36.98 C
ATOM 21 C6 U B 887 55.665 112.462 78.374 1.00 37.01 C
ATOM 22 P G B 888 51.758 112.453 82.417 1.00 33.65 P
ATOM 23 OP1 G B 888 50.987 112.561 83.683 1.00 31.78 O
ATOM 24 OP2 G B 888 51.699 111.200 81.622 1.00 33.73 O
ATOM 25 O5' G B 888 51.327 113.654 81.471 1.00 29.78 O
TER
ATOM 2 P A A2047 58.534 127.469 84.051 1.00 45.13 P
ATOM 3 OP1 A A2047 58.593 127.591 82.574 1.00 45.69 O
ATOM 4 OP2 A A2047 57.446 128.152 84.794 1.00 47.15 O
ATOM 5 O5' A A2047 58.482 125.920 84.434 1.00 46.55 O
ATOM 6 C5' A A2047 59.439 124.985 83.890 1.00 45.73 C
ATOM 7 C4' A A2047 59.357 123.656 84.610 1.00 45.08 C
ATOM 8 O4' A A2047 58.117 122.967 84.249 1.00 43.16 O
ATOM 9 C3' A A2047 60.483 122.684 84.253 1.00 45.41 C
ATOM 10 O3' A A2047 60.870 121.913 85.393 1.00 48.56 O
ATOM 11 C2' A A2047 59.817 121.770 83.238 1.00 44.20 C
ATOM 12 O2' A A2047 60.443 120.513 83.081 1.00 41.97 O
ATOM 13 C1' A A2047 58.427 121.649 83.848 1.00 43.65 C
ATOM 14 N9 A A2047 57.443 121.162 82.884 1.00 45.37 N
ATOM 15 C8 A A2047 56.859 121.816 81.829 1.00 45.93 C
ATOM 16 N7 A A2047 56.099 121.046 81.086 1.00 45.57 N
ATOM 17 C5 A A2047 56.169 119.807 81.709 1.00 44.13 C
ATOM 18 C6 A A2047 55.612 118.562 81.398 1.00 43.23 C
ATOM 19 N6 A A2047 54.875 118.330 80.314 1.00 43.23 N
ATOM 20 N1 A A2047 55.858 117.539 82.237 1.00 43.68 N
ATOM 21 C2 A A2047 56.636 117.753 83.299 1.00 43.17 C
ATOM 22 N3 A A2047 57.240 118.866 83.684 1.00 43.83 N
ATOM 23 C4 A A2047 56.964 119.872 82.836 1.00 44.71 C
ATOM 24 P G A2048 62.422 121.550 85.614 1.00 50.05 P
ATOM 25 OP1 G A2048 63.138 122.844 85.744 1.00 52.95 O
ATOM 26 OP2 G A2048 62.858 120.577 84.572 1.00 48.57 O
ATOM 27 O5' G A2048 62.458 120.807 87.022 1.00 48.32 O
TER
ATOM 1 O3' C B 886 57.856 108.841 81.209 1.00 30.61 O
ATOM 2 P U B 887 56.271 108.637 81.354 1.00 30.53 P
ATOM 3 OP1 U B 887 56.054 108.081 82.709 1.00 26.66 O
ATOM 4 OP2 U B 887 55.787 107.887 80.161 1.00 29.12 O
ATOM 5 O5' U B 887 55.692 110.119 81.339 1.00 29.84 O
ATOM 6 C5' U B 887 55.968 110.992 82.439 1.00 32.96 C
ATOM 7 C4' U B 887 55.646 112.427 82.103 1.00 33.60 C
ATOM 8 O4' U B 887 56.416 112.875 80.958 1.00 34.74 O
ATOM 9 C3' U B 887 54.236 112.762 81.672 1.00 34.00 C
ATOM 10 O3' U B 887 53.301 112.756 82.737 1.00 33.23 O
ATOM 11 C2' U B 887 54.440 114.164 81.119 1.00 34.45 C
ATOM 12 O2' U B 887 54.620 115.120 82.146 1.00 33.43 O
ATOM 13 C1' U B 887 55.755 113.984 80.362 1.00 35.03 C
ATOM 14 N1 U B 887 55.516 113.718 78.932 1.00 37.00 N
ATOM 15 C2 U B 887 55.110 114.794 78.151 1.00 37.53 C
ATOM 16 O2 U B 887 55.000 115.927 78.592 1.00 40.05 O
ATOM 17 N3 U B 887 54.845 114.499 76.838 1.00 36.59 N
ATOM 18 C4 U B 887 54.954 113.273 76.226 1.00 37.41 C
ATOM 19 O4 U B 887 54.642 113.167 75.041 1.00 38.04 O
ATOM 20 C5 U B 887 55.407 112.211 77.082 1.00 36.98 C
ATOM 21 C6 U B 887 55.665 112.462 78.374 1.00 37.01 C
ATOM 22 P G B 888 51.758 112.453 82.417 1.00 33.65 P
ATOM 23 OP1 G B 888 50.987 112.561 83.683 1.00 31.78 O
ATOM 24 OP2 G B 888 51.699 111.200 81.622 1.00 33.73 O
ATOM 25 O5' G B 888 51.327 113.654 81.471 1.00 29.78 O
TER
Atoms:
OP1: (58.593,127.591,82.574)
OP2: (57.446,128.152,84.794)
C3': (60.483,122.684,84.253)
C1': (58.427,121.649,83.848)
C5': (59.439,124.985,83.890)
O4': (58.117,122.967,84.249)
C8: (56.859,121.816,81.829)
O2': (60.443,120.513,83.081)
C6: (55.612,118.562,81.398)
C5: (56.169,119.807,81.709)
C4: (56.964,119.872,82.836)
P: (58.534,127.469,84.051)
C4': (59.357,123.656,84.610)
C2': (59.817,121.770,83.238)
C2: (56.636,117.753,83.299)
N1: (55.858,117.539,82.237)
N3: (57.240,118.866,83.684)
N6: (54.875,118.330,80.314)
N7: (56.099,121.046,81.086)
N9: (57.443,121.162,82.884)
O5': (58.482,125.920,84.434)
O3': (60.870,121.913,85.393)
OP2: (57.446,128.152,84.794)
C3': (60.483,122.684,84.253)
C1': (58.427,121.649,83.848)
C5': (59.439,124.985,83.890)
O4': (58.117,122.967,84.249)
C8: (56.859,121.816,81.829)
O2': (60.443,120.513,83.081)
C6: (55.612,118.562,81.398)
C5: (56.169,119.807,81.709)
C4: (56.964,119.872,82.836)
P: (58.534,127.469,84.051)
C4': (59.357,123.656,84.610)
C2': (59.817,121.770,83.238)
C2: (56.636,117.753,83.299)
N1: (55.858,117.539,82.237)
N3: (57.240,118.866,83.684)
N6: (54.875,118.330,80.314)
N7: (56.099,121.046,81.086)
N9: (57.443,121.162,82.884)
O5': (58.482,125.920,84.434)
O3': (60.870,121.913,85.393)
C4: (54.954,113.273,76.226)
N3: (54.845,114.499,76.838)
OP1: (56.054,108.081,82.709)
OP2: (55.787,107.887,80.161)
C2: (55.110,114.794,78.151)
C1': (55.755,113.984,80.362)
C3': (54.236,112.762,81.672)
O5': (55.692,110.119,81.339)
O4': (56.416,112.875,80.958)
C5': (55.968,110.992,82.439)
P: (56.271,108.637,81.354)
C4': (55.646,112.427,82.103)
C2': (54.440,114.164,81.119)
O2': (54.620,115.120,82.146)
N1: (55.516,113.718,78.932)
O4: (54.642,113.167,75.041)
O2: (55.000,115.927,78.592)
C6: (55.665,112.462,78.374)
C5: (55.407,112.211,77.082)
O3': (53.301,112.756,82.737)
N3: (54.845,114.499,76.838)
OP1: (56.054,108.081,82.709)
OP2: (55.787,107.887,80.161)
C2: (55.110,114.794,78.151)
C1': (55.755,113.984,80.362)
C3': (54.236,112.762,81.672)
O5': (55.692,110.119,81.339)
O4': (56.416,112.875,80.958)
C5': (55.968,110.992,82.439)
P: (56.271,108.637,81.354)
C4': (55.646,112.427,82.103)
C2': (54.440,114.164,81.119)
O2': (54.620,115.120,82.146)
N1: (55.516,113.718,78.932)
O4: (54.642,113.167,75.041)
O2: (55.000,115.927,78.592)
C6: (55.665,112.462,78.374)
C5: (55.407,112.211,77.082)
O3': (53.301,112.756,82.737)
Image (generated by PyMOL):