ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3NPQ:A40:A32

Extra

PDB:
ATOM 1 O3' A A 39 30.996 -21.708 -4.308 1.00 61.57 O
ATOM 2 P A A 40 30.120 -22.653 -3.361 1.00 61.43 P
ATOM 3 OP1 A A 40 28.979 -23.160 -4.157 1.00 66.55 O
ATOM 4 OP2 A A 40 29.875 -21.924 -2.097 1.00 55.26 O
ATOM 5 O5' A A 40 31.111 -23.868 -3.043 1.00 49.24 O
ATOM 6 C5' A A 40 31.605 -24.688 -4.095 1.00 47.36 C
ATOM 7 C4' A A 40 32.426 -25.834 -3.533 1.00 45.06 C
ATOM 8 O4' A A 40 33.691 -25.335 -3.032 1.00 49.50 O
ATOM 9 C3' A A 40 31.785 -26.545 -2.351 1.00 52.48 C
ATOM 10 O3' A A 40 30.925 -27.578 -2.810 1.00 60.96 O
ATOM 11 C2' A A 40 33.001 -27.107 -1.623 1.00 49.21 C
ATOM 12 O2' A A 40 33.469 -28.310 -2.200 1.00 50.93 O
ATOM 13 C1' A A 40 34.023 -25.992 -1.823 1.00 44.67 C
ATOM 14 N9 A A 40 34.028 -25.004 -0.747 1.00 37.90 N
ATOM 15 C8 A A 40 33.530 -23.732 -0.794 1.00 35.88 C
ATOM 16 N7 A A 40 33.673 -23.066 0.327 1.00 34.41 N
ATOM 17 C5 A A 40 34.309 -23.964 1.168 1.00 33.03 C
ATOM 18 C6 A A 40 34.744 -23.869 2.504 1.00 32.75 C
ATOM 19 N6 A A 40 34.592 -22.771 3.252 1.00 30.85 N
ATOM 20 N1 A A 40 35.342 -24.950 3.045 1.00 33.00 N
ATOM 21 C2 A A 40 35.493 -26.048 2.295 1.00 35.32 C
ATOM 22 N3 A A 40 35.127 -26.256 1.031 1.00 43.47 N
ATOM 23 C4 A A 40 34.535 -25.164 0.521 1.00 38.83 C
ATOM 24 P A A 41 29.490 -27.772 -2.132 1.00 59.54 P
ATOM 25 OP1 A A 41 28.707 -28.696 -2.982 1.00 67.32 O
ATOM 26 OP2 A A 41 28.953 -26.432 -1.804 1.00 53.71 O
ATOM 27 O5' A A 41 29.846 -28.507 -0.757 1.00 57.81 O
TER

ATOM 1 O3' C B 31 37.205 -26.685 12.321 1.00 56.42 O
ATOM 2 P U B 32 38.623 -26.379 11.645 1.00 46.83 P
ATOM 3 OP1 U B 32 39.472 -27.579 11.804 1.00 56.83 O
ATOM 4 OP2 U B 32 39.095 -25.067 12.141 1.00 48.36 O
ATOM 5 O5' U B 32 38.247 -26.217 10.101 1.00 42.84 O
ATOM 6 C5' U B 32 37.590 -27.277 9.419 1.00 51.63 C
ATOM 7 C4' U B 32 37.061 -26.796 8.082 1.00 49.88 C
ATOM 8 O4' U B 32 35.979 -25.854 8.290 1.00 47.83 O
ATOM 9 C3' U B 32 38.065 -26.023 7.243 1.00 46.54 C
ATOM 10 O3' U B 32 38.909 -26.916 6.530 1.00 50.80 O
ATOM 11 C2' U B 32 37.131 -25.261 6.313 1.00 41.39 C
ATOM 12 O2' U B 32 36.624 -26.076 5.276 1.00 45.14 O
ATOM 13 C1' U B 32 36.008 -24.871 7.271 1.00 39.43 C
ATOM 14 N1 U B 32 36.199 -23.528 7.894 1.00 33.57 N
ATOM 15 C2 U B 32 35.833 -22.402 7.187 1.00 28.17 C
ATOM 16 O2 U B 32 35.356 -22.443 6.067 1.00 30.90 O
ATOM 17 N3 U B 32 36.046 -21.214 7.842 1.00 21.97 N
ATOM 18 C4 U B 32 36.577 -21.044 9.107 1.00 24.17 C
ATOM 19 O4 U B 32 36.709 -19.914 9.565 1.00 28.14 O
ATOM 20 C5 U B 32 36.935 -22.265 9.781 1.00 28.13 C
ATOM 21 C6 U B 32 36.736 -23.434 9.162 1.00 32.96 C
ATOM 22 P C B 33 40.440 -26.525 6.279 1.00 42.43 P
ATOM 23 OP1 C B 33 41.148 -27.735 5.806 1.00 51.52 O
ATOM 24 OP2 C B 33 40.929 -25.800 7.473 1.00 38.66 O
ATOM 25 O5' C B 33 40.341 -25.478 5.075 1.00 39.40 O
TER

Atoms:
OP1: (28.979,-23.160,-4.157)
OP2: (29.875,-21.924,-2.097)
C3': (31.785,-26.545,-2.351)
C1': (34.023,-25.992,-1.823)
C5': (31.605,-24.688,-4.095)
O4': (33.691,-25.335,-3.032)
C8: (33.530,-23.732,-0.794)
O2': (33.469,-28.310,-2.200)
C6: (34.744,-23.869,2.504)
C5: (34.309,-23.964,1.168)
C4: (34.535,-25.164,0.521)
P: (30.120,-22.653,-3.361)
C4': (32.426,-25.834,-3.533)
C2': (33.001,-27.107,-1.623)
C2: (35.493,-26.048,2.295)
N1: (35.342,-24.950,3.045)
N3: (35.127,-26.256,1.031)
N6: (34.592,-22.771,3.252)
N7: (33.673,-23.066,0.327)
N9: (34.028,-25.004,-0.747)
O5': (31.111,-23.868,-3.043)
O3': (30.925,-27.578,-2.810)
C4: (36.577,-21.044,9.107)
N3: (36.046,-21.214,7.842)
OP1: (39.472,-27.579,11.804)
OP2: (39.095,-25.067,12.141)
C2: (35.833,-22.402,7.187)
C1': (36.008,-24.871,7.271)
C3': (38.065,-26.023,7.243)
O5': (38.247,-26.217,10.101)
O4': (35.979,-25.854,8.290)
C5': (37.590,-27.277,9.419)
P: (38.623,-26.379,11.645)
C4': (37.061,-26.796,8.082)
C2': (37.131,-25.261,6.313)
O2': (36.624,-26.076,5.276)
N1: (36.199,-23.528,7.894)
O4: (36.709,-19.914,9.565)
O2: (35.356,-22.443,6.067)
C6: (36.736,-23.434,9.162)
C5: (36.935,-22.265,9.781)
O3': (38.909,-26.916,6.530)
Image (generated by PyMOL):
PyMOL image
show in jmol